Ggra8480.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8480.t1
Unique NameGgra8480.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length469
Homology
BLAST of Ggra8480.t1 vs. uniprot
Match: A0A2V3ITE0 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITE0_9FLOR)

HSP 1 Score: 623 bits (1606), Expect = 2.020e-219
Identity = 321/460 (69.78%), Postives = 375/460 (81.52%), Query Frame = 0
Query:   15 DDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFAGLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDA-SXXXXXXXXXXXXXXXXXXXSSQERSSSGLGAELAHRGKRGAVVSEKPRLDLLFVFDASGALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELDRDLDAVRRRILSSFQGDANNWDTNDMYIYEVGDQMWGNALRKVDSLVNDPGKNNDIQTI-----SEGDIEEPPTVQATEVPPAMNGMCREAHLALKWSRYEMIPPAANKHIQSQLLNAQRLRRVVLINAGELTKGGTSGQGLKTAFKEKMEMEKLGIRLVTIGIGESQDPELSKLGTGKSSLNASSVAEVVNLVPKLVEMIVRSDYRFDGQVLRSAPVIRKRMKKSREKAKEKRKHIYNALRLKNNDADENVRKGISRRASELPPWFTDSENI 468
            DD+SPW  VWRSASEL ESIVEMGQE AA+VGGQFAGLL+PG ARVRPPQVITRLA+PGMC+ALSQLSPDS  SDA S                   SSQE SS+ +  E      R  + + KPRLDLLFVFDASGA+SWRDYR++KEILS+PGG+IDNVQ +VHDGSR+GFVEYAYDSVVVSELDRD DAVRRRILSSFQGDANNWD+N+MYIYEVGD +WGNALRKVDSLVN  G+     T      SEGDIEE P VQATEVPPAMNGMCRE HLALKWSRYE+IPPAANKHIQSQL NAQRLRRVVL N GELTKGGTS QG K+A +EK+EME+LGIRL+T+GIG+ Q+ EL KL TGKS ++  SV E+V  VP+LV+MIV+SD RFDGQ++R+ PV+R+RMKKSR++AKEKR+ +Y AL ++N+++ + + KGI RRASELPPWFTD++N+
Sbjct:   60 DDESPWGQVWRSASELPESIVEMGQEVAASVGGQFAGLLRPGAARVRPPQVITRLAIPGMCMALSQLSPDSIESDAMSSNSGQSSEPPSFRSSRVSSSSQEHSSAVMRMETVSDKTRRNLAAYKPRLDLLFVFDASGAMSWRDYRKLKEILSSPGGIIDNVQSRVHDGSRIGFVEYAYDSVVVSELDRDSDAVRRRILSSFQGDANNWDSNNMYIYEVGDVIWGNALRKVDSLVNSNGRTGSSLTSGMGASSEGDIEESPIVQATEVPPAMNGMCREVHLALKWSRYEIIPPAANKHIQSQLQNAQRLRRVVLFNGGELTKGGTSDQGFKSACREKLEMEELGIRLITVGIGDGQESELGKLATGKSFMSVPSVDELVPCVPELVQMIVKSDSRFDGQLIRTPPVLRRRMKKSRDRAKEKRQQVYKALGVRNDESTKLISKGIPRRASELPPWFTDTDNL 519          
BLAST of Ggra8480.t1 vs. uniprot
Match: R7QCF8 (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCF8_CHOCR)

HSP 1 Score: 493 bits (1270), Expect = 1.330e-160
Identity = 270/474 (56.96%), Postives = 338/474 (71.31%), Query Frame = 0
Query:    3 SRVSFETDDDDGDDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFAGLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDASXXXXXXXXXXXXXXXXXXXSSQERSSSGLGAELAHRG----KRGAVVSEKPRLDLLFVFDASGALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELDRDLDAVRRRILSSFQGDANNWDTNDMYIYEVGDQMWGNALRKVDSLVNDPGKN-------NDIQTISEGDIEEPPTVQATEVPPAMNGMCREAHLALKWSRYEMIPPAANKHIQSQLLNAQRLRRVVLINAGELTKGGTSGQGLKTAFKEKMEMEKLGIRLVTIGIGESQDPELSKLGTGKSSLNASSVAEVVNLVPKLVEMIVRSDYRFDGQVLRSAPVIRKRMKKSREKA-KEKRKH-IYNALRLKNNDADENVRKGISRRASELPPWFT 463
