Ggra4477.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4477.t2
Unique Name	Ggra4477.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:606986..608890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP087CT
PFAMs	GMC_oxred_C,GMC_oxred_N
Max annot lvl	2759\|Eukaryota
Evalue	4.78e-190
EggNOG OGs	COG2303@1\|root,KOG1238@2759\|Eukaryota
Description	flavin adenine dinucleotide binding
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4477	Ggra4477	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 605944..608890 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4477.t2.start1	Ggra4477.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 606986..606988 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4477.t2.CDS1	Ggra4477.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 606986..608890 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4477.t2.exon1	Ggra4477.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 606986..608890 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4477.t2.stop1	Ggra4477.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 608888..608890 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4477.t2	Ggra4477.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 606986..608890 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:606986..608890+
coding sequence from alignment at tig00000898_pilon:606986..608890+

mRNA sequence

>Ggra4477.t2 ID=Ggra4477.t2|Name=Ggra4477.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=635bp
MASRRGPLPCFVPISPIFHQHQTSFTHSLTPRARPTPVLPPLRVPITSAA
PAQTVSDALPRTASLPPSQAYDYVIIGGGAAGCVLANRLSANSTTRVLLL
EAGPPDDDFYIRIPLGFPYLLGSRHDWAFVTEPEPNLNNRRLYFPRGKVM
GGSHAISVMLYHRGNAADYESWPEGWRADDVLPYFKRSENQLSKDKQSSD
AHSTQGPLAVSDLARVNPMSTAFVDAAKKTGLPNNDDFNDWSRTQDGVGL
FQVTQRHGNRESPATAYLSNIRSRRNLTVKAGVLVERIIFEEVNGQPRAV
GVSFIDGDGKRVYIRADKEVLLSAGVYASPQLLMLSGIGPAEHLKDMGIP
VIADIPAVGRNLQDHAAVMLSYESLSPQADKRKSSLYYTERTGKNIGTIL
NYIFRGKGPLTSPMCEAGGFAKSDASMKACDLQLRFIPFVSEPDPYHSLA
DFATAGSYLKNQANRPAGFTLQSVAARPRSRGWVALRSTDIRDSMKIHGN
WMSDSQDLRTLVHGLKLCRQIAQQDDMNEYRGRELYPGGEVVSDSDLEKY
VVDTCHTANAMVGTCRMGSGDDCAVDAELRVKGIEGLRVIDSSVMPNLPG
GQSGAPTMMIAEKGADLVLQSQQSLVGAVSASRG*

