Ggra630.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra630.t1
Unique NameGgra630.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length458
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000895_piloncontigtig00000895_pilon:212762..214135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra630Ggra630Gracilaria gracilis GNS1m malegenetig00000895_pilon 212762..214135 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra630.t1.stop1Ggra630.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000895_pilon 212762..212764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra630.t1.CDS1Ggra630.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000895_pilon 212762..214135 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra630.t1.exon1Ggra630.t1.exon1Gracilaria gracilis GNS1m maleexontig00000895_pilon 212762..214135 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra630.t1.start1Ggra630.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000895_pilon 214133..214135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra630.t1Ggra630.t1Gracilaria gracilis GNS1m malepolypeptidetig00000895_pilon 212762..214135 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra630.t1 ID=Ggra630.t1|Name=Ggra630.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=458bp
MEKPSDSTFSDLLNLLSNEMESDSGRLFDSFSDSQPSALYEPFGSIDGVF
AGSCQSVPMVSFPSIESNPNTDVPMKIPTPISQKTPPLPPKFPQTSVRAN
EILPFLLRTSPKILANSHNPSKVTQSASFQFSQAPEQEGNFLRAPASQLL
QSCSSIRTPRPLDLLQQVTTHKPLHNLQPLNSSQYLEAKKYPSSFPSDCF
QPVPDFQTSAAQTRPDPLKPVQIRQSRGGHPNFSLSLQAPANFLGNELER
NVWSLQGTERIPTAKELFGRSLVPLFTPHSGTLNTAIEAAAIPNELSPSN
GKSNPTTNFCSIRKSTWGAECNLSEAKPVTKALDARKSYNVSKKNSMVKK
TIKAVARNPQEVEHILLGCKRKLAEIGKPKKSKAKKRRSEIELDNDIDEI
RRNASVAVDGFNTLKLENEELIKNLAERDQKIKVMLQEQEELNRKEIVAQ
DTSPGDS*
back to top

spliced messenger RNA

>Ggra630.t1 ID=Ggra630.t1|Name=Ggra630.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00000895_pilon:212762..214135- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGCCGTCCGACTCCACATTTTCAGACCTACTTAACCTTTTAAG
TAATGAAATGGAAAGTGACAGCGGTCGTCTTTTCGATTCTTTCTCTGACT
CTCAACCGAGCGCTTTATATGAACCTTTTGGAAGCATTGACGGTGTTTTT
GCAGGTAGCTGCCAATCAGTACCCATGGTATCATTTCCATCAATTGAATC
AAATCCAAATACTGATGTACCGATGAAAATACCGACACCAATTTCACAGA
AGACCCCGCCATTGCCGCCAAAATTTCCACAAACATCAGTACGGGCAAAT
GAAATACTTCCATTCTTACTCCGCACCTCTCCCAAAATCCTGGCTAACTC
TCACAATCCTTCGAAAGTGACACAATCAGCCTCATTTCAATTTTCACAAG
CTCCAGAACAGGAGGGAAACTTCCTTCGAGCTCCAGCTTCTCAATTGTTA
CAATCATGTTCTTCAATTCGCACTCCGAGACCACTGGACCTCTTGCAGCA
GGTTACGACACACAAACCACTGCATAATTTGCAGCCACTGAATTCATCCC
AATACCTCGAAGCAAAGAAATATCCCTCATCGTTCCCTTCCGATTGCTTT
CAGCCTGTTCCGGATTTCCAAACCTCCGCCGCTCAAACCAGACCAGATCC
ATTGAAACCTGTTCAGATCCGTCAGAGTAGAGGTGGGCATCCAAACTTTA
GTCTTTCGTTACAAGCACCTGCAAACTTTCTTGGAAACGAGTTGGAGAGG
AATGTATGGTCTCTACAAGGTACTGAACGAATTCCTACTGCCAAAGAACT
CTTCGGAAGATCTCTAGTACCGCTATTTACACCGCATAGTGGAACCCTAA
ACACCGCAATTGAGGCAGCAGCAATTCCGAATGAGCTTTCGCCATCAAAC
GGCAAATCCAATCCAACAACCAATTTCTGTTCTATACGAAAATCTACATG
GGGTGCTGAATGTAATCTGTCAGAAGCCAAACCTGTCACCAAAGCTCTTG
ACGCACGAAAATCATACAATGTGTCAAAAAAAAATTCTATGGTGAAGAAA
ACCATTAAAGCAGTCGCGAGAAATCCACAAGAGGTCGAACATATTCTGTT
GGGATGCAAAAGAAAGCTGGCAGAGATTGGAAAACCAAAGAAGTCAAAAG
CAAAGAAGCGTCGGAGTGAGATTGAGCTTGATAATGATATAGATGAAATC
AGGAGAAATGCTTCTGTTGCGGTAGATGGTTTTAATACTCTAAAACTGGA
GAATGAAGAACTCATTAAAAACCTTGCTGAGAGAGATCAAAAGATTAAAG
TGATGTTGCAAGAGCAAGAAGAACTCAACAGGAAAGAAATTGTTGCGCAA
GATACTTCTCCTGGAGATTCATAG
back to top

