Ggra4492.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4492.t1
Unique Name	Ggra4492.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:643025..644221 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1336803.PHEL49_0595
PFAMs	Lactonase
Max annot lvl	976\|Bacteroidetes
KEGG rclass	RC00537
KEGG ko	ko:K07404
KEGG Reaction	R02035
KEGG Pathway	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
KEGG Module	M00004,M00006,M00008
Evalue	1.82e-17
EggNOG OGs	COG2706@1\|root,COG2706@2\|Bacteria,4NE87@976\|Bacteroidetes,1I0Q4@117743\|Flavobacteriia,3VW4G@52959\|Polaribacter
EC	3.1.1.31
Description	Lactonase, 7-bladed beta-propeller
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4492	Ggra4492	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 643025..644221 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4492.t1.start1	Ggra4492.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 643025..643027 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4492.t1.CDS1	Ggra4492.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 643025..644221 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4492.t1.exon1	Ggra4492.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 643025..644221 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4492.t1.stop1	Ggra4492.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 644219..644221 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4492.t1	Ggra4492.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 643025..644221 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:643025..644221+
coding sequence from alignment at tig00000898_pilon:643025..644221+

mRNA sequence

>Ggra4492.t1 ID=Ggra4492.t1|Name=Ggra4492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp
MISTAVVFALFTLLKLSVQSVATKCPSTLSLAVGSYTNHAWFLESKGEGV
YIVDYENDKLSVSQVLNTSITNENPSYVTVQKPFLYVANENFSPVFRYNG
SVTRIFLSKDRQAVSSKFANATGFFTTYVAVHPRNRNLVLGANFLSSFDT
YISDGDDFRRADSFIVPDELASEIVTNMTLGPMFRQPHPHIVLPYRRGVV
VCDAGSNLVWYFRLNRRTGKVALINRVAFRTTDGPRHAVQHTRSNTLYIL
NEVSVSLAVLKPSKDGLALKYMIDVLDDKPEEVTLAAIRTTKDGRFLYVS
VRYPGTTDGAIVGYRLNRRTGDIIRKIGMWSTFGVHPRDFNLIERARFEG
RCVSFVAAVHRDSDSLVLIERDRRSGMLKLHPAMTLNVSTPTSVVPMW*

spliced messenger RNA

>Ggra4492.t1 ID=Ggra4492.t1|Name=Ggra4492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000898_pilon:643025..644221+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCTACCGCGGTCGTTTTCGCGCTGTTCACGTTGCTAAAACTGTC
CGTTCAATCGGTCGCCACAAAATGTCCGTCGACACTCAGTCTCGCTGTTG
GAAGCTATACCAATCATGCATGGTTCCTAGAATCAAAGGGCGAAGGAGTA
TACATCGTCGATTACGAAAACGACAAGTTGAGTGTGTCTCAAGTGTTGAA
TACTTCCATTACAAATGAAAACCCGTCGTATGTGACGGTGCAAAAACCAT
TTCTCTATGTCGCGAACGAGAACTTCAGCCCTGTCTTCCGATATAACGGA
TCTGTAACAAGGATCTTTTTGTCGAAAGACAGACAAGCAGTGTCATCAAA
GTTCGCAAATGCGACGGGCTTCTTCACGACGTATGTAGCTGTGCATCCGC
GGAATAGGAACCTTGTACTGGGCGCTAATTTCCTCAGCTCTTTTGACACT
TACATCAGTGATGGAGATGATTTCAGGCGAGCAGACTCGTTCATTGTACC
AGATGAACTTGCTTCGGAAATTGTTACGAACATGACATTGGGTCCAATGT
TCCGTCAACCACATCCACATATCGTGCTTCCATACAGAAGAGGTGTAGTG
GTCTGCGATGCAGGGTCGAATCTTGTGTGGTACTTCCGATTGAACCGGCG
CACCGGGAAAGTGGCATTAATTAACAGGGTGGCATTCCGAACTACAGATG
GACCACGGCATGCCGTGCAACATACCAGGTCAAATACGCTCTACATTTTG
AACGAGGTTTCTGTATCGCTTGCAGTGCTTAAGCCATCGAAAGATGGACT
TGCTCTGAAGTACATGATAGATGTACTCGACGACAAACCGGAGGAAGTAA
CTCTTGCGGCCATTCGTACTACAAAAGATGGCCGATTCCTGTATGTTTCG
GTGAGATATCCAGGCACGACTGATGGAGCGATTGTGGGTTACAGGCTTAA
CCGTCGTACTGGTGATATTATTCGTAAGATTGGGATGTGGAGTACGTTTG
GAGTGCACCCAAGGGACTTCAACCTGATAGAGAGAGCAAGATTTGAGGGC
CGATGTGTTAGCTTTGTCGCGGCAGTTCATCGAGATTCTGATAGTCTTGT
TCTTATTGAGAGAGATAGAAGATCGGGAATGTTGAAGCTGCACCCGGCCA
TGACGCTCAATGTGTCGACGCCCACTTCGGTGGTTCCGATGTGGTGA