            S  + E ++ D DDDSPW  VW+SASEL E +V  G+  AA VGGQFAGL KPG ARVRPPQVITRLAVPGMC+ALSQL     GSD                     SS E +S       +  G    K G +  + P++DLLFVFDASG+LSWR+YR+MKE+L+ PGG++D++  + H GSR+GFVEYAYDSVVVSELDRD +AVRRRILSSFQGDANNWD + MYIYEVG+++ GNALRKVDSLV     N        D+   SEGDIEEPPTVQA EVPPAMNGM RE HLALKWSR+EM+PP  NKHIQ+Q+  A RLRRVV+INAGE TKGG S  G++ A  EK +MEK GIR++T+G+GES +  L ++ TGKS L A+SV+ V+ L+PKL +MI+++D R DG +  + P I KR ++ REK+ +EKR+H +Y A++    D  +++ KG+ RRASE+PPWFT
Sbjct:  695 SGYTSEREERDLDDDSPWDQVWKSASELPEMVVAAGEAVAAKVGGQFAGLFKPGAARVRPPQVITRLAVPGMCMALSQLP----GSDMMASASANSSELRSFKSSRFPSSHEATSGTKSGSPSENGVGSLKTGCL--DGPKVDLLFVFDASGSLSWREYRQMKEVLTKPGGLLDDLMSKTHSGSRVGFVEYAYDSVVVSELDRDEEAVRRRILSSFQGDANNWDRDGMYIYEVGEEVGGNALRKVDSLVGRSSDNIMEADQGMDVLE-SEGDIEEPPTVQAKEVPPAMNGMSREVHLALKWSRFEMLPPVVNKHIQAQVQKAGRLRRVVVINAGEFTKGGQSPGGVEAAVHEKQKMEKAGIRILTVGVGESCEVNLPRVATGKSHLYATSVSGVIPLLPKLADMILKADPRQDGLLALNPPAILKRRRRKREKSLREKRQHAVYRAMQAGAIDPAKSISKGLPRRASEMPPWFT 1161          
The following BLAST results are available for this feature:
BLAST of Ggra8480.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITE02.020e-21969.78VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7QCF81.330e-16056.96VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 131..398
e-value: 1.9E-10
score: 42.7
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 140..394
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableCDDcd00198vWFAcoord: 140..259
e-value: 3.79331E-5
score: 42.1678
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 141..396
score: 11.098169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:833318..834724 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8480.t1Ggra8480.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 833318..834724 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8480.t1 ID=Ggra8480.t1|Name=Ggra8480.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=469bp
MSSRVSFETDDDDGDDDSPWTHVWRSASELSESIVEMGQEAAAAVGGQFA
GLLKPGGARVRPPQVITRLAVPGMCLALSQLSPDSAGSDASSTSAQSSDS
PSFPSLSASSSSQERSSSGLGAELAHRGKRGAVVSEKPRLDLLFVFDASG
ALSWRDYRRMKEILSTPGGVIDNVQKQVHDGSRMGFVEYAYDSVVVSELD
RDLDAVRRRILSSFQGDANNWDTNDMYIYEVGDQMWGNALRKVDSLVNDP
GKNNDIQTISEGDIEEPPTVQATEVPPAMNGMCREAHLALKWSRYEMIPP
AANKHIQSQLLNAQRLRRVVLINAGELTKGGTSGQGLKTAFKEKMEMEKL
GIRLVTIGIGESQDPELSKLGTGKSSLNASSVAEVVNLVPKLVEMIVRSD
YRFDGQVLRSAPVIRKRMKKSREKAKEKRKHIYNALRLKNNDADENVRKG
ISRRASELPPWFTDSENI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR002035VWF_A