Ggra10717.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10717.t1
Unique Name	Ggra10717.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	432

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000888_pilon	contig	tig00000888_pilon:679168..680463 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1349785.BAUG01000025_gene1556
PFAMs	Lactonase,Peptidase_S9
Max annot lvl	2\|Bacteria
Evalue	6.16e-41
EggNOG OGs	COG2706@1\|root,COG2706@2\|Bacteria
Description	6-phosphogluconolactonase activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10717	Ggra10717	Gracilaria gracilis GNS1m male	gene	tig00000888_pilon 679168..680463 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10717.t1.start1	Ggra10717.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000888_pilon 679168..679170 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10717.t1.CDS1	Ggra10717.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000888_pilon 679168..680463 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10717.t1.exon1	Ggra10717.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000888_pilon 679168..680463 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10717.t1.stop1	Ggra10717.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000888_pilon 680461..680463 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10717.t1	Ggra10717.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000888_pilon 679168..680463 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000888_pilon:679168..680463+
coding sequence from alignment at tig00000888_pilon:679168..680463+

mRNA sequence

>Ggra10717.t1 ID=Ggra10717.t1|Name=Ggra10717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp
MAHFPLIITALLTACLLSCAPAQKASFKLDLANVKKPSGLADFVGGVYAM
SNDLEQNTIVVYARRRNGTLALLDPALKTGGKGAILSFDTGADPLFSAFS
LVITSDNRFVLAVNAGSNSVSVFKIMRDFSLRLIHVQPVSGTGPNSIAVS
GRFVYVASVDADGEFDSPVSQAGVLSGFILARSGRLIPIPGSRRELTFRP
SAIQFSPDRRSLVVSSLFSSVMAAATGSIEEIVVFGVNPIGLLSSAPVSS
ATSTELNNAEGRNLPMVIGFEIVKSHGVQYVVVPEIRSIVGADGMAPQDQ
AASVSTWRLDSASRLFPVQLDVPVGSSVTSGQQDSCWIEFSANLRQFFVS
NTASNSTSVFSFDQGISTLENEVGATGPNPIDLWGSRDSKYLYQLFSGSV
GAFQVGEDGTLTEIQNPMNVPELNAQGVVAF*

spliced messenger RNA

>Ggra10717.t1 ID=Ggra10717.t1|Name=Ggra10717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000888_pilon:679168..680463+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACTTTCCATTGATTATCACCGCTTTGCTAACTGCTTGCTTGCT
CTCATGTGCACCCGCACAAAAGGCAAGCTTCAAGCTCGATTTAGCCAACG
TCAAGAAACCATCGGGCCTCGCTGACTTCGTGGGTGGTGTGTATGCCATG
TCTAATGATCTTGAACAGAATACGATCGTCGTTTACGCACGCCGAAGGAA
CGGCACCCTTGCGCTGTTGGACCCTGCGCTTAAGACGGGAGGAAAAGGCG
CCATTCTCAGCTTCGACACGGGTGCTGACCCGCTATTCTCGGCCTTCTCT
CTCGTTATCACGTCTGATAACCGCTTCGTTCTGGCTGTCAATGCGGGCAG
TAACTCCGTTTCAGTTTTCAAAATAATGCGCGACTTCTCCCTCCGCCTCA
TTCATGTACAACCCGTTTCCGGAACTGGACCAAACTCCATTGCAGTCTCT
GGGAGGTTTGTCTACGTTGCTAGCGTAGACGCAGACGGTGAATTTGACAG
CCCGGTGTCCCAGGCTGGAGTCCTCTCAGGGTTTATTTTGGCTCGCTCAG
GCAGACTCATTCCCATTCCAGGCAGTCGCCGAGAGCTCACTTTCCGCCCG
TCAGCCATTCAATTTTCGCCTGATCGTCGCTCTTTGGTTGTCTCTTCCTT
GTTTTCTAGCGTCATGGCCGCCGCAACCGGCAGTATTGAAGAAATCGTGG
TCTTCGGGGTCAATCCAATTGGCCTGCTCAGCTCCGCTCCTGTTTCCAGT
GCAACATCAACGGAACTAAACAACGCTGAAGGTCGTAATCTTCCGATGGT
AATTGGTTTCGAAATCGTGAAGTCTCACGGCGTACAATACGTAGTTGTGC
CTGAAATACGCAGCATAGTCGGTGCCGATGGTATGGCTCCTCAAGACCAA
GCTGCTTCGGTATCTACGTGGCGACTTGACTCCGCAAGTCGTCTTTTCCC
TGTGCAGCTTGACGTCCCCGTCGGATCATCCGTGACTTCCGGTCAACAAG
ACTCTTGTTGGATTGAGTTTTCGGCTAACTTGCGACAATTTTTTGTTTCT
AATACTGCCTCAAACTCTACTTCTGTGTTCTCATTCGATCAGGGTATTTC
AACTCTTGAGAACGAAGTTGGTGCAACTGGACCGAATCCTATTGATCTTT
GGGGATCCAGGGATAGCAAATATTTATATCAACTGTTCAGTGGATCTGTT
GGGGCTTTCCAAGTTGGAGAGGATGGAACTCTCACTGAAATCCAAAATCC
AATGAATGTTCCCGAACTGAATGCGCAGGGGGTCGTTGCTTTTTAA

