Ggra4467.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4467.t1
Unique NameGgra4467.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:574583..575599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008779598.1
PFAMsTPT
Max annot lvl35493|Streptophyta
KEGG koko:K15281
KEGG TC2.A.7.15
GOsGO:0003674,GO:0005215,GO:0005338,GO:0005459,GO:0005460,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0007275,GO:0008150,GO:0008509,GO:0008514,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0015075,GO:0015165,GO:0015711,GO:0015780,GO:0015786,GO:0015931,GO:0015932,GO:0021700,GO:0022622,GO:0022857,GO:0030154,GO:0032501,GO:0032502,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048527,GO:0048528,GO:0048731,GO:0048764,GO:0048765,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0055085,GO:0071695,GO:0071702,GO:0071705,GO:0072334,GO:0080147,GO:0090481,GO:0090558,GO:0090627,GO:0090696,GO:0098656,GO:0099402,GO:1901264,GO:1901505,GO:1905392
Evalue3.49e-48
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota,37M7F@33090|Viridiplantae,3GCD9@35493|Streptophyta,3KRAS@4447|Liliopsida
DescriptionUAA transporter family
COG categoryGOU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4467Ggra4467Gracilaria gracilis GNS1m malegenetig00000898_pilon 574583..575599 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4467.t1.stop1Ggra4467.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 574583..574585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4467.t1.CDS1Ggra4467.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 574583..575599 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4467.t1.exon1Ggra4467.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 574583..575599 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4467.t1.start1Ggra4467.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 575597..575599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4467.t1Ggra4467.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 574583..575599 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4467.t1 ID=Ggra4467.t1|Name=Ggra4467.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MTVHTREEDPKSHRVRLLPEKEDKLDAAPSEEQVRRTIVVSLSVCLFYIL
VSSSMVFTNKALSYSYGFRTTNVLLFFQMIFTVALLRFLRTAKLIEFADF
ELSRAKQVAPVSIFYSLNAAVALVALRELSVPSYTLIKRLSPLFTIALEA
LLLQKYATRSIILALLVMASGTVLAANADTSSSSFAWLLGFASCAFQALY
LTFVKRSGIDTGMNSFGILYYHSILSIPCITAIAIAVGELGPALVFDKWT
SPTFLIIFFASLFMGLLLNYALFLCTELTSPTSTVVSGQVKAMGQTVIGV
FTFGGVEMNMRYTWGTLLNISGGFMYAYAKLKLLRERG*
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spliced messenger RNA

>Ggra4467.t1 ID=Ggra4467.t1|Name=Ggra4467.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000898_pilon:574583..575599- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTCCACACTCGCGAAGAAGACCCCAAGTCGCATCGAGTTCGCCT
CCTCCCTGAAAAGGAGGATAAACTCGATGCTGCGCCCAGCGAAGAGCAGG
TGCGCCGCACCATCGTCGTTTCTCTCTCTGTCTGTCTTTTTTACATCCTG
GTCTCCTCATCAATGGTTTTCACCAACAAGGCACTGAGTTACAGTTACGG
CTTTCGCACCACCAACGTTTTGCTCTTCTTTCAAATGATTTTCACCGTGG
CGCTTCTTCGTTTCTTACGTACTGCAAAGCTTATCGAATTTGCTGATTTC
GAACTGTCGCGTGCGAAGCAGGTAGCACCTGTCTCTATTTTCTATTCTCT
CAATGCTGCAGTCGCGTTAGTCGCCCTTCGTGAGCTCTCCGTGCCCAGTT
ACACGCTCATTAAGCGCCTCTCACCGCTTTTCACCATCGCATTGGAAGCA
TTGTTGCTACAAAAGTACGCCACGCGTTCTATCATCCTGGCACTGCTTGT
CATGGCTTCGGGAACCGTCTTAGCCGCAAACGCTGACACATCTAGCTCGT
CGTTTGCCTGGCTCTTGGGCTTCGCCTCGTGTGCTTTCCAAGCTTTGTAT
CTCACATTCGTTAAGCGCTCCGGCATAGACACGGGTATGAATTCTTTTGG
CATTCTTTACTACCATAGCATTTTGTCAATCCCTTGTATCACTGCAATCG
CTATTGCAGTAGGAGAGCTGGGCCCCGCATTGGTCTTCGACAAATGGACC
TCCCCAACCTTCCTCATCATCTTCTTTGCCTCTCTTTTCATGGGGCTTTT
ACTCAACTACGCACTGTTTTTGTGTACTGAACTCACCTCGCCTACAAGCA
CGGTTGTCTCTGGTCAGGTGAAAGCTATGGGTCAAACAGTAATTGGAGTA
TTCACGTTTGGTGGTGTGGAAATGAATATGCGGTATACATGGGGTACATT
GCTCAATATTTCCGGTGGGTTTATGTATGCCTATGCAAAGCTCAAACTTC
TACGTGAGCGTGGCTAA
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protein sequence of Ggra4467.t1

