Ggra4490.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4490.t1
Unique NameGgra4490.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:634365..636034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_04046T0
PFAMsAldedh
Max annot lvl4751|Fungi
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00254,RC00816,RC01500,RC01735
KEGG koko:K00128,ko:K00129,ko:K17819
KEGG ReactionR00264,R00631,R00710,R00711,R00904,R01752,R01986,R02536,R02537,R02549,R02678,R02695,R02697,R02940,R02957,R03283,R03300,R03302,R03869,R04065,R04506,R04882,R04883,R04888,R04889,R04891,R04892,R04903,R04996,R05050,R05237,R05238,R05286,R06366,R07104,R08146,R08282,R08283,R08307,R09783
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00350,ko00360,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00906,ko00980,ko00981,ko00982,ko01100,ko01110,ko01120,ko01130,ko05204,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00350,map00360,map00380,map00410,map00561,map00620,map00625,map00903,map00906,map00980,map00981,map00982,map01100,map01110,map01120,map01130,map05204
KEGG ModuleM00135
Evalue1.82e-99
EggNOG OGsCOG1012@1|root,KOG2456@2759|Eukaryota,38CW8@33154|Opisthokonta,3NV38@4751|Fungi
EC1.2.1.3,1.2.1.5,1.2.1.82
DescriptionBelongs to the aldehyde dehydrogenase family
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4490Ggra4490Gracilaria gracilis GNS1m malegenetig00000898_pilon 634365..636034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4490.t1Ggra4490.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 634365..636034 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4490.t1.stop1Ggra4490.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 634365..634367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4490.t1.CDS1Ggra4490.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 634365..635204 -
Ggra4490.t1.CDS2Ggra4490.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000898_pilon 635285..636034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4490.t1.exon1Ggra4490.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 634365..635204 -
Ggra4490.t1.exon2Ggra4490.t1.exon2Gracilaria gracilis GNS1m maleexontig00000898_pilon 635285..636034 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4490.t1.intron1Ggra4490.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000898_pilon 635205..635284 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4490.t1.start1Ggra4490.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 636032..636034 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4490.t1 ID=Ggra4490.t1|Name=Ggra4490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=530bp
