Ggra11030.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11030.t2
Unique NameGgra11030.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:74986..76275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391612.CY0110_09812
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue1.32e-12
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11030Ggra11030Gracilaria gracilis GNS1m malegenetig00000894_pilon 74986..76275 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11030.t2.stop1Ggra11030.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 74986..74988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11030.t2.CDS1Ggra11030.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 74986..76275 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11030.t2.exon1Ggra11030.t2.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 74986..76275 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11030.t2.start1Ggra11030.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 76273..76275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11030.t2Ggra11030.t2Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 74986..76275 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11030.t2 ID=Ggra11030.t2|Name=Ggra11030.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MCECFRDRFEEMCGTKYEVLFLHATINNYYFAKDRPIHAIFQCVSPIDGK
TSKVVSPVSKEYKWMEIKEVDFLVEDSLSPWVYEEQEFSAHYTLTRPEHM
KCAEDGYRPWELPMWHINTALEAKDALARLGYVVKGKFEQWQITHNSAVL
RVATSKGHVYLKASNRREGKVTDLIAEFAPELVRKPILVNEEKGWMLMND
YGTVVNRSNKAEYERFCIPIGQLHLESIRHLETLKEAGVSFQSAQSFIQR
TEKMLKDKGIGEIMGKCDAFQSCTHEGVADLQEYCEAVCELLRDLYENGK
CPLSLVHGDLPDNMIKGYDDSCILFDWGAARIDFPLCDLLAMESNVSSDV
FEEYLSLWEAYASPSELRSLFGIIFIKVRLIWVLREYEEEIKLQPINRLE
DITVDMLGNLLVDAKEEIGTRKLQVKNRD*
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spliced messenger RNA

>Ggra11030.t2 ID=Ggra11030.t2|Name=Ggra11030.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000894_pilon:74986..76275- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAATGCTTCCGTGACCGGTTTGAAGAGATGTGTGGAACAAAATA
TGAAGTGCTTTTCCTTCATGCGACAATAAATAACTACTACTTTGCGAAAG
ACAGGCCCATACATGCAATTTTCCAGTGTGTATCTCCGATAGACGGCAAG
ACGAGCAAGGTAGTGTCACCGGTGTCTAAAGAGTATAAATGGATGGAGAT
TAAAGAAGTTGATTTCCTCGTGGAAGATTCTCTTTCTCCTTGGGTATACG
AAGAACAGGAATTCAGTGCTCATTATACGTTAACGAGACCAGAACATATG
AAATGTGCAGAGGACGGGTATCGACCTTGGGAGCTACCGATGTGGCATAT
AAATACAGCTCTTGAAGCAAAAGACGCACTCGCAAGGCTAGGATATGTTG
