Ggra4463.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4463.t1
Unique NameGgra4463.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:565729..567258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4463Ggra4463Gracilaria gracilis GNS1m malegenetig00000898_pilon 565729..567258 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4463.t1.stop1Ggra4463.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 565729..565731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4463.t1.CDS1Ggra4463.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 565729..567258 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4463.t1.exon1Ggra4463.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 565729..567258 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4463.t1.start1Ggra4463.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 567256..567258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4463.t1Ggra4463.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 565729..567258 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4463.t1 ID=Ggra4463.t1|Name=Ggra4463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MVQLEPSDLSPVESLISSLQTKLRQARQQNQKNEALILFYQRRLIKLLRK
RAQDEIQRVTSPTKPSDTNQQSAASKSTPNRSPNSFDRLARLSTDLDVSR
SKVRELTEQNLALSRQLKDRDETIASDAAELAELRQKDLHARDMQMQLKF
VQSEKEALQIRTNTIETENTLRLSLGERNAQLLQEEVKRLHEELVTTRCE
ADAAAASSSAALRTANDLQSNLSQQLLEAKSTNTRMEQYVADLEKQLTSS
RTDSEQQRNSSEQETARLKEIADIQKQMTTQAEQRVKDYEAIIETLQQEL
QEKEQQPTTIRSVQSHTEVLLRSMEQTLDSKQAELRQLYLEQQKLKALHS
NMVQNEQALKRTADEAREEAKQAQREVLRLKAIMKEQSKRRERSEPLQSA
VRASHEARRLSFGTSSAAGRESGSGRISGLGRSSAFGQEPGRDSGFGRQP
DFDDPEIGPRSTIPLHPPRQERSITDVDAQLQELFNIRMRHQKILNALHE
QRNMRMSTE*
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spliced messenger RNA

>Ggra4463.t1 ID=Ggra4463.t1|Name=Ggra4463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000898_pilon:565729..567258- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAACTCGAACCCAGCGACCTATCGCCCGTTGAGAGCCTCATATC
CTCCCTTCAGACTAAGTTGAGACAAGCTCGCCAGCAAAACCAAAAGAATG
AGGCTCTCATTCTATTCTATCAACGCCGATTAATCAAACTACTTCGAAAG
CGGGCGCAAGACGAGATCCAACGCGTCACATCCCCGACCAAACCCAGCGA
CACAAATCAGCAATCCGCCGCTTCCAAGTCCACCCCCAATCGTTCACCCA
ACTCCTTCGACAGGCTCGCCCGCCTGTCCACCGATTTGGACGTATCACGA
TCAAAGGTCAGGGAACTCACCGAACAAAACCTCGCTCTTTCTCGACAGCT
CAAAGACCGTGATGAAACCATTGCATCCGATGCCGCTGAACTGGCCGAAC
TGCGTCAGAAAGACCTGCACGCCCGTGATATGCAAATGCAGCTCAAATTC
GTGCAATCGGAGAAAGAGGCGTTACAGATTCGGACCAATACCATAGAAAC
CGAAAATACTCTGCGTCTCAGTTTAGGAGAACGGAATGCCCAATTATTGC
AAGAAGAGGTGAAGCGCCTGCATGAGGAGTTGGTCACTACGCGATGTGAG
GCCGATGCCGCTGCGGCATCCAGTTCTGCGGCGTTGAGAACTGCAAATGA
TTTGCAGAGCAATTTGAGTCAACAGTTGCTTGAAGCTAAGTCCACCAACA