protein sequence of Ggra10717.t1

>Ggra10717.t1 ID=Ggra10717.t1|Name=Ggra10717.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=432bp
MAHFPLIITALLTACLLSCAPAQKASFKLDLANVKKPSGLADFVGGVYAM
SNDLEQNTIVVYARRRNGTLALLDPALKTGGKGAILSFDTGADPLFSAFS
LVITSDNRFVLAVNAGSNSVSVFKIMRDFSLRLIHVQPVSGTGPNSIAVS
GRFVYVASVDADGEFDSPVSQAGVLSGFILARSGRLIPIPGSRRELTFRP
SAIQFSPDRRSLVVSSLFSSVMAAATGSIEEIVVFGVNPIGLLSSAPVSS
ATSTELNNAEGRNLPMVIGFEIVKSHGVQYVVVPEIRSIVGADGMAPQDQ
AASVSTWRLDSASRLFPVQLDVPVGSSVTSGQQDSCWIEFSANLRQFFVS
NTASNSTSVFSFDQGISTLENEVGATGPNPIDLWGSRDSKYLYQLFSGSV
GAFQVGEDGTLTEIQNPMNVPELNAQGVVAF*

mRNA from alignment at tig00000888_pilon:679168..680463+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10717.t1 ID=Ggra10717.t1|Name=Ggra10717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000888_pilon:679168..680463+ (Gracilaria gracilis GNS1m male)
ATGGCTCACTTTCCATTGATTATCACCGCTTTGCTAACTGCTTGCTTGCT
CTCATGTGCACCCGCACAAAAGGCAAGCTTCAAGCTCGATTTAGCCAACG
TCAAGAAACCATCGGGCCTCGCTGACTTCGTGGGTGGTGTGTATGCCATG
TCTAATGATCTTGAACAGAATACGATCGTCGTTTACGCACGCCGAAGGAA
CGGCACCCTTGCGCTGTTGGACCCTGCGCTTAAGACGGGAGGAAAAGGCG
CCATTCTCAGCTTCGACACGGGTGCTGACCCGCTATTCTCGGCCTTCTCT
CTCGTTATCACGTCTGATAACCGCTTCGTTCTGGCTGTCAATGCGGGCAG
TAACTCCGTTTCAGTTTTCAAAATAATGCGCGACTTCTCCCTCCGCCTCA
TTCATGTACAACCCGTTTCCGGAACTGGACCAAACTCCATTGCAGTCTCT
GGGAGGTTTGTCTACGTTGCTAGCGTAGACGCAGACGGTGAATTTGACAG
CCCGGTGTCCCAGGCTGGAGTCCTCTCAGGGTTTATTTTGGCTCGCTCAG
GCAGACTCATTCCCATTCCAGGCAGTCGCCGAGAGCTCACTTTCCGCCCG
TCAGCCATTCAATTTTCGCCTGATCGTCGCTCTTTGGTTGTCTCTTCCTT
GTTTTCTAGCGTCATGGCCGCCGCAACCGGCAGTATTGAAGAAATCGTGG
TCTTCGGGGTCAATCCAATTGGCCTGCTCAGCTCCGCTCCTGTTTCCAGT
GCAACATCAACGGAACTAAACAACGCTGAAGGTCGTAATCTTCCGATGGT
AATTGGTTTCGAAATCGTGAAGTCTCACGGCGTACAATACGTAGTTGTGC
CTGAAATACGCAGCATAGTCGGTGCCGATGGTATGGCTCCTCAAGACCAA
GCTGCTTCGGTATCTACGTGGCGACTTGACTCCGCAAGTCGTCTTTTCCC
TGTGCAGCTTGACGTCCCCGTCGGATCATCCGTGACTTCCGGTCAACAAG
ACTCTTGTTGGATTGAGTTTTCGGCTAACTTGCGACAATTTTTTGTTTCT
AATACTGCCTCAAACTCTACTTCTGTGTTCTCATTCGATCAGGGTATTTC
AACTCTTGAGAACGAAGTTGGTGCAACTGGACCGAATCCTATTGATCTTT
GGGGATCCAGGGATAGCAAATATTTATATCAACTGTTCAGTGGATCTGTT
GGGGCTTTCCAAGTTGGAGAGGATGGAACTCTCACTGAAATCCAAAATCC
AATGAATGTTCCCGAACTGAATGCGCAGGGGGTCGTTGCTTTTTAA

