Ggra4387.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4387.t1
Unique NameGgra4387.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length348
Homology
BLAST of Ggra4387.t1 vs. uniprot
Match: R7QBJ4 (GRAM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBJ4_CHOCR)

HSP 1 Score: 241 bits (614), Expect = 4.070e-74
Identity = 127/263 (48.29%), Postives = 176/263 (66.92%), Query Frame = 0
Query:   75 DGAEASSPFGSWRLD----RLHLGSLFAAPDGVEPSSPPPHDAAAPRAVRTPD----LKATAANLAHAASAELQHASEAAQHTFGKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGMFSAKPFGITVALADVAKIQKGAKSMLRLLTVDNASYIFAQFDSDTHFNGAISLLEHM--AGATPAQADSQA 327
            + ++ +  F +W  D      ++G  F  P   E       +   P+A    D    + ATA N+A+AA+AEL+HAS+AA  TFGKAA E+ KGWGTLN+FLDD+LA  P +        + +   +   F   FP +++ ++VVDHF+C L+QKYRC+LNN+TPEK +PLRG +FV+T+HIA+YV D+ G F  KPFG++V  ADV KIQKGAKSMLRL+T   +SYIFA+F+SD+H++GA+SLLEHM  AGA P +A  +A
Sbjct:   51 EASKQTGVFSAWGFDVNAVAGNIGGFFTGPAEDEEEEQVDQEQRDPKASHAADHSDEIGATATNIANAATAELEHASKAAHETFGKAAQEIGKGWGTLNTFLDDILAAKPDSDK------DDEDMDIHASFRELFPDIEKDDEVVDHFKCTLLQKYRCYLNNSTPEKTYPLRGRLFVSTSHIALYVTDDGGAFGGKPFGVSVPFADVGKIQKGAKSMLRLVTKSQSSYIFAEFESDSHYSGALSLLEHMTGAGAAPPKAADRA 307          
BLAST of Ggra4387.t1 vs. uniprot
Match: A0A2V3IUQ4 (AB hydrolase superfamily protein YdjP n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUQ4_9FLOR)

HSP 1 Score: 220 bits (560), Expect = 2.970e-62
Identity = 121/239 (50.63%), Postives = 146/239 (61.09%), Query Frame = 0
Query:   81 SPFGSWRLDRLHLGSLFAAPDGVEPSSPPPHDAAAPRAVRTPDLKATAANLAHAASAELQHASEAAQHTFGKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGMFSAKPFGITVALADVAKIQKGAKSMLRLLTVDNASYIFAQFDSDTHFNGAISLLEHMAGAT 319
            S F +W LDRLH+ SL ++PD      PP                                              ++ KGWGTLN+FLDDMLAP   ++       +  S+ + + FH +FP LD  +QVVDHF CAL+QKYRC+LNNATPEKVF LRGT++VTTTHIAMYV D H  FS  PFGIT+AL DVAK QKGAKSMLRLLT+ ++SYIFAQF SDT F  AI+LLEHMA A+
Sbjct:  438 SAFSTWGLDRLHIASLLSSPDAAV--DPPXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIGKGWGTLNTFLDDMLAPDSSSSNPTSLPDDT-SQHLSQAFHRYFPHLDPHDQVVDHFECALIQKYRCYLNNATPEKVFILRGTLYVTTTHIAMYVTDNHAHFSPDPFGITIALKDVAKFQKGAKSMLRLLTLHHSSYIFAQFQSDTKFTAAITLLEHMAAAS 668          
BLAST of Ggra4387.t1 vs. uniprot
Match: A0A7S3E9T6 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E9T6_9RHOD)

HSP 1 Score: 133 bits (335), Expect = 9.120e-33
Identity = 91/242 (37.60%), Postives = 125/242 (51.65%), Query Frame = 0
Query:   78 EASSPFGSWRLDRLHLGSLFAAPDGVEPSSPPPHDAAAPRAVRTPDLKATAANLAHAASAELQHASEAAQHTFGKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGMFSAKPFGITVALADVAKIQKGAKSMLRLLTVDNASYIFAQFDSDTHFNGAISLLEHMAGAT 319
            EASS   SW      +  LF+   G    S P  D +   A    D++ TA  +A     +L+  S+           EL KGW  L++F+D +L            +   QS RV  QF A FP L + E VVD F C+LVQKYRC+ N+ TPEK +   GT++VT T  A +  D+   F +  F + +    V KIQ+G   MLRLL    AS++F  F+S+TH+ GAIS+LEHM  +T
Sbjct:   36 EASS---SWFAMPEVVTGLFSTA-GASTESYPMVDTSTTTASFGNDVQKTAEIVAK----DLESVSQGVTKNVALVGEELGKGWVGLHNFIDGVL----------NENSLSQSERVRAQFLARFPDLKD-EDVVDSFNCSLVQKYRCYHNSGTPEKHYTFDGTLYVTITSAAFWAEDDEAGFGSANFPVVLKFNAVEKIQRGQPGMLRLLLNSKASFVFNSFESETHYMGAISMLEHMIEST 258          
BLAST of Ggra4387.t1 vs. uniprot
Match: M1VK21 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VK21_CYAM1)

