Ggra4478.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4478.t1
Unique Name	Ggra4478.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:609428..610840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704083.1
PFAMs	UCH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11842,ko:K11855
Evalue	1.15e-48
EggNOG OGs	KOG1865@1\|root,KOG1865@2759\|Eukaryota
EC	3.4.19.12
Description	ubiquitinyl hydrolase activity
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4478	Ggra4478	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 609428..610840 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4478.t1.start1	Ggra4478.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 609428..609430 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4478.t1.CDS1	Ggra4478.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 609428..610840 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4478.t1.exon1	Ggra4478.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 609428..610840 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4478.t1.stop1	Ggra4478.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 610838..610840 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4478.t1	Ggra4478.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 609428..610840 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:609428..610840+
coding sequence from alignment at tig00000898_pilon:609428..610840+

mRNA sequence

>Ggra4478.t1 ID=Ggra4478.t1|Name=Ggra4478.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MPDSTPPPSTPTPPSTPPPLPHPPGLLNLGNTCYINSVLQVLYNQPQFRT
ALAHWGGPSSSEFSCELAHALQSLFRTLDHTQLLQRETLRNNTLPTADDD
ERDTLDTDPLDDLCENVDYVSPSAFVNLLRDERCDFEAVGQQDAHEFLRF
LLDKVDDALKLHPPVLDCARTDAPQSPPPERTSAQQLGRLRGGEAAKHDN
PDVPSSAVAAPIKAKGTEVPRLAKRRRVSEASDASEPNSPVEDSRPRKRF
RPTLVPDLFEGKAVTATRCDFCESMSNRAEQFLDVSLPVEAGRNLNWAWS
KTGAKEKLVGVNKYSCDTCNTYTEAQRWWRVVTLPKVLTVHLKLFAFDSP
YTSSGEKVAVAMPCPFEMRLSEWCTDDCEQRDMLYRLSAVIVHEGNGASS
GHYYSYIYRDDKAEWYVFDDSLVSVVSKRDLEEKLFTTVRSRRTAYLLFY
TQNPTSEVAASSRSDPNPSS*

spliced messenger RNA

>Ggra4478.t1 ID=Ggra4478.t1|Name=Ggra4478.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000898_pilon:609428..610840+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGACAGTACGCCGCCTCCGTCCACGCCCACTCCGCCTTCCACACC
GCCGCCGTTGCCACATCCTCCCGGCCTACTTAATCTCGGCAACACCTGCT
ACATCAACTCTGTGTTGCAGGTGCTGTACAATCAGCCGCAGTTTCGCACC
GCGCTTGCGCACTGGGGTGGCCCCTCCTCGTCCGAATTTTCTTGCGAGCT
CGCTCATGCGCTACAGTCACTGTTCCGCACGCTCGACCACACGCAATTGC
TACAGAGGGAAACGCTTCGCAACAATACGCTACCCACCGCCGACGACGAC
GAGCGCGATACGCTCGACACTGATCCGCTTGACGATCTCTGCGAGAATGT
TGACTACGTCTCACCCTCCGCCTTCGTCAATCTCCTACGCGACGAGCGAT
GCGACTTCGAGGCCGTCGGCCAGCAGGACGCGCACGAATTCCTCCGCTTC
CTGCTGGACAAGGTCGATGACGCCCTCAAATTACACCCACCAGTCCTCGA
TTGTGCCCGCACTGATGCTCCACAGTCCCCTCCGCCGGAGCGCACTTCCG
CCCAACAACTCGGTAGGCTGCGAGGGGGAGAGGCCGCCAAGCACGACAAC
CCAGACGTACCCAGCAGTGCAGTTGCCGCCCCTATCAAGGCGAAGGGCAC
GGAAGTGCCTCGCTTGGCGAAGAGAAGGCGCGTTTCGGAAGCTTCAGATG
CTTCGGAGCCAAATTCCCCCGTGGAAGACTCCCGGCCGCGGAAGCGCTTT
CGTCCTACGCTGGTACCAGACTTGTTCGAGGGAAAAGCCGTAACCGCCAC
ACGGTGTGACTTTTGCGAATCAATGTCCAACCGCGCCGAACAGTTTTTGG
ATGTATCTCTACCCGTGGAGGCTGGACGCAATCTCAACTGGGCTTGGTCC
AAGACTGGTGCCAAGGAGAAGCTGGTAGGTGTTAATAAGTATAGCTGCGA
CACCTGCAACACCTACACAGAAGCCCAAAGATGGTGGCGTGTAGTGACCC
TTCCAAAGGTCTTGACGGTTCACCTTAAGCTCTTCGCTTTTGATTCTCCG
TACACGAGCTCGGGTGAAAAGGTTGCAGTCGCAATGCCGTGTCCTTTTGA
GATGCGCCTGTCAGAATGGTGTACGGATGATTGCGAGCAGCGAGACATGC
TTTACCGTCTTAGCGCCGTAATTGTACATGAGGGAAATGGTGCGTCTTCG
GGCCATTATTACTCTTACATATACCGAGACGACAAAGCAGAGTGGTATGT
CTTCGACGACTCTCTCGTCTCAGTCGTATCAAAAAGAGATTTGGAAGAGA
AGCTCTTCACAACGGTAAGATCGCGACGAACAGCATACCTGCTGTTTTAC
ACTCAGAACCCGACATCGGAGGTGGCAGCGTCATCTCGGAGTGACCCGAA
TCCATCGAGCTAG

