Ggra11038.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11038.t1
Unique NameGgra11038.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000894_piloncontigtig00000894_pilon:176090..176782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121481.AUAS01000004_gene1595
PFAMsLactonase
Max annot lvl976|Bacteroidetes
KEGG rclassRC00537
KEGG koko:K07404
KEGG ReactionR02035
KEGG Pathwayko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00004,M00006,M00008
Evalue7.18e-23
EggNOG OGsCOG2706@1|root,COG2706@2|Bacteria,4NE87@976|Bacteroidetes,47KQB@768503|Cytophagia
EC3.1.1.31
DescriptionPFAM 3-carboxy-cis,cis-muconate lactonizing enzyme
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11038Ggra11038Gracilaria gracilis GNS1m malegenetig00000894_pilon 176090..176782 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11038.t1.stop1Ggra11038.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000894_pilon 176090..176092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11038.t1.CDS1Ggra11038.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000894_pilon 176090..176782 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11038.t1.exon1Ggra11038.t1.exon1Gracilaria gracilis GNS1m maleexontig00000894_pilon 176090..176782 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11038.t1.start1Ggra11038.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000894_pilon 176780..176782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11038.t1Ggra11038.t1Gracilaria gracilis GNS1m malepolypeptidetig00000894_pilon 176090..176782 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11038.t1 ID=Ggra11038.t1|Name=Ggra11038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp
MRTPSLSDNYWQFDAPHPHMVLPYRDGLLVPDLGSDMLLFLTVAAQTGKL
TLAHNVTFEPADGPRHAALHPPSNTVYVVNEISLTVVTLRYGACGSAALA
VCDRHRLLPSPAREGVSAAAIRVTGDGRFLYASVRFPDSQLGKIVGYRLD
ARTGDIQARIGVWSSFGVHPRDFFVVDSVLHREACVSFVAIVNRDSDNLV
LVQRDRGSGMLRSHVSLSVNVTTPTSVLQF*
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spliced messenger RNA

>Ggra11038.t1 ID=Ggra11038.t1|Name=Ggra11038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000894_pilon:176090..176782- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCACCCCGTCGCTCTCTGACAACTACTGGCAGTTCGACGCTCCCCA
CCCTCACATGGTGCTACCGTATCGCGACGGCCTGCTCGTCCCGGATTTGG
GCTCGGACATGCTACTATTCCTCACCGTTGCTGCTCAAACGGGCAAGCTC
ACGCTCGCGCACAACGTCACCTTCGAACCAGCCGACGGCCCTCGTCATGC
CGCTCTGCATCCGCCAAGTAACACCGTGTACGTTGTGAACGAGATCTCAC
TTACCGTCGTCACGCTACGCTACGGCGCGTGCGGCTCCGCCGCACTCGCT
GTGTGTGATCGCCACCGATTGCTCCCGTCCCCTGCGCGTGAAGGCGTGTC
AGCCGCCGCAATCAGGGTGACTGGCGATGGGCGCTTTCTGTACGCGTCGG
TGCGCTTCCCTGATTCGCAGCTTGGCAAGATTGTGGGGTACCGATTGGAT
GCGCGTACGGGCGATATACAAGCGCGCATAGGCGTGTGGAGTTCGTTCGG
CGTTCATCCGCGCGACTTTTTTGTGGTTGACAGCGTCTTGCATCGAGAAG
CGTGTGTTAGCTTCGTTGCCATTGTCAACCGAGACTCGGACAACTTGGTT
CTGGTACAAAGGGATAGAGGTTCTGGAATGTTACGCTCGCACGTTTCATT
GTCGGTAAATGTCACCACTCCAACTTCTGTTTTGCAGTTTTGA
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protein sequence of Ggra11038.t1

