Ggra5761.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5761.t1
Unique NameGgra5761.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000897_piloncontigtig00000897_pilon:852086..852397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707022.1
Preferred namePSMA1
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K02725,ko:K13141
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000003,GO:0000502,GO:0001530,GO:0001673,GO:0001703,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005839,GO:0005844,GO:0005856,GO:0005886,GO:0005911,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0006997,GO:0007088,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007346,GO:0007349,GO:0007369,GO:0007370,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009506,GO:0009653,GO:0009790,GO:0009896,GO:0009987,GO:0010004,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030054,GO:0030071,GO:0030154,GO:0030163,GO:0031331,GO:0031347,GO:0031348,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046685,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055044,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0080134,GO:0090068,GO:0097159,GO:0097367,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
Evalue8.88e-14
EggNOG OGsCOG0638@1|root,KOG0863@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko03051,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5761Ggra5761Gracilaria gracilis GNS1m malegenetig00000897_pilon 852086..852397 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5761.t1.stop1Ggra5761.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000897_pilon 852086..852088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5761.t1.CDS1Ggra5761.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000897_pilon 852086..852397 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5761.t1.exon1Ggra5761.t1.exon1Gracilaria gracilis GNS1m maleexontig00000897_pilon 852086..852397 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5761.t1.start1Ggra5761.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000897_pilon 852395..852397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5761.t1Ggra5761.t1Gracilaria gracilis GNS1m malepolypeptidetig00000897_pilon 852086..852397 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5761.t1 ID=Ggra5761.t1|Name=Ggra5761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MAIGSRSPREKMYFERTFEVFPNRTLGELTKHAVHALRDTVLSYMNTELT
LEFAAVAIGAEVTDFTIYEENDLTPYLDIINEEEKEQPSEPQVLAAHASI
TEA*
back to top

spliced messenger RNA

>Ggra5761.t1 ID=Ggra5761.t1|Name=Ggra5761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000897_pilon:852086..852397- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATTGGATCCAGAAGCCCAAGAGAAAAGATGTACTTTGAGCGAAC
TTTTGAAGTATTCCCCAATCGTACTCTGGGCGAGCTAACGAAGCATGCGG
TGCACGCTCTCCGTGACACTGTTCTTTCTTATATGAATACAGAGCTCACT
TTGGAATTCGCAGCAGTTGCAATTGGTGCAGAAGTAACTGATTTCACAAT
TTATGAAGAAAATGATCTAACGCCATACCTTGATATTATTAACGAAGAGG
AGAAAGAACAGCCATCGGAACCGCAAGTCCTCGCCGCACATGCGTCTATC
ACAGAAGCATAG
back to top

protein sequence of Ggra5761.t1

>Ggra5761.t1 ID=Ggra5761.t1|Name=Ggra5761.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MAIGSRSPREKMYFERTFEVFPNRTLGELTKHAVHALRDTVLSYMNTELT
LEFAAVAIGAEVTDFTIYEENDLTPYLDIINEEEKEQPSEPQVLAAHASI
TEA*
back to top

mRNA from alignment at tig00000897_pilon:852086..852397-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5761.t1 ID=Ggra5761.t1|Name=Ggra5761.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000897_pilon:852086..852397- (Gracilaria gracilis GNS1m male)
ATGGCTATTGGATCCAGAAGCCCAAGAGAAAAGATGTACTTTGAGCGAAC
TTTTGAAGTATTCCCCAATCGTACTCTGGGCGAGCTAACGAAGCATGCGG
TGCACGCTCTCCGTGACACTGTTCTTTCTTATATGAATACAGAGCTCACT
TTGGAATTCGCAGCAGTTGCAATTGGTGCAGAAGTAACTGATTTCACAAT
TTATGAAGAAAATGATCTAACGCCATACCTTGATATTATTAACGAAGAGG
AGAAAGAACAGCCATCGGAACCGCAAGTCCTCGCCGCACATGCGTCTATC
ACAGAAGCATAG
back to top

Coding sequence (CDS) from alignment at tig00000897_pilon:852086..852397-

>Ggra5761.t1 ID=Ggra5761.t1|Name=Ggra5761.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000897_pilon:852086..852397- (Gracilaria gracilis GNS1m male)
ATGGCTATTGGATCCAGAAGCCCAAGAGAAAAGATGTACTTTGAGCGAAC
TTTTGAAGTATTCCCCAATCGTACTCTGGGCGAGCTAACGAAGCATGCGG
TGCACGCTCTCCGTGACACTGTTCTTTCTTATATGAATACAGAGCTCACT
TTGGAATTCGCAGCAGTTGCAATTGGTGCAGAAGTAACTGATTTCACAAT
TTATGAAGAAAATGATCTAACGCCATACCTTGATATTATTAACGAAGAGG
AGAAAGAACAGCCATCGGAACCGCAAGTCCTCGCCGCACATGCGTCTATC
ACAGAAGCATAG
back to top