protein sequence of Ggra630.t1

>Ggra630.t1 ID=Ggra630.t1|Name=Ggra630.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=458bp
MEKPSDSTFSDLLNLLSNEMESDSGRLFDSFSDSQPSALYEPFGSIDGVF
AGSCQSVPMVSFPSIESNPNTDVPMKIPTPISQKTPPLPPKFPQTSVRAN
EILPFLLRTSPKILANSHNPSKVTQSASFQFSQAPEQEGNFLRAPASQLL
QSCSSIRTPRPLDLLQQVTTHKPLHNLQPLNSSQYLEAKKYPSSFPSDCF
QPVPDFQTSAAQTRPDPLKPVQIRQSRGGHPNFSLSLQAPANFLGNELER
NVWSLQGTERIPTAKELFGRSLVPLFTPHSGTLNTAIEAAAIPNELSPSN
GKSNPTTNFCSIRKSTWGAECNLSEAKPVTKALDARKSYNVSKKNSMVKK
TIKAVARNPQEVEHILLGCKRKLAEIGKPKKSKAKKRRSEIELDNDIDEI
RRNASVAVDGFNTLKLENEELIKNLAERDQKIKVMLQEQEELNRKEIVAQ
DTSPGDS*
back to top

mRNA from alignment at tig00000895_pilon:212762..214135-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra630.t1 ID=Ggra630.t1|Name=Ggra630.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00000895_pilon:212762..214135- (Gracilaria gracilis GNS1m male)
ATGGAGAAGCCGTCCGACTCCACATTTTCAGACCTACTTAACCTTTTAAG
TAATGAAATGGAAAGTGACAGCGGTCGTCTTTTCGATTCTTTCTCTGACT
CTCAACCGAGCGCTTTATATGAACCTTTTGGAAGCATTGACGGTGTTTTT
GCAGGTAGCTGCCAATCAGTACCCATGGTATCATTTCCATCAATTGAATC
AAATCCAAATACTGATGTACCGATGAAAATACCGACACCAATTTCACAGA
AGACCCCGCCATTGCCGCCAAAATTTCCACAAACATCAGTACGGGCAAAT
GAAATACTTCCATTCTTACTCCGCACCTCTCCCAAAATCCTGGCTAACTC
TCACAATCCTTCGAAAGTGACACAATCAGCCTCATTTCAATTTTCACAAG
CTCCAGAACAGGAGGGAAACTTCCTTCGAGCTCCAGCTTCTCAATTGTTA
CAATCATGTTCTTCAATTCGCACTCCGAGACCACTGGACCTCTTGCAGCA
GGTTACGACACACAAACCACTGCATAATTTGCAGCCACTGAATTCATCCC
AATACCTCGAAGCAAAGAAATATCCCTCATCGTTCCCTTCCGATTGCTTT
CAGCCTGTTCCGGATTTCCAAACCTCCGCCGCTCAAACCAGACCAGATCC
ATTGAAACCTGTTCAGATCCGTCAGAGTAGAGGTGGGCATCCAAACTTTA
GTCTTTCGTTACAAGCACCTGCAAACTTTCTTGGAAACGAGTTGGAGAGG
AATGTATGGTCTCTACAAGGTACTGAACGAATTCCTACTGCCAAAGAACT
CTTCGGAAGATCTCTAGTACCGCTATTTACACCGCATAGTGGAACCCTAA
ACACCGCAATTGAGGCAGCAGCAATTCCGAATGAGCTTTCGCCATCAAAC
GGCAAATCCAATCCAACAACCAATTTCTGTTCTATACGAAAATCTACATG
GGGTGCTGAATGTAATCTGTCAGAAGCCAAACCTGTCACCAAAGCTCTTG
ACGCACGAAAATCATACAATGTGTCAAAAAAAAATTCTATGGTGAAGAAA
ACCATTAAAGCAGTCGCGAGAAATCCACAAGAGGTCGAACATATTCTGTT
GGGATGCAAAAGAAAGCTGGCAGAGATTGGAAAACCAAAGAAGTCAAAAG
CAAAGAAGCGTCGGAGTGAGATTGAGCTTGATAATGATATAGATGAAATC
AGGAGAAATGCTTCTGTTGCGGTAGATGGTTTTAATACTCTAAAACTGGA
GAATGAAGAACTCATTAAAAACCTTGCTGAGAGAGATCAAAAGATTAAAG
TGATGTTGCAAGAGCAAGAAGAACTCAACAGGAAAGAAATTGTTGCGCAA
GATACTTCTCCTGGAGATTCATAG
back to top