spliced messenger RNA

>Ggra4477.t2 ID=Ggra4477.t2|Name=Ggra4477.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1905bp|location=Sequence derived from alignment at tig00000898_pilon:606986..608890+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCCGGAGAGGTCCTCTTCCTTGCTTTGTACCCATTTCTCCAAT
TTTCCACCAACATCAAACATCTTTCACACATTCCCTCACGCCACGTGCGC
GTCCCACACCCGTACTACCACCTCTTCGCGTCCCCATCACAAGCGCAGCC
CCCGCACAAACAGTCTCCGATGCATTGCCGCGCACTGCAAGTCTGCCGCC
TAGTCAGGCCTATGATTACGTGATCATTGGTGGAGGTGCAGCTGGTTGCG
TGCTCGCGAATCGCTTATCAGCAAACAGTACCACGCGCGTATTGCTCTTG
GAAGCAGGTCCCCCAGATGATGATTTCTATATCAGAATCCCTCTTGGATT
TCCCTACTTATTGGGCTCACGGCACGATTGGGCTTTCGTTACTGAGCCAG
AACCAAATCTGAACAATCGTCGTTTATATTTTCCACGCGGTAAGGTTATG
GGTGGTTCACATGCCATATCGGTTATGCTCTACCATCGAGGTAATGCTGC
GGATTACGAATCATGGCCTGAGGGATGGCGCGCTGACGACGTGCTTCCAT
ACTTCAAGCGTTCTGAGAATCAACTCTCGAAGGACAAACAATCATCCGAC
GCACATAGCACCCAGGGTCCCCTGGCTGTAAGTGATCTGGCTCGCGTGAA
TCCCATGTCTACTGCGTTCGTCGATGCAGCAAAAAAGACTGGCCTTCCCA
ATAACGACGACTTCAATGACTGGAGCCGAACACAAGATGGAGTGGGACTT
TTCCAAGTCACACAGAGACACGGAAACCGCGAATCACCTGCCACTGCGTA
CCTCAGCAACATAAGATCCAGAAGGAACTTGACTGTGAAAGCAGGGGTCC
TTGTTGAACGAATTATATTCGAAGAGGTAAACGGGCAACCGCGTGCGGTC
GGCGTTTCTTTCATTGATGGTGATGGAAAACGTGTGTATATCAGGGCTGA
TAAAGAGGTGCTGCTTTCAGCAGGAGTATATGCCAGCCCACAATTGCTGA
TGTTAAGTGGAATTGGTCCTGCAGAACATCTGAAGGATATGGGAATTCCT
GTCATTGCGGACATACCAGCTGTGGGTCGGAATTTGCAAGATCATGCTGC
AGTGATGCTGAGTTACGAAAGCCTCTCTCCACAGGCTGATAAGCGAAAGA
GTTCATTGTATTACACGGAAAGGACCGGCAAGAATATCGGTACTATCCTG
AACTATATCTTTCGGGGAAAGGGTCCACTGACCAGTCCCATGTGCGAGGC
TGGGGGTTTTGCCAAGTCGGACGCGAGCATGAAAGCGTGCGATCTGCAAT
TACGCTTTATACCATTTGTGTCAGAACCTGATCCTTACCATTCTCTAGCT
GACTTTGCGACGGCGGGGTCTTACTTGAAGAACCAAGCCAATCGACCGGC
TGGTTTCACACTCCAAAGCGTGGCGGCTCGACCACGCTCAAGAGGGTGGG
TAGCGCTACGCTCAACCGACATTAGGGACAGTATGAAGATCCACGGTAAC
TGGATGTCAGACTCACAGGATCTTCGAACACTAGTACATGGACTGAAACT
ATGTCGGCAGATTGCGCAACAGGATGATATGAATGAATATCGCGGACGCG
AGTTGTATCCCGGTGGGGAGGTAGTGTCTGACAGCGACCTAGAAAAGTAT
GTAGTGGATACTTGTCACACTGCGAACGCGATGGTTGGGACGTGTCGAAT
GGGAAGTGGGGATGACTGTGCGGTTGATGCGGAACTTCGGGTGAAGGGGA
TAGAGGGATTGAGGGTCATTGACTCGTCTGTGATGCCTAACTTGCCGGGC
GGTCAGTCTGGGGCTCCGACGATGATGATTGCCGAAAAGGGGGCGGACCT
GGTGTTGCAGTCGCAGCAAAGCTTAGTGGGTGCCGTAAGCGCGTCGCGCG
GATAG

protein sequence of Ggra4477.t2

>Ggra4477.t2 ID=Ggra4477.t2|Name=Ggra4477.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=635bp
MASRRGPLPCFVPISPIFHQHQTSFTHSLTPRARPTPVLPPLRVPITSAA
PAQTVSDALPRTASLPPSQAYDYVIIGGGAAGCVLANRLSANSTTRVLLL
EAGPPDDDFYIRIPLGFPYLLGSRHDWAFVTEPEPNLNNRRLYFPRGKVM
GGSHAISVMLYHRGNAADYESWPEGWRADDVLPYFKRSENQLSKDKQSSD
AHSTQGPLAVSDLARVNPMSTAFVDAAKKTGLPNNDDFNDWSRTQDGVGL
FQVTQRHGNRESPATAYLSNIRSRRNLTVKAGVLVERIIFEEVNGQPRAV
GVSFIDGDGKRVYIRADKEVLLSAGVYASPQLLMLSGIGPAEHLKDMGIP
VIADIPAVGRNLQDHAAVMLSYESLSPQADKRKSSLYYTERTGKNIGTIL
NYIFRGKGPLTSPMCEAGGFAKSDASMKACDLQLRFIPFVSEPDPYHSLA
DFATAGSYLKNQANRPAGFTLQSVAARPRSRGWVALRSTDIRDSMKIHGN
WMSDSQDLRTLVHGLKLCRQIAQQDDMNEYRGRELYPGGEVVSDSDLEKY
VVDTCHTANAMVGTCRMGSGDDCAVDAELRVKGIEGLRVIDSSVMPNLPG
GQSGAPTMMIAEKGADLVLQSQQSLVGAVSASRG*