protein sequence of Ggra4478.t1

>Ggra4478.t1 ID=Ggra4478.t1|Name=Ggra4478.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MPDSTPPPSTPTPPSTPPPLPHPPGLLNLGNTCYINSVLQVLYNQPQFRT
ALAHWGGPSSSEFSCELAHALQSLFRTLDHTQLLQRETLRNNTLPTADDD
ERDTLDTDPLDDLCENVDYVSPSAFVNLLRDERCDFEAVGQQDAHEFLRF
LLDKVDDALKLHPPVLDCARTDAPQSPPPERTSAQQLGRLRGGEAAKHDN
PDVPSSAVAAPIKAKGTEVPRLAKRRRVSEASDASEPNSPVEDSRPRKRF
RPTLVPDLFEGKAVTATRCDFCESMSNRAEQFLDVSLPVEAGRNLNWAWS
KTGAKEKLVGVNKYSCDTCNTYTEAQRWWRVVTLPKVLTVHLKLFAFDSP
YTSSGEKVAVAMPCPFEMRLSEWCTDDCEQRDMLYRLSAVIVHEGNGASS
GHYYSYIYRDDKAEWYVFDDSLVSVVSKRDLEEKLFTTVRSRRTAYLLFY
TQNPTSEVAASSRSDPNPSS*

mRNA from alignment at tig00000898_pilon:609428..610840+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4478.t1 ID=Ggra4478.t1|Name=Ggra4478.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000898_pilon:609428..610840+ (Gracilaria gracilis GNS1m male)
ATGCCCGACAGTACGCCGCCTCCGTCCACGCCCACTCCGCCTTCCACACC
GCCGCCGTTGCCACATCCTCCCGGCCTACTTAATCTCGGCAACACCTGCT
ACATCAACTCTGTGTTGCAGGTGCTGTACAATCAGCCGCAGTTTCGCACC
GCGCTTGCGCACTGGGGTGGCCCCTCCTCGTCCGAATTTTCTTGCGAGCT
CGCTCATGCGCTACAGTCACTGTTCCGCACGCTCGACCACACGCAATTGC
TACAGAGGGAAACGCTTCGCAACAATACGCTACCCACCGCCGACGACGAC
GAGCGCGATACGCTCGACACTGATCCGCTTGACGATCTCTGCGAGAATGT
TGACTACGTCTCACCCTCCGCCTTCGTCAATCTCCTACGCGACGAGCGAT
GCGACTTCGAGGCCGTCGGCCAGCAGGACGCGCACGAATTCCTCCGCTTC
CTGCTGGACAAGGTCGATGACGCCCTCAAATTACACCCACCAGTCCTCGA
TTGTGCCCGCACTGATGCTCCACAGTCCCCTCCGCCGGAGCGCACTTCCG
CCCAACAACTCGGTAGGCTGCGAGGGGGAGAGGCCGCCAAGCACGACAAC
CCAGACGTACCCAGCAGTGCAGTTGCCGCCCCTATCAAGGCGAAGGGCAC
GGAAGTGCCTCGCTTGGCGAAGAGAAGGCGCGTTTCGGAAGCTTCAGATG
CTTCGGAGCCAAATTCCCCCGTGGAAGACTCCCGGCCGCGGAAGCGCTTT
CGTCCTACGCTGGTACCAGACTTGTTCGAGGGAAAAGCCGTAACCGCCAC
ACGGTGTGACTTTTGCGAATCAATGTCCAACCGCGCCGAACAGTTTTTGG
ATGTATCTCTACCCGTGGAGGCTGGACGCAATCTCAACTGGGCTTGGTCC
AAGACTGGTGCCAAGGAGAAGCTGGTAGGTGTTAATAAGTATAGCTGCGA
CACCTGCAACACCTACACAGAAGCCCAAAGATGGTGGCGTGTAGTGACCC
TTCCAAAGGTCTTGACGGTTCACCTTAAGCTCTTCGCTTTTGATTCTCCG
TACACGAGCTCGGGTGAAAAGGTTGCAGTCGCAATGCCGTGTCCTTTTGA
GATGCGCCTGTCAGAATGGTGTACGGATGATTGCGAGCAGCGAGACATGC
TTTACCGTCTTAGCGCCGTAATTGTACATGAGGGAAATGGTGCGTCTTCG
GGCCATTATTACTCTTACATATACCGAGACGACAAAGCAGAGTGGTATGT
CTTCGACGACTCTCTCGTCTCAGTCGTATCAAAAAGAGATTTGGAAGAGA
AGCTCTTCACAACGGTAAGATCGCGACGAACAGCATACCTGCTGTTTTAC
ACTCAGAACCCGACATCGGAGGTGGCAGCGTCATCTCGGAGTGACCCGAA
TCCATCGAGCTAG