Coding sequence (CDS) from alignment at tig00000895_pilon:212762..214135-

>Ggra630.t1 ID=Ggra630.t1|Name=Ggra630.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1374bp|location=Sequence derived from alignment at tig00000895_pilon:212762..214135- (Gracilaria gracilis GNS1m male)
ATGGAGAAGCCGTCCGACTCCACATTTTCAGACCTACTTAACCTTTTAAG
TAATGAAATGGAAAGTGACAGCGGTCGTCTTTTCGATTCTTTCTCTGACT
CTCAACCGAGCGCTTTATATGAACCTTTTGGAAGCATTGACGGTGTTTTT
GCAGGTAGCTGCCAATCAGTACCCATGGTATCATTTCCATCAATTGAATC
AAATCCAAATACTGATGTACCGATGAAAATACCGACACCAATTTCACAGA
AGACCCCGCCATTGCCGCCAAAATTTCCACAAACATCAGTACGGGCAAAT
GAAATACTTCCATTCTTACTCCGCACCTCTCCCAAAATCCTGGCTAACTC
TCACAATCCTTCGAAAGTGACACAATCAGCCTCATTTCAATTTTCACAAG
CTCCAGAACAGGAGGGAAACTTCCTTCGAGCTCCAGCTTCTCAATTGTTA
CAATCATGTTCTTCAATTCGCACTCCGAGACCACTGGACCTCTTGCAGCA
GGTTACGACACACAAACCACTGCATAATTTGCAGCCACTGAATTCATCCC
AATACCTCGAAGCAAAGAAATATCCCTCATCGTTCCCTTCCGATTGCTTT
CAGCCTGTTCCGGATTTCCAAACCTCCGCCGCTCAAACCAGACCAGATCC
ATTGAAACCTGTTCAGATCCGTCAGAGTAGAGGTGGGCATCCAAACTTTA
GTCTTTCGTTACAAGCACCTGCAAACTTTCTTGGAAACGAGTTGGAGAGG
AATGTATGGTCTCTACAAGGTACTGAACGAATTCCTACTGCCAAAGAACT
CTTCGGAAGATCTCTAGTACCGCTATTTACACCGCATAGTGGAACCCTAA
ACACCGCAATTGAGGCAGCAGCAATTCCGAATGAGCTTTCGCCATCAAAC
GGCAAATCCAATCCAACAACCAATTTCTGTTCTATACGAAAATCTACATG
GGGTGCTGAATGTAATCTGTCAGAAGCCAAACCTGTCACCAAAGCTCTTG
ACGCACGAAAATCATACAATGTGTCAAAAAAAAATTCTATGGTGAAGAAA
ACCATTAAAGCAGTCGCGAGAAATCCACAAGAGGTCGAACATATTCTGTT
GGGATGCAAAAGAAAGCTGGCAGAGATTGGAAAACCAAAGAAGTCAAAAG
CAAAGAAGCGTCGGAGTGAGATTGAGCTTGATAATGATATAGATGAAATC
AGGAGAAATGCTTCTGTTGCGGTAGATGGTTTTAATACTCTAAAACTGGA
GAATGAAGAACTCATTAAAAACCTTGCTGAGAGAGATCAAAAGATTAAAG
TGATGTTGCAAGAGCAAGAAGAACTCAACAGGAAAGAAATTGTTGCGCAA
GATACTTCTCCTGGAGATTCATAG
back to top