Coding sequence (CDS) from alignment at tig00000888_pilon:679168..680463+

>Ggra10717.t1 ID=Ggra10717.t1|Name=Ggra10717.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1296bp|location=Sequence derived from alignment at tig00000888_pilon:679168..680463+ (Gracilaria gracilis GNS1m male)
ATGGCTCACTTTCCATTGATTATCACCGCTTTGCTAACTGCTTGCTTGCT
CTCATGTGCACCCGCACAAAAGGCAAGCTTCAAGCTCGATTTAGCCAACG
TCAAGAAACCATCGGGCCTCGCTGACTTCGTGGGTGGTGTGTATGCCATG
TCTAATGATCTTGAACAGAATACGATCGTCGTTTACGCACGCCGAAGGAA
CGGCACCCTTGCGCTGTTGGACCCTGCGCTTAAGACGGGAGGAAAAGGCG
CCATTCTCAGCTTCGACACGGGTGCTGACCCGCTATTCTCGGCCTTCTCT
CTCGTTATCACGTCTGATAACCGCTTCGTTCTGGCTGTCAATGCGGGCAG
TAACTCCGTTTCAGTTTTCAAAATAATGCGCGACTTCTCCCTCCGCCTCA
TTCATGTACAACCCGTTTCCGGAACTGGACCAAACTCCATTGCAGTCTCT
GGGAGGTTTGTCTACGTTGCTAGCGTAGACGCAGACGGTGAATTTGACAG
CCCGGTGTCCCAGGCTGGAGTCCTCTCAGGGTTTATTTTGGCTCGCTCAG
GCAGACTCATTCCCATTCCAGGCAGTCGCCGAGAGCTCACTTTCCGCCCG
TCAGCCATTCAATTTTCGCCTGATCGTCGCTCTTTGGTTGTCTCTTCCTT
GTTTTCTAGCGTCATGGCCGCCGCAACCGGCAGTATTGAAGAAATCGTGG
TCTTCGGGGTCAATCCAATTGGCCTGCTCAGCTCCGCTCCTGTTTCCAGT
GCAACATCAACGGAACTAAACAACGCTGAAGGTCGTAATCTTCCGATGGT
AATTGGTTTCGAAATCGTGAAGTCTCACGGCGTACAATACGTAGTTGTGC
CTGAAATACGCAGCATAGTCGGTGCCGATGGTATGGCTCCTCAAGACCAA
GCTGCTTCGGTATCTACGTGGCGACTTGACTCCGCAAGTCGTCTTTTCCC
TGTGCAGCTTGACGTCCCCGTCGGATCATCCGTGACTTCCGGTCAACAAG
ACTCTTGTTGGATTGAGTTTTCGGCTAACTTGCGACAATTTTTTGTTTCT
AATACTGCCTCAAACTCTACTTCTGTGTTCTCATTCGATCAGGGTATTTC
AACTCTTGAGAACGAAGTTGGTGCAACTGGACCGAATCCTATTGATCTTT
GGGGATCCAGGGATAGCAAATATTTATATCAACTGTTCAGTGGATCTGTT
GGGGCTTTCCAAGTTGGAGAGGATGGAACTCTCACTGAAATCCAAAATCC
AATGAATGTTCCCGAACTGAATGCGCAGGGGGTCGTTGCTTTTTAA