TGAAAGGCAAGTTTGAGCAGTGGCAAATCACCCACAACTCTGCTGTGTTA
CGTGTGGCAACAAGCAAGGGCCATGTGTATTTGAAGGCTAGCAACCGAAG
AGAAGGTAAAGTAACGGATCTCATAGCGGAGTTTGCGCCTGAACTCGTTC
GAAAGCCTATATTGGTGAACGAAGAAAAGGGTTGGATGTTGATGAATGAC
TACGGAACGGTTGTAAATCGCAGTAACAAGGCGGAATACGAAAGGTTTTG
TATTCCAATCGGACAGCTTCATCTTGAATCAATCCGTCACCTCGAAACTC
TGAAGGAGGCTGGCGTTTCATTTCAGTCTGCTCAATCTTTTATACAGCGG
ACGGAGAAAATGCTGAAGGATAAGGGAATCGGCGAAATTATGGGTAAATG
TGATGCGTTTCAAAGTTGTACCCATGAAGGTGTGGCGGATCTACAAGAAT
ACTGCGAGGCTGTGTGCGAGCTTTTGCGAGACCTTTACGAAAACGGAAAG
TGTCCTTTGAGTCTGGTACATGGGGACTTGCCCGACAATATGATCAAGGG
ATATGACGATTCATGCATTCTTTTCGACTGGGGAGCTGCCCGAATTGATT
TTCCGTTATGCGACCTACTGGCAATGGAAAGTAATGTAAGTTCGGATGTC
TTTGAAGAATATCTGAGCTTGTGGGAAGCGTATGCCTCACCATCTGAACT
ACGGTCCTTGTTTGGAATAATATTTATCAAAGTTAGACTTATCTGGGTTT
TGAGGGAATATGAGGAAGAAATAAAGCTTCAGCCGATCAACAGGCTAGAA
GATATTACAGTAGATATGCTTGGAAATTTGTTGGTCGACGCCAAAGAAGA
AATAGGAACGAGGAAGTTACAAGTTAAGAACAGAGACTGA
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protein sequence of Ggra11030.t2

>Ggra11030.t2 ID=Ggra11030.t2|Name=Ggra11030.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MCECFRDRFEEMCGTKYEVLFLHATINNYYFAKDRPIHAIFQCVSPIDGK
TSKVVSPVSKEYKWMEIKEVDFLVEDSLSPWVYEEQEFSAHYTLTRPEHM
KCAEDGYRPWELPMWHINTALEAKDALARLGYVVKGKFEQWQITHNSAVL
RVATSKGHVYLKASNRREGKVTDLIAEFAPELVRKPILVNEEKGWMLMND
YGTVVNRSNKAEYERFCIPIGQLHLESIRHLETLKEAGVSFQSAQSFIQR
TEKMLKDKGIGEIMGKCDAFQSCTHEGVADLQEYCEAVCELLRDLYENGK
CPLSLVHGDLPDNMIKGYDDSCILFDWGAARIDFPLCDLLAMESNVSSDV
FEEYLSLWEAYASPSELRSLFGIIFIKVRLIWVLREYEEEIKLQPINRLE
DITVDMLGNLLVDAKEEIGTRKLQVKNRD*
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mRNA from alignment at tig00000894_pilon:74986..76275-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11030.t2 ID=Ggra11030.t2|Name=Ggra11030.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000894_pilon:74986..76275- (Gracilaria gracilis GNS1m male)
ATGTGCGAATGCTTCCGTGACCGGTTTGAAGAGATGTGTGGAACAAAATA
TGAAGTGCTTTTCCTTCATGCGACAATAAATAACTACTACTTTGCGAAAG
ACAGGCCCATACATGCAATTTTCCAGTGTGTATCTCCGATAGACGGCAAG
ACGAGCAAGGTAGTGTCACCGGTGTCTAAAGAGTATAAATGGATGGAGAT
TAAAGAAGTTGATTTCCTCGTGGAAGATTCTCTTTCTCCTTGGGTATACG
AAGAACAGGAATTCAGTGCTCATTATACGTTAACGAGACCAGAACATATG
AAATGTGCAGAGGACGGGTATCGACCTTGGGAGCTACCGATGTGGCATAT
AAATACAGCTCTTGAAGCAAAAGACGCACTCGCAAGGCTAGGATATGTTG
TGAAAGGCAAGTTTGAGCAGTGGCAAATCACCCACAACTCTGCTGTGTTA
CGTGTGGCAACAAGCAAGGGCCATGTGTATTTGAAGGCTAGCAACCGAAG
AGAAGGTAAAGTAACGGATCTCATAGCGGAGTTTGCGCCTGAACTCGTTC