>Ggra4467.t1 ID=Ggra4467.t1|Name=Ggra4467.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MTVHTREEDPKSHRVRLLPEKEDKLDAAPSEEQVRRTIVVSLSVCLFYIL
VSSSMVFTNKALSYSYGFRTTNVLLFFQMIFTVALLRFLRTAKLIEFADF
ELSRAKQVAPVSIFYSLNAAVALVALRELSVPSYTLIKRLSPLFTIALEA
LLLQKYATRSIILALLVMASGTVLAANADTSSSSFAWLLGFASCAFQALY
LTFVKRSGIDTGMNSFGILYYHSILSIPCITAIAIAVGELGPALVFDKWT
SPTFLIIFFASLFMGLLLNYALFLCTELTSPTSTVVSGQVKAMGQTVIGV
FTFGGVEMNMRYTWGTLLNISGGFMYAYAKLKLLRERG*
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mRNA from alignment at tig00000898_pilon:574583..575599-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4467.t1 ID=Ggra4467.t1|Name=Ggra4467.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000898_pilon:574583..575599- (Gracilaria gracilis GNS1m male)
ATGACGGTCCACACTCGCGAAGAAGACCCCAAGTCGCATCGAGTTCGCCT
CCTCCCTGAAAAGGAGGATAAACTCGATGCTGCGCCCAGCGAAGAGCAGG
TGCGCCGCACCATCGTCGTTTCTCTCTCTGTCTGTCTTTTTTACATCCTG
GTCTCCTCATCAATGGTTTTCACCAACAAGGCACTGAGTTACAGTTACGG
CTTTCGCACCACCAACGTTTTGCTCTTCTTTCAAATGATTTTCACCGTGG
CGCTTCTTCGTTTCTTACGTACTGCAAAGCTTATCGAATTTGCTGATTTC
GAACTGTCGCGTGCGAAGCAGGTAGCACCTGTCTCTATTTTCTATTCTCT
CAATGCTGCAGTCGCGTTAGTCGCCCTTCGTGAGCTCTCCGTGCCCAGTT
ACACGCTCATTAAGCGCCTCTCACCGCTTTTCACCATCGCATTGGAAGCA
TTGTTGCTACAAAAGTACGCCACGCGTTCTATCATCCTGGCACTGCTTGT
CATGGCTTCGGGAACCGTCTTAGCCGCAAACGCTGACACATCTAGCTCGT
CGTTTGCCTGGCTCTTGGGCTTCGCCTCGTGTGCTTTCCAAGCTTTGTAT
CTCACATTCGTTAAGCGCTCCGGCATAGACACGGGTATGAATTCTTTTGG
CATTCTTTACTACCATAGCATTTTGTCAATCCCTTGTATCACTGCAATCG
CTATTGCAGTAGGAGAGCTGGGCCCCGCATTGGTCTTCGACAAATGGACC
TCCCCAACCTTCCTCATCATCTTCTTTGCCTCTCTTTTCATGGGGCTTTT
ACTCAACTACGCACTGTTTTTGTGTACTGAACTCACCTCGCCTACAAGCA
CGGTTGTCTCTGGTCAGGTGAAAGCTATGGGTCAAACAGTAATTGGAGTA
TTCACGTTTGGTGGTGTGGAAATGAATATGCGGTATACATGGGGTACATT
GCTCAATATTTCCGGTGGGTTTATGTATGCCTATGCAAAGCTCAAACTTC
TACGTGAGCGTGGCTAA
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Coding sequence (CDS) from alignment at tig00000898_pilon:574583..575599-

>Ggra4467.t1 ID=Ggra4467.t1|Name=Ggra4467.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000898_pilon:574583..575599- (Gracilaria gracilis GNS1m male)
ATGACGGTCCACACTCGCGAAGAAGACCCCAAGTCGCATCGAGTTCGCCT
CCTCCCTGAAAAGGAGGATAAACTCGATGCTGCGCCCAGCGAAGAGCAGG
TGCGCCGCACCATCGTCGTTTCTCTCTCTGTCTGTCTTTTTTACATCCTG
GTCTCCTCATCAATGGTTTTCACCAACAAGGCACTGAGTTACAGTTACGG
CTTTCGCACCACCAACGTTTTGCTCTTCTTTCAAATGATTTTCACCGTGG
CGCTTCTTCGTTTCTTACGTACTGCAAAGCTTATCGAATTTGCTGATTTC
GAACTGTCGCGTGCGAAGCAGGTAGCACCTGTCTCTATTTTCTATTCTCT
CAATGCTGCAGTCGCGTTAGTCGCCCTTCGTGAGCTCTCCGTGCCCAGTT
ACACGCTCATTAAGCGCCTCTCACCGCTTTTCACCATCGCATTGGAAGCA
TTGTTGCTACAAAAGTACGCCACGCGTTCTATCATCCTGGCACTGCTTGT
CATGGCTTCGGGAACCGTCTTAGCCGCAAACGCTGACACATCTAGCTCGT
CGTTTGCCTGGCTCTTGGGCTTCGCCTCGTGTGCTTTCCAAGCTTTGTAT
CTCACATTCGTTAAGCGCTCCGGCATAGACACGGGTATGAATTCTTTTGG
CATTCTTTACTACCATAGCATTTTGTCAATCCCTTGTATCACTGCAATCG
CTATTGCAGTAGGAGAGCTGGGCCCCGCATTGGTCTTCGACAAATGGACC
TCCCCAACCTTCCTCATCATCTTCTTTGCCTCTCTTTTCATGGGGCTTTT
ACTCAACTACGCACTGTTTTTGTGTACTGAACTCACCTCGCCTACAAGCA
CGGTTGTCTCTGGTCAGGTGAAAGCTATGGGTCAAACAGTAATTGGAGTA
TTCACGTTTGGTGGTGTGGAAATGAATATGCGGTATACATGGGGTACATT
GCTCAATATTTCCGGTGGGTTTATGTATGCCTATGCAAAGCTCAAACTTC
TACGTGAGCGTGGCTAA
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