CACGCATGGAGCAATACGTCGCGGATCTTGAGAAGCAACTAACTTCATCC
AGGACTGATTCAGAGCAACAACGCAATTCAAGCGAACAGGAAACCGCTCG
TCTCAAAGAAATTGCCGATATTCAAAAACAAATGACCACTCAGGCCGAGC
AAAGAGTGAAAGACTACGAAGCAATCATAGAAACGTTACAGCAAGAACTG
CAAGAGAAGGAACAACAACCTACAACAATAAGATCGGTTCAGTCGCACAC
CGAGGTCCTGCTAAGAAGCATGGAACAAACCTTGGACTCCAAACAAGCCG
AACTACGTCAACTTTATCTTGAGCAACAAAAACTCAAAGCCCTTCATTCG
AACATGGTACAGAATGAACAGGCTCTCAAGAGAACGGCCGACGAAGCGCG
AGAAGAAGCTAAACAAGCTCAGAGAGAGGTTCTACGTCTCAAGGCCATCA
TGAAAGAACAATCGAAGCGAAGAGAACGCAGCGAACCACTGCAAAGCGCA
GTGAGGGCTTCGCATGAGGCCCGCCGTCTTAGCTTTGGCACCTCCAGCGC
AGCTGGAAGAGAATCCGGTTCCGGACGCATCTCCGGACTTGGGCGAAGCT
CGGCGTTTGGACAAGAACCTGGCAGAGATTCAGGCTTCGGTCGACAACCT
GATTTCGATGATCCTGAGATTGGACCTCGCTCGACAATCCCACTTCATCC
TCCTCGTCAGGAGAGGTCTATCACAGATGTTGATGCTCAGCTGCAAGAAT
TGTTTAACATTCGTATGCGGCATCAAAAGATTTTAAACGCATTGCATGAA
CAACGAAATATGAGAATGTCAACCGAGTGA
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protein sequence of Ggra4463.t1

>Ggra4463.t1 ID=Ggra4463.t1|Name=Ggra4463.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MVQLEPSDLSPVESLISSLQTKLRQARQQNQKNEALILFYQRRLIKLLRK
RAQDEIQRVTSPTKPSDTNQQSAASKSTPNRSPNSFDRLARLSTDLDVSR
SKVRELTEQNLALSRQLKDRDETIASDAAELAELRQKDLHARDMQMQLKF
VQSEKEALQIRTNTIETENTLRLSLGERNAQLLQEEVKRLHEELVTTRCE
ADAAAASSSAALRTANDLQSNLSQQLLEAKSTNTRMEQYVADLEKQLTSS
RTDSEQQRNSSEQETARLKEIADIQKQMTTQAEQRVKDYEAIIETLQQEL
QEKEQQPTTIRSVQSHTEVLLRSMEQTLDSKQAELRQLYLEQQKLKALHS
NMVQNEQALKRTADEAREEAKQAQREVLRLKAIMKEQSKRRERSEPLQSA
VRASHEARRLSFGTSSAAGRESGSGRISGLGRSSAFGQEPGRDSGFGRQP
DFDDPEIGPRSTIPLHPPRQERSITDVDAQLQELFNIRMRHQKILNALHE
QRNMRMSTE*
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mRNA from alignment at tig00000898_pilon:565729..567258-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4463.t1 ID=Ggra4463.t1|Name=Ggra4463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000898_pilon:565729..567258- (Gracilaria gracilis GNS1m male)
ATGGTGCAACTCGAACCCAGCGACCTATCGCCCGTTGAGAGCCTCATATC
CTCCCTTCAGACTAAGTTGAGACAAGCTCGCCAGCAAAACCAAAAGAATG
AGGCTCTCATTCTATTCTATCAACGCCGATTAATCAAACTACTTCGAAAG
CGGGCGCAAGACGAGATCCAACGCGTCACATCCCCGACCAAACCCAGCGA
CACAAATCAGCAATCCGCCGCTTCCAAGTCCACCCCCAATCGTTCACCCA
ACTCCTTCGACAGGCTCGCCCGCCTGTCCACCGATTTGGACGTATCACGA
TCAAAGGTCAGGGAACTCACCGAACAAAACCTCGCTCTTTCTCGACAGCT
CAAAGACCGTGATGAAACCATTGCATCCGATGCCGCTGAACTGGCCGAAC
TGCGTCAGAAAGACCTGCACGCCCGTGATATGCAAATGCAGCTCAAATTC
GTGCAATCGGAGAAAGAGGCGTTACAGATTCGGACCAATACCATAGAAAC
CGAAAATACTCTGCGTCTCAGTTTAGGAGAACGGAATGCCCAATTATTGC
AAGAAGAGGTGAAGCGCCTGCATGAGGAGTTGGTCACTACGCGATGTGAG
GCCGATGCCGCTGCGGCATCCAGTTCTGCGGCGTTGAGAACTGCAAATGA
TTTGCAGAGCAATTTGAGTCAACAGTTGCTTGAAGCTAAGTCCACCAACA
CACGCATGGAGCAATACGTCGCGGATCTTGAGAAGCAACTAACTTCATCC
AGGACTGATTCAGAGCAACAACGCAATTCAAGCGAACAGGAAACCGCTCG