MSNTAFEQASAASVHRSLTTSFSSGVTLSTSFRLSLLKRFRALFSDCERQ
FEIALYSDLRKHPYEALTFEFGPLYMDLAYLINNLHGLSEPRRTSLGGGA
SLHLEKHPKGSVLVFGPFNYPIQCLLRPVVAAIAAGNTVCAKPSELTPAT
EAVLVKLASELDPRVFKVITGGADVADELLQLKWDHIVFTGSGINGRAVM
TAAAKHLTPVTLELGGKSPGIVSSSAHIPTAVASIVRGRFANCGQTCLAV
DYCLVHRSVYDEFKRMLLAEVSLTFGDNPKACDAYGRLVNYRHFKRVSSL
LANTNGAILVGGECDEQDQYYVAPTVVELENDEDVLMDDEIFGPILPILR
VQDTQEAIDYVNKRDRPIALYLFSQKDGEKKHVLTHTRSGTAAVNETIIQ
VGPIGSLIGGTGESGMGAYGYSAGFEELSHLRPVMYATPFLARMTGLFLP
PGCFVRLSERQMKVVERLQHVLGRRPFPNSDGTTFHDRLFLRDMRNKIGE
IINRCWTSFLNLLGAQALLFRPAPGNLMQ*
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spliced messenger RNA

>Ggra4490.t1 ID=Ggra4490.t1|Name=Ggra4490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000898_pilon:634365..636034- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAATACAGCATTCGAGCAAGCCTCCGCTGCCTCGGTGCACCGTTC
TTTGACCACGTCTTTCTCTTCCGGCGTAACGCTTTCGACCAGTTTTCGTC
TGTCCCTGCTCAAGAGATTTCGCGCTCTTTTCTCGGACTGCGAACGGCAG
TTTGAAATCGCATTATACAGCGACTTGCGAAAACACCCATACGAAGCTTT
GACATTTGAATTTGGTCCACTTTACATGGATCTTGCATACCTCATTAACA
ATCTACATGGGCTTTCGGAACCACGCCGCACATCACTAGGAGGTGGAGCT
TCTTTACATCTAGAAAAGCATCCAAAAGGTAGTGTACTTGTTTTCGGTCC
GTTCAACTATCCTATTCAGTGTTTACTACGCCCCGTAGTTGCAGCAATAG
CAGCCGGAAACACCGTGTGCGCAAAGCCGTCAGAACTTACACCAGCCACA
GAAGCAGTGCTTGTGAAGCTGGCGAGCGAGCTTGATCCAAGGGTTTTCAA
AGTTATCACCGGGGGTGCTGATGTCGCTGACGAACTTCTTCAGTTAAAAT
GGGACCATATTGTGTTTACTGGCAGTGGTATCAATGGAAGAGCTGTCATG
ACAGCTGCTGCTAAGCATCTCACACCTGTAACTCTTGAACTTGGTGGTAA
GAGTCCTGGTATTGTTTCATCCTCGGCACATATCCCTACTGCCGTTGCTA
GTATTGTTCGTGGTAGGTTTGCGAATTGTGGACAGACTTGCCTTGCAGTC
GATTATTGTCTTGTACACCGAAGCGTTTATGACGAATTCAAGAGAATGCT
ATTGGCAGAAGTCTCTCTCACGTTTGGAGACAACCCCAAGGCATGTGATG
CTTACGGACGGCTTGTTAACTATCGTCATTTCAAGCGAGTTTCCAGCTTA
CTCGCCAACACAAATGGAGCAATACTCGTGGGAGGCGAGTGTGATGAACA
GGACCAATACTACGTGGCCCCAACAGTAGTAGAACTCGAAAACGACGAGG
ATGTCTTGATGGATGACGAGATCTTCGGCCCGATCTTACCTATCTTACGA
GTCCAGGATACCCAAGAAGCGATTGATTATGTGAACAAGCGTGATAGACC
AATTGCTTTGTACCTTTTTAGCCAGAAAGATGGGGAAAAGAAACATGTGT
TAACGCACACCCGCTCTGGTACAGCTGCGGTGAATGAAACTATTATTCAG
GTAGGACCAATTGGATCCTTAATCGGTGGTACTGGAGAGTCAGGAATGGG
TGCGTATGGATATTCTGCCGGCTTCGAAGAATTATCACATCTACGACCAG
TGATGTATGCCACTCCGTTCTTAGCTCGAATGACTGGTTTGTTTCTACCA
CCCGGGTGTTTTGTGCGGCTTAGCGAGCGGCAAATGAAGGTTGTTGAAAG
ACTGCAACATGTTTTGGGTAGACGACCGTTCCCAAATAGCGATGGTACGA