mRNA from alignment at tig00000898_pilon:606986..608890+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4477.t2 ID=Ggra4477.t2|Name=Ggra4477.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1905bp|location=Sequence derived from alignment at tig00000898_pilon:606986..608890+ (Gracilaria gracilis GNS1m male)
ATGGCGTCCCGGAGAGGTCCTCTTCCTTGCTTTGTACCCATTTCTCCAAT
TTTCCACCAACATCAAACATCTTTCACACATTCCCTCACGCCACGTGCGC
GTCCCACACCCGTACTACCACCTCTTCGCGTCCCCATCACAAGCGCAGCC
CCCGCACAAACAGTCTCCGATGCATTGCCGCGCACTGCAAGTCTGCCGCC
TAGTCAGGCCTATGATTACGTGATCATTGGTGGAGGTGCAGCTGGTTGCG
TGCTCGCGAATCGCTTATCAGCAAACAGTACCACGCGCGTATTGCTCTTG
GAAGCAGGTCCCCCAGATGATGATTTCTATATCAGAATCCCTCTTGGATT
TCCCTACTTATTGGGCTCACGGCACGATTGGGCTTTCGTTACTGAGCCAG
AACCAAATCTGAACAATCGTCGTTTATATTTTCCACGCGGTAAGGTTATG
GGTGGTTCACATGCCATATCGGTTATGCTCTACCATCGAGGTAATGCTGC
GGATTACGAATCATGGCCTGAGGGATGGCGCGCTGACGACGTGCTTCCAT
ACTTCAAGCGTTCTGAGAATCAACTCTCGAAGGACAAACAATCATCCGAC
GCACATAGCACCCAGGGTCCCCTGGCTGTAAGTGATCTGGCTCGCGTGAA
TCCCATGTCTACTGCGTTCGTCGATGCAGCAAAAAAGACTGGCCTTCCCA
ATAACGACGACTTCAATGACTGGAGCCGAACACAAGATGGAGTGGGACTT
TTCCAAGTCACACAGAGACACGGAAACCGCGAATCACCTGCCACTGCGTA
CCTCAGCAACATAAGATCCAGAAGGAACTTGACTGTGAAAGCAGGGGTCC
TTGTTGAACGAATTATATTCGAAGAGGTAAACGGGCAACCGCGTGCGGTC
GGCGTTTCTTTCATTGATGGTGATGGAAAACGTGTGTATATCAGGGCTGA
TAAAGAGGTGCTGCTTTCAGCAGGAGTATATGCCAGCCCACAATTGCTGA
TGTTAAGTGGAATTGGTCCTGCAGAACATCTGAAGGATATGGGAATTCCT
GTCATTGCGGACATACCAGCTGTGGGTCGGAATTTGCAAGATCATGCTGC
AGTGATGCTGAGTTACGAAAGCCTCTCTCCACAGGCTGATAAGCGAAAGA
GTTCATTGTATTACACGGAAAGGACCGGCAAGAATATCGGTACTATCCTG
AACTATATCTTTCGGGGAAAGGGTCCACTGACCAGTCCCATGTGCGAGGC
TGGGGGTTTTGCCAAGTCGGACGCGAGCATGAAAGCGTGCGATCTGCAAT
TACGCTTTATACCATTTGTGTCAGAACCTGATCCTTACCATTCTCTAGCT
GACTTTGCGACGGCGGGGTCTTACTTGAAGAACCAAGCCAATCGACCGGC
TGGTTTCACACTCCAAAGCGTGGCGGCTCGACCACGCTCAAGAGGGTGGG
TAGCGCTACGCTCAACCGACATTAGGGACAGTATGAAGATCCACGGTAAC
TGGATGTCAGACTCACAGGATCTTCGAACACTAGTACATGGACTGAAACT
ATGTCGGCAGATTGCGCAACAGGATGATATGAATGAATATCGCGGACGCG
AGTTGTATCCCGGTGGGGAGGTAGTGTCTGACAGCGACCTAGAAAAGTAT
GTAGTGGATACTTGTCACACTGCGAACGCGATGGTTGGGACGTGTCGAAT
GGGAAGTGGGGATGACTGTGCGGTTGATGCGGAACTTCGGGTGAAGGGGA
TAGAGGGATTGAGGGTCATTGACTCGTCTGTGATGCCTAACTTGCCGGGC
GGTCAGTCTGGGGCTCCGACGATGATGATTGCCGAAAAGGGGGCGGACCT
GGTGTTGCAGTCGCAGCAAAGCTTAGTGGGTGCCGTAAGCGCGTCGCGCG
GATAG