Coding sequence (CDS) from alignment at tig00000898_pilon:609428..610840+

>Ggra4478.t1 ID=Ggra4478.t1|Name=Ggra4478.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000898_pilon:609428..610840+ (Gracilaria gracilis GNS1m male)
ATGCCCGACAGTACGCCGCCTCCGTCCACGCCCACTCCGCCTTCCACACC
GCCGCCGTTGCCACATCCTCCCGGCCTACTTAATCTCGGCAACACCTGCT
ACATCAACTCTGTGTTGCAGGTGCTGTACAATCAGCCGCAGTTTCGCACC
GCGCTTGCGCACTGGGGTGGCCCCTCCTCGTCCGAATTTTCTTGCGAGCT
CGCTCATGCGCTACAGTCACTGTTCCGCACGCTCGACCACACGCAATTGC
TACAGAGGGAAACGCTTCGCAACAATACGCTACCCACCGCCGACGACGAC
GAGCGCGATACGCTCGACACTGATCCGCTTGACGATCTCTGCGAGAATGT
TGACTACGTCTCACCCTCCGCCTTCGTCAATCTCCTACGCGACGAGCGAT
GCGACTTCGAGGCCGTCGGCCAGCAGGACGCGCACGAATTCCTCCGCTTC
CTGCTGGACAAGGTCGATGACGCCCTCAAATTACACCCACCAGTCCTCGA
TTGTGCCCGCACTGATGCTCCACAGTCCCCTCCGCCGGAGCGCACTTCCG
CCCAACAACTCGGTAGGCTGCGAGGGGGAGAGGCCGCCAAGCACGACAAC
CCAGACGTACCCAGCAGTGCAGTTGCCGCCCCTATCAAGGCGAAGGGCAC
GGAAGTGCCTCGCTTGGCGAAGAGAAGGCGCGTTTCGGAAGCTTCAGATG
CTTCGGAGCCAAATTCCCCCGTGGAAGACTCCCGGCCGCGGAAGCGCTTT
CGTCCTACGCTGGTACCAGACTTGTTCGAGGGAAAAGCCGTAACCGCCAC
ACGGTGTGACTTTTGCGAATCAATGTCCAACCGCGCCGAACAGTTTTTGG
ATGTATCTCTACCCGTGGAGGCTGGACGCAATCTCAACTGGGCTTGGTCC
AAGACTGGTGCCAAGGAGAAGCTGGTAGGTGTTAATAAGTATAGCTGCGA
CACCTGCAACACCTACACAGAAGCCCAAAGATGGTGGCGTGTAGTGACCC
TTCCAAAGGTCTTGACGGTTCACCTTAAGCTCTTCGCTTTTGATTCTCCG
TACACGAGCTCGGGTGAAAAGGTTGCAGTCGCAATGCCGTGTCCTTTTGA
GATGCGCCTGTCAGAATGGTGTACGGATGATTGCGAGCAGCGAGACATGC
TTTACCGTCTTAGCGCCGTAATTGTACATGAGGGAAATGGTGCGTCTTCG
GGCCATTATTACTCTTACATATACCGAGACGACAAAGCAGAGTGGTATGT
CTTCGACGACTCTCTCGTCTCAGTCGTATCAAAAAGAGATTTGGAAGAGA
AGCTCTTCACAACGGTAAGATCGCGACGAACAGCATACCTGCTGTTTTAC
ACTCAGAACCCGACATCGGAGGTGGCAGCGTCATCTCGGAGTGACCCGAA
TCCATCGAGCTAG