CTTTCCATGACAGGTTGTTTCTACGTGATATGCGAAACAAGATTGGAGAG
ATAATTAACCGATGCTGGACGAGCTTCCTAAACTTGTTAGGAGCGCAGGC
TCTTCTTTTCCGTCCAGCACCTGGTAATTTGATGCAGTAG
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protein sequence of Ggra4490.t1

>Ggra4490.t1 ID=Ggra4490.t1|Name=Ggra4490.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MSNTAFEQASAASVHRSLTTSFSSGVTLSTSFRLSLLKRFRALFSDCERQ
FEIALYSDLRKHPYEALTFEFGPLYMDLAYLINNLHGLSEPRRTSLGGGA
SLHLEKHPKGSVLVFGPFNYPIQCLLRPVVAAIAAGNTVCAKPSELTPAT
EAVLVKLASELDPRVFKVITGGADVADELLQLKWDHIVFTGSGINGRAVM
TAAAKHLTPVTLELGGKSPGIVSSSAHIPTAVASIVRGRFANCGQTCLAV
DYCLVHRSVYDEFKRMLLAEVSLTFGDNPKACDAYGRLVNYRHFKRVSSL
LANTNGAILVGGECDEQDQYYVAPTVVELENDEDVLMDDEIFGPILPILR
VQDTQEAIDYVNKRDRPIALYLFSQKDGEKKHVLTHTRSGTAAVNETIIQ
VGPIGSLIGGTGESGMGAYGYSAGFEELSHLRPVMYATPFLARMTGLFLP
PGCFVRLSERQMKVVERLQHVLGRRPFPNSDGTTFHDRLFLRDMRNKIGE
IINRCWTSFLNLLGAQALLFRPAPGNLMQ*
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mRNA from alignment at tig00000898_pilon:634365..636034-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4490.t1 ID=Ggra4490.t1|Name=Ggra4490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1670bp|location=Sequence derived from alignment at tig00000898_pilon:634365..636034- (Gracilaria gracilis GNS1m male)
ATGTCCAATACAGCATTCGAGCAAGCCTCCGCTGCCTCGGTGCACCGTTC
TTTGACCACGTCTTTCTCTTCCGGCGTAACGCTTTCGACCAGTTTTCGTC
TGTCCCTGCTCAAGAGATTTCGCGCTCTTTTCTCGGACTGCGAACGGCAG
TTTGAAATCGCATTATACAGCGACTTGCGAAAACACCCATACGAAGCTTT
GACATTTGAATTTGGTCCACTTTACATGGATCTTGCATACCTCATTAACA
ATCTACATGGGCTTTCGGAACCACGCCGCACATCACTAGGAGGTGGAGCT
TCTTTACATCTAGAAAAGCATCCAAAAGGTAGTGTACTTGTTTTCGGTCC
GTTCAACTATCCTATTCAGTGTTTACTACGCCCCGTAGTTGCAGCAATAG
CAGCCGGAAACACCGTGTGCGCAAAGCCGTCAGAACTTACACCAGCCACA
GAAGCAGTGCTTGTGAAGCTGGCGAGCGAGCTTGATCCAAGGGTTTTCAA
AGTTATCACCGGGGGTGCTGATGTCGCTGACGAACTTCTTCAGTTAAAAT
GGGACCATATTGTGTTTACTGGCAGTGGTATCAATGGAAGAGCTGTCATG
ACAGCTGCTGCTAAGCATCTCACACCTGTAACTCTTGAACTTGGTGGTAA
GAGTCCTGGTATTGTTTCATCCTCGGCACATATCCCTACTGCCGTTGCTA
GTATTGTTCGTGGTAGGTTTGCGAATTGTGGACAGACTTGCCTTGCAGTC
GTAAGTTATCCATGTATCCACTAGAAAGCCGTTTTTGCTACGCATGACTG
ACGCATCGTTTTGCTTGAGCTTGGCGGCAGGATTATTGTCTTGTACACCG
AAGCGTTTATGACGAATTCAAGAGAATGCTATTGGCAGAAGTCTCTCTCA
CGTTTGGAGACAACCCCAAGGCATGTGATGCTTACGGACGGCTTGTTAAC
TATCGTCATTTCAAGCGAGTTTCCAGCTTACTCGCCAACACAAATGGAGC
AATACTCGTGGGAGGCGAGTGTGATGAACAGGACCAATACTACGTGGCCC
CAACAGTAGTAGAACTCGAAAACGACGAGGATGTCTTGATGGATGACGAG
ATCTTCGGCCCGATCTTACCTATCTTACGAGTCCAGGATACCCAAGAAGC
GATTGATTATGTGAACAAGCGTGATAGACCAATTGCTTTGTACCTTTTTA