TCTCAAAGAAATTGCCGATATTCAAAAACAAATGACCACTCAGGCCGAGC
AAAGAGTGAAAGACTACGAAGCAATCATAGAAACGTTACAGCAAGAACTG
CAAGAGAAGGAACAACAACCTACAACAATAAGATCGGTTCAGTCGCACAC
CGAGGTCCTGCTAAGAAGCATGGAACAAACCTTGGACTCCAAACAAGCCG
AACTACGTCAACTTTATCTTGAGCAACAAAAACTCAAAGCCCTTCATTCG
AACATGGTACAGAATGAACAGGCTCTCAAGAGAACGGCCGACGAAGCGCG
AGAAGAAGCTAAACAAGCTCAGAGAGAGGTTCTACGTCTCAAGGCCATCA
TGAAAGAACAATCGAAGCGAAGAGAACGCAGCGAACCACTGCAAAGCGCA
GTGAGGGCTTCGCATGAGGCCCGCCGTCTTAGCTTTGGCACCTCCAGCGC
AGCTGGAAGAGAATCCGGTTCCGGACGCATCTCCGGACTTGGGCGAAGCT
CGGCGTTTGGACAAGAACCTGGCAGAGATTCAGGCTTCGGTCGACAACCT
GATTTCGATGATCCTGAGATTGGACCTCGCTCGACAATCCCACTTCATCC
TCCTCGTCAGGAGAGGTCTATCACAGATGTTGATGCTCAGCTGCAAGAAT
TGTTTAACATTCGTATGCGGCATCAAAAGATTTTAAACGCATTGCATGAA
CAACGAAATATGAGAATGTCAACCGAGTGA
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Coding sequence (CDS) from alignment at tig00000898_pilon:565729..567258-

>Ggra4463.t1 ID=Ggra4463.t1|Name=Ggra4463.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000898_pilon:565729..567258- (Gracilaria gracilis GNS1m male)
ATGGTGCAACTCGAACCCAGCGACCTATCGCCCGTTGAGAGCCTCATATC
CTCCCTTCAGACTAAGTTGAGACAAGCTCGCCAGCAAAACCAAAAGAATG
AGGCTCTCATTCTATTCTATCAACGCCGATTAATCAAACTACTTCGAAAG
CGGGCGCAAGACGAGATCCAACGCGTCACATCCCCGACCAAACCCAGCGA
CACAAATCAGCAATCCGCCGCTTCCAAGTCCACCCCCAATCGTTCACCCA
ACTCCTTCGACAGGCTCGCCCGCCTGTCCACCGATTTGGACGTATCACGA
TCAAAGGTCAGGGAACTCACCGAACAAAACCTCGCTCTTTCTCGACAGCT
CAAAGACCGTGATGAAACCATTGCATCCGATGCCGCTGAACTGGCCGAAC
TGCGTCAGAAAGACCTGCACGCCCGTGATATGCAAATGCAGCTCAAATTC
GTGCAATCGGAGAAAGAGGCGTTACAGATTCGGACCAATACCATAGAAAC
CGAAAATACTCTGCGTCTCAGTTTAGGAGAACGGAATGCCCAATTATTGC
AAGAAGAGGTGAAGCGCCTGCATGAGGAGTTGGTCACTACGCGATGTGAG
GCCGATGCCGCTGCGGCATCCAGTTCTGCGGCGTTGAGAACTGCAAATGA
TTTGCAGAGCAATTTGAGTCAACAGTTGCTTGAAGCTAAGTCCACCAACA
CACGCATGGAGCAATACGTCGCGGATCTTGAGAAGCAACTAACTTCATCC
AGGACTGATTCAGAGCAACAACGCAATTCAAGCGAACAGGAAACCGCTCG
TCTCAAAGAAATTGCCGATATTCAAAAACAAATGACCACTCAGGCCGAGC
AAAGAGTGAAAGACTACGAAGCAATCATAGAAACGTTACAGCAAGAACTG
CAAGAGAAGGAACAACAACCTACAACAATAAGATCGGTTCAGTCGCACAC
CGAGGTCCTGCTAAGAAGCATGGAACAAACCTTGGACTCCAAACAAGCCG
AACTACGTCAACTTTATCTTGAGCAACAAAAACTCAAAGCCCTTCATTCG
AACATGGTACAGAATGAACAGGCTCTCAAGAGAACGGCCGACGAAGCGCG
AGAAGAAGCTAAACAAGCTCAGAGAGAGGTTCTACGTCTCAAGGCCATCA
TGAAAGAACAATCGAAGCGAAGAGAACGCAGCGAACCACTGCAAAGCGCA
GTGAGGGCTTCGCATGAGGCCCGCCGTCTTAGCTTTGGCACCTCCAGCGC
AGCTGGAAGAGAATCCGGTTCCGGACGCATCTCCGGACTTGGGCGAAGCT
CGGCGTTTGGACAAGAACCTGGCAGAGATTCAGGCTTCGGTCGACAACCT
GATTTCGATGATCCTGAGATTGGACCTCGCTCGACAATCCCACTTCATCC
TCCTCGTCAGGAGAGGTCTATCACAGATGTTGATGCTCAGCTGCAAGAAT
TGTTTAACATTCGTATGCGGCATCAAAAGATTTTAAACGCATTGCATGAA
CAACGAAATATGAGAATGTCAACCGAGTGA
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