GAAAGCCTATATTGGTGAACGAAGAAAAGGGTTGGATGTTGATGAATGAC
TACGGAACGGTTGTAAATCGCAGTAACAAGGCGGAATACGAAAGGTTTTG
TATTCCAATCGGACAGCTTCATCTTGAATCAATCCGTCACCTCGAAACTC
TGAAGGAGGCTGGCGTTTCATTTCAGTCTGCTCAATCTTTTATACAGCGG
ACGGAGAAAATGCTGAAGGATAAGGGAATCGGCGAAATTATGGGTAAATG
TGATGCGTTTCAAAGTTGTACCCATGAAGGTGTGGCGGATCTACAAGAAT
ACTGCGAGGCTGTGTGCGAGCTTTTGCGAGACCTTTACGAAAACGGAAAG
TGTCCTTTGAGTCTGGTACATGGGGACTTGCCCGACAATATGATCAAGGG
ATATGACGATTCATGCATTCTTTTCGACTGGGGAGCTGCCCGAATTGATT
TTCCGTTATGCGACCTACTGGCAATGGAAAGTAATGTAAGTTCGGATGTC
TTTGAAGAATATCTGAGCTTGTGGGAAGCGTATGCCTCACCATCTGAACT
ACGGTCCTTGTTTGGAATAATATTTATCAAAGTTAGACTTATCTGGGTTT
TGAGGGAATATGAGGAAGAAATAAAGCTTCAGCCGATCAACAGGCTAGAA
GATATTACAGTAGATATGCTTGGAAATTTGTTGGTCGACGCCAAAGAAGA
AATAGGAACGAGGAAGTTACAAGTTAAGAACAGAGACTGA
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Coding sequence (CDS) from alignment at tig00000894_pilon:74986..76275-

>Ggra11030.t2 ID=Ggra11030.t2|Name=Ggra11030.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000894_pilon:74986..76275- (Gracilaria gracilis GNS1m male)
ATGTGCGAATGCTTCCGTGACCGGTTTGAAGAGATGTGTGGAACAAAATA
TGAAGTGCTTTTCCTTCATGCGACAATAAATAACTACTACTTTGCGAAAG
ACAGGCCCATACATGCAATTTTCCAGTGTGTATCTCCGATAGACGGCAAG
ACGAGCAAGGTAGTGTCACCGGTGTCTAAAGAGTATAAATGGATGGAGAT
TAAAGAAGTTGATTTCCTCGTGGAAGATTCTCTTTCTCCTTGGGTATACG
AAGAACAGGAATTCAGTGCTCATTATACGTTAACGAGACCAGAACATATG
AAATGTGCAGAGGACGGGTATCGACCTTGGGAGCTACCGATGTGGCATAT
AAATACAGCTCTTGAAGCAAAAGACGCACTCGCAAGGCTAGGATATGTTG
TGAAAGGCAAGTTTGAGCAGTGGCAAATCACCCACAACTCTGCTGTGTTA
CGTGTGGCAACAAGCAAGGGCCATGTGTATTTGAAGGCTAGCAACCGAAG
AGAAGGTAAAGTAACGGATCTCATAGCGGAGTTTGCGCCTGAACTCGTTC
GAAAGCCTATATTGGTGAACGAAGAAAAGGGTTGGATGTTGATGAATGAC
TACGGAACGGTTGTAAATCGCAGTAACAAGGCGGAATACGAAAGGTTTTG
TATTCCAATCGGACAGCTTCATCTTGAATCAATCCGTCACCTCGAAACTC
TGAAGGAGGCTGGCGTTTCATTTCAGTCTGCTCAATCTTTTATACAGCGG
ACGGAGAAAATGCTGAAGGATAAGGGAATCGGCGAAATTATGGGTAAATG
TGATGCGTTTCAAAGTTGTACCCATGAAGGTGTGGCGGATCTACAAGAAT
ACTGCGAGGCTGTGTGCGAGCTTTTGCGAGACCTTTACGAAAACGGAAAG
TGTCCTTTGAGTCTGGTACATGGGGACTTGCCCGACAATATGATCAAGGG
ATATGACGATTCATGCATTCTTTTCGACTGGGGAGCTGCCCGAATTGATT
TTCCGTTATGCGACCTACTGGCAATGGAAAGTAATGTAAGTTCGGATGTC
TTTGAAGAATATCTGAGCTTGTGGGAAGCGTATGCCTCACCATCTGAACT
ACGGTCCTTGTTTGGAATAATATTTATCAAAGTTAGACTTATCTGGGTTT
TGAGGGAATATGAGGAAGAAATAAAGCTTCAGCCGATCAACAGGCTAGAA
GATATTACAGTAGATATGCTTGGAAATTTGTTGGTCGACGCCAAAGAAGA
AATAGGAACGAGGAAGTTACAAGTTAAGAACAGAGACTGA
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