GCCAGAAAGATGGGGAAAAGAAACATGTGTTAACGCACACCCGCTCTGGT
ACAGCTGCGGTGAATGAAACTATTATTCAGGTAGGACCAATTGGATCCTT
AATCGGTGGTACTGGAGAGTCAGGAATGGGTGCGTATGGATATTCTGCCG
GCTTCGAAGAATTATCACATCTACGACCAGTGATGTATGCCACTCCGTTC
TTAGCTCGAATGACTGGTTTGTTTCTACCACCCGGGTGTTTTGTGCGGCT
TAGCGAGCGGCAAATGAAGGTTGTTGAAAGACTGCAACATGTTTTGGGTA
GACGACCGTTCCCAAATAGCGATGGTACGACTTTCCATGACAGGTTGTTT
CTACGTGATATGCGAAACAAGATTGGAGAGATAATTAACCGATGCTGGAC
GAGCTTCCTAAACTTGTTAGGAGCGCAGGCTCTTCTTTTCCGTCCAGCAC
CTGGTAATTTGATGCAGTAG
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Coding sequence (CDS) from alignment at tig00000898_pilon:634365..636034-

>Ggra4490.t1 ID=Ggra4490.t1|Name=Ggra4490.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00000898_pilon:634365..636034- (Gracilaria gracilis GNS1m male)
ATGTCCAATACAGCATTCGAGCAAGCCTCCGCTGCCTCGGTGCACCGTTC
TTTGACCACGTCTTTCTCTTCCGGCGTAACGCTTTCGACCAGTTTTCGTC
TGTCCCTGCTCAAGAGATTTCGCGCTCTTTTCTCGGACTGCGAACGGCAG
TTTGAAATCGCATTATACAGCGACTTGCGAAAACACCCATACGAAGCTTT
GACATTTGAATTTGGTCCACTTTACATGGATCTTGCATACCTCATTAACA
ATCTACATGGGCTTTCGGAACCACGCCGCACATCACTAGGAGGTGGAGCT
TCTTTACATCTAGAAAAGCATCCAAAAGGTAGTGTACTTGTTTTCGGTCC
GTTCAACTATCCTATTCAGTGTTTACTACGCCCCGTAGTTGCAGCAATAG
CAGCCGGAAACACCGTGTGCGCAAAGCCGTCAGAACTTACACCAGCCACA
GAAGCAGTGCTTGTGAAGCTGGCGAGCGAGCTTGATCCAAGGGTTTTCAA
AGTTATCACCGGGGGTGCTGATGTCGCTGACGAACTTCTTCAGTTAAAAT
GGGACCATATTGTGTTTACTGGCAGTGGTATCAATGGAAGAGCTGTCATG
ACAGCTGCTGCTAAGCATCTCACACCTGTAACTCTTGAACTTGGTGGTAA
GAGTCCTGGTATTGTTTCATCCTCGGCACATATCCCTACTGCCGTTGCTA
GTATTGTTCGTGGTAGGTTTGCGAATTGTGGACAGACTTGCCTTGCAGTC
GATTATTGTCTTGTACACCGAAGCGTTTATGACGAATTCAAGAGAATGCT
ATTGGCAGAAGTCTCTCTCACGTTTGGAGACAACCCCAAGGCATGTGATG
CTTACGGACGGCTTGTTAACTATCGTCATTTCAAGCGAGTTTCCAGCTTA
CTCGCCAACACAAATGGAGCAATACTCGTGGGAGGCGAGTGTGATGAACA
GGACCAATACTACGTGGCCCCAACAGTAGTAGAACTCGAAAACGACGAGG
ATGTCTTGATGGATGACGAGATCTTCGGCCCGATCTTACCTATCTTACGA
GTCCAGGATACCCAAGAAGCGATTGATTATGTGAACAAGCGTGATAGACC
AATTGCTTTGTACCTTTTTAGCCAGAAAGATGGGGAAAAGAAACATGTGT
TAACGCACACCCGCTCTGGTACAGCTGCGGTGAATGAAACTATTATTCAG
GTAGGACCAATTGGATCCTTAATCGGTGGTACTGGAGAGTCAGGAATGGG
TGCGTATGGATATTCTGCCGGCTTCGAAGAATTATCACATCTACGACCAG
TGATGTATGCCACTCCGTTCTTAGCTCGAATGACTGGTTTGTTTCTACCA
CCCGGGTGTTTTGTGCGGCTTAGCGAGCGGCAAATGAAGGTTGTTGAAAG
ACTGCAACATGTTTTGGGTAGACGACCGTTCCCAAATAGCGATGGTACGA
CTTTCCATGACAGGTTGTTTCTACGTGATATGCGAAACAAGATTGGAGAG
ATAATTAACCGATGCTGGACGAGCTTCCTAAACTTGTTAGGAGCGCAGGC
TCTTCTTTTCCGTCCAGCACCTGGTAATTTGATGCAGTAG
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