HSP 1 Score: 86.3 bits (212), Expect = 2.890e-15
Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = 0
Query:  208 EQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIA-MYVLDEHGMFSA--------------KPFGITVALADVAKIQKGAKSMLRLLTVDNASYIFAQFDSDTHFNGAISLLE 313
            ++VVD FR ALVQ+YRC  N+ TPE+ + L G +F+T TH+A +  +D   MF                +P  + +AL DV K+Q+G    LRL+T ++ SYIF +F S   F  A+ ++E
Sbjct:  215 QRVVDAFRVALVQRYRCSHNDLTPERRYLLPGRLFITKTHVAFLSSMDAARMFDETSYETDIRPSFIRHEPIRLLLALQDVTKVQRGKGMNLRLVTSEDQSYIFGEFRSTVEFEAALCMIE 335          
BLAST of Ggra4387.t1 vs. uniprot
Match: A0A835XNH0 (GRAM domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XNH0_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 4.030e-10
Identity = 56/178 (31.46%), Postives = 82/178 (46.07%), Query Frame = 0
Query:  142 ASEAAQHTFGKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGM---FSAKPFGITVALADVAKIQKGAKSMLRLLTVDNASYI-FAQFDSDTHFNGAISLLEHM 315
            A+E A  +  K A  L   WG+    LD   AP    TA   A   + S  + + F      L   E +V+HFRC L+Q Y C  N+ TP      +GT++VT  H    V +E G    F      IT A       +KG  S +  L + N +++ F  FDS +  + A++L+EH+
Sbjct:  152 AAETAGASLSKLAGGLTSWWGS----LDPQPAPVRDETAERIAQSNKASGELQQLFG-----LSAEENLVEHFRCKLLQTYACSHNSYTPAIQMAFQGTLYVTDRHTCFSV-EERGRKLPFKVPHTSITRATRQRPS-RKGDLSDILKLELSNGTWLAFKDFDSGSALDSALALVEHL 318          
BLAST of Ggra4387.t1 vs. uniprot
Match: A0A8J4F1W4 (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F1W4_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.780e-9
Identity = 52/179 (29.05%), Postives = 81/179 (45.25%), Query Frame = 0
Query:  140 QHASEAAQHTFGKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGMFSA--KPFGITVALADVAKIQKGAKSMLRLLTVDNASYI-FAQFDSDTHFNGAISLLEHM 315
            + AS  A  +  K A  L   WG     LD    P    TA   A   + S  + + F      L   E +V+HF+C L+Q Y C+ N+ TP      +GT++VT  H   Y ++E G  +    P  + V        +KG  S +  L + N  ++ F  FDS +  + A++L+EH+
Sbjct:  200 EQASTGAGASLTKLAGGLTSWWGA----LDPAPQPQRDETAELVASSNKASGELQQLFG-----LSAEENLVEHFKCKLLQTYSCNHNSHTPAIQLAFQGTLYVTDRHTC-YCVEERGRKAPFKVPHSLVVKATRQRPARKGDLSDVLKLELSNGQWLAFKDFDSGSALDSALALVEHL 368          
BLAST of Ggra4387.t1 vs. uniprot
Match: D8U4Q3 (GRAM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U4Q3_VOLCA)