protein sequence of Ggra4492.t1

>Ggra4492.t1 ID=Ggra4492.t1|Name=Ggra4492.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MISTAVVFALFTLLKLSVQSVATKCPSTLSLAVGSYTNHAWFLESKGEGV
YIVDYENDKLSVSQVLNTSITNENPSYVTVQKPFLYVANENFSPVFRYNG
SVTRIFLSKDRQAVSSKFANATGFFTTYVAVHPRNRNLVLGANFLSSFDT
YISDGDDFRRADSFIVPDELASEIVTNMTLGPMFRQPHPHIVLPYRRGVV
VCDAGSNLVWYFRLNRRTGKVALINRVAFRTTDGPRHAVQHTRSNTLYIL
NEVSVSLAVLKPSKDGLALKYMIDVLDDKPEEVTLAAIRTTKDGRFLYVS
VRYPGTTDGAIVGYRLNRRTGDIIRKIGMWSTFGVHPRDFNLIERARFEG
RCVSFVAAVHRDSDSLVLIERDRRSGMLKLHPAMTLNVSTPTSVVPMW*

mRNA from alignment at tig00000898_pilon:643025..644221+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4492.t1 ID=Ggra4492.t1|Name=Ggra4492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000898_pilon:643025..644221+ (Gracilaria gracilis GNS1m male)
ATGATTTCTACCGCGGTCGTTTTCGCGCTGTTCACGTTGCTAAAACTGTC
CGTTCAATCGGTCGCCACAAAATGTCCGTCGACACTCAGTCTCGCTGTTG
GAAGCTATACCAATCATGCATGGTTCCTAGAATCAAAGGGCGAAGGAGTA
TACATCGTCGATTACGAAAACGACAAGTTGAGTGTGTCTCAAGTGTTGAA
TACTTCCATTACAAATGAAAACCCGTCGTATGTGACGGTGCAAAAACCAT
TTCTCTATGTCGCGAACGAGAACTTCAGCCCTGTCTTCCGATATAACGGA
TCTGTAACAAGGATCTTTTTGTCGAAAGACAGACAAGCAGTGTCATCAAA
GTTCGCAAATGCGACGGGCTTCTTCACGACGTATGTAGCTGTGCATCCGC
GGAATAGGAACCTTGTACTGGGCGCTAATTTCCTCAGCTCTTTTGACACT
TACATCAGTGATGGAGATGATTTCAGGCGAGCAGACTCGTTCATTGTACC
AGATGAACTTGCTTCGGAAATTGTTACGAACATGACATTGGGTCCAATGT
TCCGTCAACCACATCCACATATCGTGCTTCCATACAGAAGAGGTGTAGTG
GTCTGCGATGCAGGGTCGAATCTTGTGTGGTACTTCCGATTGAACCGGCG
CACCGGGAAAGTGGCATTAATTAACAGGGTGGCATTCCGAACTACAGATG
GACCACGGCATGCCGTGCAACATACCAGGTCAAATACGCTCTACATTTTG
AACGAGGTTTCTGTATCGCTTGCAGTGCTTAAGCCATCGAAAGATGGACT
TGCTCTGAAGTACATGATAGATGTACTCGACGACAAACCGGAGGAAGTAA
CTCTTGCGGCCATTCGTACTACAAAAGATGGCCGATTCCTGTATGTTTCG
GTGAGATATCCAGGCACGACTGATGGAGCGATTGTGGGTTACAGGCTTAA
CCGTCGTACTGGTGATATTATTCGTAAGATTGGGATGTGGAGTACGTTTG
GAGTGCACCCAAGGGACTTCAACCTGATAGAGAGAGCAAGATTTGAGGGC
CGATGTGTTAGCTTTGTCGCGGCAGTTCATCGAGATTCTGATAGTCTTGT
TCTTATTGAGAGAGATAGAAGATCGGGAATGTTGAAGCTGCACCCGGCCA
TGACGCTCAATGTGTCGACGCCCACTTCGGTGGTTCCGATGTGGTGA

