Ggra4394.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4394.t1
Unique NameGgra4394.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:168326..168748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705874.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K11111
KEGG ModuleM00424
Evalue2.87e-14
EggNOG OGs2E4ZS@1|root,2SBUF@2759|Eukaryota
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryB
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4394Ggra4394Gracilaria gracilis GNS1m malegenetig00000898_pilon 168326..168748 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4394.t1.start1Ggra4394.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000898_pilon 168326..168328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4394.t1.CDS1Ggra4394.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000898_pilon 168326..168748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4394.t1.exon1Ggra4394.t1.exon1Gracilaria gracilis GNS1m maleexontig00000898_pilon 168326..168748 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4394.t1.stop1Ggra4394.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000898_pilon 168746..168748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4394.t1Ggra4394.t1Gracilaria gracilis GNS1m malepolypeptidetig00000898_pilon 168326..168748 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4394.t1 ID=Ggra4394.t1|Name=Ggra4394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=141bp
MKITGRTVAKATRKKGRRESYTRFSASEEAHLLEGVRKYGAGKWKKILTC
YEFHRKRTAVDLKDKYRNIMRAQEREKRQRLERVGVGKGSSNMSEGLVGG
GGCIPRGTNDDVSVNGREKRIEAPSAMKLTRLLCEPEESY*
back to top

spliced messenger RNA

>Ggra4394.t1 ID=Ggra4394.t1|Name=Ggra4394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000898_pilon:168326..168748+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATTACAGGCAGAACGGTTGCCAAGGCCACTCGCAAGAAGGGCCG
ACGGGAGAGCTACACACGTTTTTCGGCTTCGGAAGAGGCGCATCTGCTGG
AAGGAGTGCGAAAGTATGGAGCCGGAAAATGGAAAAAGATCCTCACATGC
TACGAGTTTCACCGTAAACGCACGGCTGTTGACTTGAAGGACAAGTACCG
AAACATTATGCGGGCTCAGGAAAGAGAGAAGAGACAGAGATTAGAAAGAG
TTGGGGTGGGGAAGGGAAGCAGCAACATGAGTGAGGGGCTAGTTGGTGGT
GGGGGGTGTATTCCAAGGGGCACAAATGACGATGTAAGTGTGAACGGAAG
GGAAAAACGGATAGAGGCACCGTCTGCAATGAAGCTTACGAGACTGCTCT
GCGAACCAGAGGAAAGCTACTAA
back to top

protein sequence of Ggra4394.t1

>Ggra4394.t1 ID=Ggra4394.t1|Name=Ggra4394.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MKITGRTVAKATRKKGRRESYTRFSASEEAHLLEGVRKYGAGKWKKILTC
YEFHRKRTAVDLKDKYRNIMRAQEREKRQRLERVGVGKGSSNMSEGLVGG
GGCIPRGTNDDVSVNGREKRIEAPSAMKLTRLLCEPEESY*
back to top

mRNA from alignment at tig00000898_pilon:168326..168748+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4394.t1 ID=Ggra4394.t1|Name=Ggra4394.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000898_pilon:168326..168748+ (Gracilaria gracilis GNS1m male)
ATGAAGATTACAGGCAGAACGGTTGCCAAGGCCACTCGCAAGAAGGGCCG
ACGGGAGAGCTACACACGTTTTTCGGCTTCGGAAGAGGCGCATCTGCTGG
AAGGAGTGCGAAAGTATGGAGCCGGAAAATGGAAAAAGATCCTCACATGC
TACGAGTTTCACCGTAAACGCACGGCTGTTGACTTGAAGGACAAGTACCG
AAACATTATGCGGGCTCAGGAAAGAGAGAAGAGACAGAGATTAGAAAGAG
TTGGGGTGGGGAAGGGAAGCAGCAACATGAGTGAGGGGCTAGTTGGTGGT
GGGGGGTGTATTCCAAGGGGCACAAATGACGATGTAAGTGTGAACGGAAG
GGAAAAACGGATAGAGGCACCGTCTGCAATGAAGCTTACGAGACTGCTCT
GCGAACCAGAGGAAAGCTACTAA
back to top

Coding sequence (CDS) from alignment at tig00000898_pilon:168326..168748+

>Ggra4394.t1 ID=Ggra4394.t1|Name=Ggra4394.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000898_pilon:168326..168748+ (Gracilaria gracilis GNS1m male)
ATGAAGATTACAGGCAGAACGGTTGCCAAGGCCACTCGCAAGAAGGGCCG
ACGGGAGAGCTACACACGTTTTTCGGCTTCGGAAGAGGCGCATCTGCTGG
AAGGAGTGCGAAAGTATGGAGCCGGAAAATGGAAAAAGATCCTCACATGC
TACGAGTTTCACCGTAAACGCACGGCTGTTGACTTGAAGGACAAGTACCG
AAACATTATGCGGGCTCAGGAAAGAGAGAAGAGACAGAGATTAGAAAGAG
TTGGGGTGGGGAAGGGAAGCAGCAACATGAGTGAGGGGCTAGTTGGTGGT
GGGGGGTGTATTCCAAGGGGCACAAATGACGATGTAAGTGTGAACGGAAG
GGAAAAACGGATAGAGGCACCGTCTGCAATGAAGCTTACGAGACTGCTCT
GCGAACCAGAGGAAAGCTACTAA
back to top