>Ggra11038.t1 ID=Ggra11038.t1|Name=Ggra11038.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=231bp
MRTPSLSDNYWQFDAPHPHMVLPYRDGLLVPDLGSDMLLFLTVAAQTGKL
TLAHNVTFEPADGPRHAALHPPSNTVYVVNEISLTVVTLRYGACGSAALA
VCDRHRLLPSPAREGVSAAAIRVTGDGRFLYASVRFPDSQLGKIVGYRLD
ARTGDIQARIGVWSSFGVHPRDFFVVDSVLHREACVSFVAIVNRDSDNLV
LVQRDRGSGMLRSHVSLSVNVTTPTSVLQF*
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mRNA from alignment at tig00000894_pilon:176090..176782-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11038.t1 ID=Ggra11038.t1|Name=Ggra11038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000894_pilon:176090..176782- (Gracilaria gracilis GNS1m male)
ATGCGCACCCCGTCGCTCTCTGACAACTACTGGCAGTTCGACGCTCCCCA
CCCTCACATGGTGCTACCGTATCGCGACGGCCTGCTCGTCCCGGATTTGG
GCTCGGACATGCTACTATTCCTCACCGTTGCTGCTCAAACGGGCAAGCTC
ACGCTCGCGCACAACGTCACCTTCGAACCAGCCGACGGCCCTCGTCATGC
CGCTCTGCATCCGCCAAGTAACACCGTGTACGTTGTGAACGAGATCTCAC
TTACCGTCGTCACGCTACGCTACGGCGCGTGCGGCTCCGCCGCACTCGCT
GTGTGTGATCGCCACCGATTGCTCCCGTCCCCTGCGCGTGAAGGCGTGTC
AGCCGCCGCAATCAGGGTGACTGGCGATGGGCGCTTTCTGTACGCGTCGG
TGCGCTTCCCTGATTCGCAGCTTGGCAAGATTGTGGGGTACCGATTGGAT
GCGCGTACGGGCGATATACAAGCGCGCATAGGCGTGTGGAGTTCGTTCGG
CGTTCATCCGCGCGACTTTTTTGTGGTTGACAGCGTCTTGCATCGAGAAG
CGTGTGTTAGCTTCGTTGCCATTGTCAACCGAGACTCGGACAACTTGGTT
CTGGTACAAAGGGATAGAGGTTCTGGAATGTTACGCTCGCACGTTTCATT
GTCGGTAAATGTCACCACTCCAACTTCTGTTTTGCAGTTTTGA
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Coding sequence (CDS) from alignment at tig00000894_pilon:176090..176782-

>Ggra11038.t1 ID=Ggra11038.t1|Name=Ggra11038.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00000894_pilon:176090..176782- (Gracilaria gracilis GNS1m male)
ATGCGCACCCCGTCGCTCTCTGACAACTACTGGCAGTTCGACGCTCCCCA
CCCTCACATGGTGCTACCGTATCGCGACGGCCTGCTCGTCCCGGATTTGG
GCTCGGACATGCTACTATTCCTCACCGTTGCTGCTCAAACGGGCAAGCTC
ACGCTCGCGCACAACGTCACCTTCGAACCAGCCGACGGCCCTCGTCATGC
CGCTCTGCATCCGCCAAGTAACACCGTGTACGTTGTGAACGAGATCTCAC
TTACCGTCGTCACGCTACGCTACGGCGCGTGCGGCTCCGCCGCACTCGCT
GTGTGTGATCGCCACCGATTGCTCCCGTCCCCTGCGCGTGAAGGCGTGTC
AGCCGCCGCAATCAGGGTGACTGGCGATGGGCGCTTTCTGTACGCGTCGG
TGCGCTTCCCTGATTCGCAGCTTGGCAAGATTGTGGGGTACCGATTGGAT
GCGCGTACGGGCGATATACAAGCGCGCATAGGCGTGTGGAGTTCGTTCGG
CGTTCATCCGCGCGACTTTTTTGTGGTTGACAGCGTCTTGCATCGAGAAG
CGTGTGTTAGCTTCGTTGCCATTGTCAACCGAGACTCGGACAACTTGGTT
CTGGTACAAAGGGATAGAGGTTCTGGAATGTTACGCTCGCACGTTTCATT
GTCGGTAAATGTCACCACTCCAACTTCTGTTTTGCAGTTTTGA
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