Coding sequence (CDS) from alignment at tig00000898_pilon:606986..608890+

>Ggra4477.t2 ID=Ggra4477.t2|Name=Ggra4477.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1905bp|location=Sequence derived from alignment at tig00000898_pilon:606986..608890+ (Gracilaria gracilis GNS1m male)
ATGGCGTCCCGGAGAGGTCCTCTTCCTTGCTTTGTACCCATTTCTCCAAT
TTTCCACCAACATCAAACATCTTTCACACATTCCCTCACGCCACGTGCGC
GTCCCACACCCGTACTACCACCTCTTCGCGTCCCCATCACAAGCGCAGCC
CCCGCACAAACAGTCTCCGATGCATTGCCGCGCACTGCAAGTCTGCCGCC
TAGTCAGGCCTATGATTACGTGATCATTGGTGGAGGTGCAGCTGGTTGCG
TGCTCGCGAATCGCTTATCAGCAAACAGTACCACGCGCGTATTGCTCTTG
GAAGCAGGTCCCCCAGATGATGATTTCTATATCAGAATCCCTCTTGGATT
TCCCTACTTATTGGGCTCACGGCACGATTGGGCTTTCGTTACTGAGCCAG
AACCAAATCTGAACAATCGTCGTTTATATTTTCCACGCGGTAAGGTTATG
GGTGGTTCACATGCCATATCGGTTATGCTCTACCATCGAGGTAATGCTGC
GGATTACGAATCATGGCCTGAGGGATGGCGCGCTGACGACGTGCTTCCAT
ACTTCAAGCGTTCTGAGAATCAACTCTCGAAGGACAAACAATCATCCGAC
GCACATAGCACCCAGGGTCCCCTGGCTGTAAGTGATCTGGCTCGCGTGAA
TCCCATGTCTACTGCGTTCGTCGATGCAGCAAAAAAGACTGGCCTTCCCA
ATAACGACGACTTCAATGACTGGAGCCGAACACAAGATGGAGTGGGACTT
TTCCAAGTCACACAGAGACACGGAAACCGCGAATCACCTGCCACTGCGTA
CCTCAGCAACATAAGATCCAGAAGGAACTTGACTGTGAAAGCAGGGGTCC
TTGTTGAACGAATTATATTCGAAGAGGTAAACGGGCAACCGCGTGCGGTC
GGCGTTTCTTTCATTGATGGTGATGGAAAACGTGTGTATATCAGGGCTGA
TAAAGAGGTGCTGCTTTCAGCAGGAGTATATGCCAGCCCACAATTGCTGA
TGTTAAGTGGAATTGGTCCTGCAGAACATCTGAAGGATATGGGAATTCCT
GTCATTGCGGACATACCAGCTGTGGGTCGGAATTTGCAAGATCATGCTGC
AGTGATGCTGAGTTACGAAAGCCTCTCTCCACAGGCTGATAAGCGAAAGA
GTTCATTGTATTACACGGAAAGGACCGGCAAGAATATCGGTACTATCCTG
AACTATATCTTTCGGGGAAAGGGTCCACTGACCAGTCCCATGTGCGAGGC
TGGGGGTTTTGCCAAGTCGGACGCGAGCATGAAAGCGTGCGATCTGCAAT
TACGCTTTATACCATTTGTGTCAGAACCTGATCCTTACCATTCTCTAGCT
GACTTTGCGACGGCGGGGTCTTACTTGAAGAACCAAGCCAATCGACCGGC
TGGTTTCACACTCCAAAGCGTGGCGGCTCGACCACGCTCAAGAGGGTGGG
TAGCGCTACGCTCAACCGACATTAGGGACAGTATGAAGATCCACGGTAAC
TGGATGTCAGACTCACAGGATCTTCGAACACTAGTACATGGACTGAAACT
ATGTCGGCAGATTGCGCAACAGGATGATATGAATGAATATCGCGGACGCG
AGTTGTATCCCGGTGGGGAGGTAGTGTCTGACAGCGACCTAGAAAAGTAT
GTAGTGGATACTTGTCACACTGCGAACGCGATGGTTGGGACGTGTCGAAT
GGGAAGTGGGGATGACTGTGCGGTTGATGCGGAACTTCGGGTGAAGGGGA
TAGAGGGATTGAGGGTCATTGACTCGTCTGTGATGCCTAACTTGCCGGGC
GGTCAGTCTGGGGCTCCGACGATGATGATTGCCGAAAAGGGGGCGGACCT
GGTGTTGCAGTCGCAGCAAAGCTTAGTGGGTGCCGTAAGCGCGTCGCGCG
GATAG