Coding sequence (CDS) from alignment at tig00000898_pilon:643025..644221+

>Ggra4492.t1 ID=Ggra4492.t1|Name=Ggra4492.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000898_pilon:643025..644221+ (Gracilaria gracilis GNS1m male)
ATGATTTCTACCGCGGTCGTTTTCGCGCTGTTCACGTTGCTAAAACTGTC
CGTTCAATCGGTCGCCACAAAATGTCCGTCGACACTCAGTCTCGCTGTTG
GAAGCTATACCAATCATGCATGGTTCCTAGAATCAAAGGGCGAAGGAGTA
TACATCGTCGATTACGAAAACGACAAGTTGAGTGTGTCTCAAGTGTTGAA
TACTTCCATTACAAATGAAAACCCGTCGTATGTGACGGTGCAAAAACCAT
TTCTCTATGTCGCGAACGAGAACTTCAGCCCTGTCTTCCGATATAACGGA
TCTGTAACAAGGATCTTTTTGTCGAAAGACAGACAAGCAGTGTCATCAAA
GTTCGCAAATGCGACGGGCTTCTTCACGACGTATGTAGCTGTGCATCCGC
GGAATAGGAACCTTGTACTGGGCGCTAATTTCCTCAGCTCTTTTGACACT
TACATCAGTGATGGAGATGATTTCAGGCGAGCAGACTCGTTCATTGTACC
AGATGAACTTGCTTCGGAAATTGTTACGAACATGACATTGGGTCCAATGT
TCCGTCAACCACATCCACATATCGTGCTTCCATACAGAAGAGGTGTAGTG
GTCTGCGATGCAGGGTCGAATCTTGTGTGGTACTTCCGATTGAACCGGCG
CACCGGGAAAGTGGCATTAATTAACAGGGTGGCATTCCGAACTACAGATG
GACCACGGCATGCCGTGCAACATACCAGGTCAAATACGCTCTACATTTTG
AACGAGGTTTCTGTATCGCTTGCAGTGCTTAAGCCATCGAAAGATGGACT
TGCTCTGAAGTACATGATAGATGTACTCGACGACAAACCGGAGGAAGTAA
CTCTTGCGGCCATTCGTACTACAAAAGATGGCCGATTCCTGTATGTTTCG
GTGAGATATCCAGGCACGACTGATGGAGCGATTGTGGGTTACAGGCTTAA
CCGTCGTACTGGTGATATTATTCGTAAGATTGGGATGTGGAGTACGTTTG
GAGTGCACCCAAGGGACTTCAACCTGATAGAGAGAGCAAGATTTGAGGGC
CGATGTGTTAGCTTTGTCGCGGCAGTTCATCGAGATTCTGATAGTCTTGT
TCTTATTGAGAGAGATAGAAGATCGGGAATGTTGAAGCTGCACCCGGCCA
TGACGCTCAATGTGTCGACGCCCACTTCGGTGGTTCCGATGTGGTGA