HSP 1 Score: 68.9 bits (167), Expect = 2.210e-9
Identity = 53/186 (28.49%), Postives = 85/186 (45.70%), Query Frame = 0
Query:  140 QHASEAAQHTFGKAAHELEKGWGTLNSF-------LDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGMFSA--KPFGITVALADVAKIQKGAKSMLRLLTVDNASYI-FAQFDSDTHFNGAISLLEHM 315
            + AS  A  +  K A  L   WG+L+           +++A A  A    RA  E      L+Q       L   E +V+HF+C L+Q Y C+ N+ TP      +GT++VT  H   Y ++E G  +    P  + V        +KG  S +  L + N  ++ F  FDS +  + A++L+EH+
Sbjct:  174 EQASAGAGASLTKLAGGLTSWWGSLDPAPTPARDETAELVASANKARCCGRAGSEASGE--LQQLFG----LSAEENLVEHFKCKLLQTYSCNHNSHTPAIQLAFQGTLYVTDRHTC-YCVEERGRKAPFKVPHSLVVKATRQRPARKGDLSDVLKLDLSNGQWLSFKDFDSGSALDSALALVEHL 352          
BLAST of Ggra4387.t1 vs. uniprot
Match: A0A8J4G9I3 (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G9I3_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 3.180e-9
Identity = 52/179 (29.05%), Postives = 81/179 (45.25%), Query Frame = 0
Query:  140 QHASEAAQHTFGKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGMFSA--KPFGITVALADVAKIQKGAKSMLRLLTVDNASYI-FAQFDSDTHFNGAISLLEHM 315
            + AS  A  +  K A  L   WG+    LD    P    TA   A   + S  + + F      L   E +V+HF+C L+Q Y C+ N  TP      +GT++VT  H   Y ++E G  +    P  + V        +KG  S +  L + N  ++ F  FDS +  + A++L+EH+
Sbjct:  198 EQASSGAGASLTKLAGGLTSWWGS----LDPAPQPQRDETAELVASSNKASGELQQLFG-----LSPEENLVEHFKCKLLQTYSCNHNPHTPAIQLAFQGTLYVTDRHTC-YCVEERGRKAPFKVPHSLVVKATRQRPARKGDLSDVLKLELSNGHWLAFKDFDSGSALDSALALVEHL 366          
BLAST of Ggra4387.t1 vs. uniprot
Match: A0A8J4GHH6 (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GHH6_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 7.760e-9
Identity = 50/179 (27.93%), Postives = 82/179 (45.81%), Query Frame = 0
Query:  140 QHASEAAQHTFGKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGMFSA--KPFGITVALADVAKIQKGAKSMLRLLTVDNASYI-FAQFDSDTHFNGAISLLEHM 315
            + AS  A  +  K A  L   WG+    LD    P    TA   A   + S  + + F      L   E +V+HF+C ++Q Y C+ N+ TP      +GT++VT  H   + ++E G  +    P  + V        +KG  S +  L + N  ++ F  FDS +  + A++L+EH+
Sbjct:  201 EQASSGAGASLTKLAGGLTSWWGS----LDPAPQPQRDETAELVASSNKASGELQQLFG-----LSPEENLVEHFKCKMLQTYSCNHNSHTPAIQLAFQGTLYVTDRHTC-FCVEERGRKAPFKVPHSLVVKATRQRPARKGDLSDVLKLELSNEEWLTFKDFDSGSALDSALALVEHL 369          
BLAST of Ggra4387.t1 vs. uniprot
Match: A0A835WFU7 (GRAM domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WFU7_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.670e-8
Identity = 50/175 (28.57%), Postives = 75/175 (42.86%), Query Frame = 0
Query:  143 SEAAQHTFGKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAHFPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAMYVLDEHGMFSAK-PFGITVALADVAKIQKGAKSMLRLLTVDNASYI-FAQFDSDTHFNGAISLLEHM 315
            S  A  +  K A  L   WG+    LD    P    TA   A   + S  + + F      L   E +V+HF+C L+Q Y C  N+ TP      +GT++VT  H    V +       K P    V        +KG  S L  + + N  ++ F  FDS +  + A++L+EH+
Sbjct:  179 SATAGASLSKLAGGLTSWWGS----LDPAPQPVRDETAERVASSNKASSELQQLFG-----LSAEENLVEHFKCKLLQTYACSHNSHTPAIQMAFQGTLYVTDKHTCFSVEERGRKLPFKVPHSAVVKATRQRPARKGDLSDLLKMELGNGQWLAFKDFDSGSALDSALALVEHL 344          
The following BLAST results are available for this feature:
BLAST of Ggra4387.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
R7QBJ44.070e-7448.29GRAM domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3IUQ42.970e-6250.63AB hydrolase superfamily protein YdjP n=1 Tax=Grac... [more]
A0A7S3E9T69.120e-3337.60Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M1VK212.890e-1538.84Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A835XNH04.030e-1031.46GRAM domain-containing protein n=1 Tax=Edaphochlam... [more]
A0A8J4F1W41.780e-929.05Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
D8U4Q32.210e-928.49GRAM domain-containing protein n=1 Tax=Volvox cart... [more]
A0A8J4G9I33.180e-929.05Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4GHH67.760e-927.93Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A835WFU71.670e-828.57GRAM domain-containing protein n=1 Tax=Chlamydomon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004182GRAM domainSMARTSM00568gram2001ccoord: 195..280
e-value: 1.3E-4
score: 31.3
IPR004182GRAM domainPFAMPF02893GRAMcoord: 196..315
e-value: 5.7E-7
score: 29.4
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 193..315
e-value: 9.3E-8
score: 33.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 320..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..347

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:145225..146268 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4387.t1Ggra4387.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 145225..146268 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4387.t1 ID=Ggra4387.t1|Name=Ggra4387.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=348bp
MSDPPSANARVAPVVAGVDADDDAAPSSPPVAAAPPAAAAQPDAQQPSQP
SQPSQPSQPSQPQPSQPQPGGGAGDGAEASSPFGSWRLDRLHLGSLFAAP
DGVEPSSPPPHDAAAPRAVRTPDLKATAANLAHAASAELQHASEAAQHTF
GKAAHELEKGWGTLNSFLDDMLAPAPPATAAARAHGERQSRRVLEQFHAH
FPQLDEREQVVDHFRCALVQKYRCHLNNATPEKVFPLRGTMFVTTTHIAM
YVLDEHGMFSAKPFGITVALADVAKIQKGAKSMLRLLTVDNASYIFAQFD
SDTHFNGAISLLEHMAGATPAQADSQAERSQSAASSDARADSAAATS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004182GRAM
IPR011993PH-like_dom_sf