Ggra10711.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10711.t1
Unique NameGgra10711.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:622827..623600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10711Ggra10711Gracilaria gracilis GNS1m malegenetig00000888_pilon 622827..623600 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10711.t1.start1Ggra10711.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 622827..622829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10711.t1.CDS1Ggra10711.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 622827..623600 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10711.t1.exon1Ggra10711.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 622827..623600 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10711.t1.stop1Ggra10711.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 623598..623600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10711.t1Ggra10711.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 622827..623600 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10711.t1 ID=Ggra10711.t1|Name=Ggra10711.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MNDGMAPQNEFERDLYLSSPTAPSSLSNNESLFSNPLERRYARVHGEEKN
MVLSRRVQTYLQGYICENLDHSAYPYEVKATKQFHLCSVFNESNEFSIET
KEWFDRRTHNNSHARQKYYIAAEFITVEEAHNSGRESLELSQSRSAPNLK
KDLYYGNVKKIVEVCVQTSMRDEPFYVIFAEVQWQYGLIHNKELDLVYSE
GAGRRRTTYEPIHCIQRVVGYLDTRGRRYILDKKRGSTITCGLATLRGVG
SEDVIRS*
back to top

spliced messenger RNA

>Ggra10711.t1 ID=Ggra10711.t1|Name=Ggra10711.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000888_pilon:622827..623600+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGATGGAATGGCACCTCAGAATGAGTTTGAGAGGGATCTTTATCT
TTCTTCCCCTACTGCACCCAGTTCTTTGTCGAATAACGAGAGCTTGTTTT
CAAACCCACTAGAACGAAGATACGCCCGTGTTCATGGAGAAGAAAAGAAT
ATGGTGCTTTCAAGACGTGTGCAAACCTATCTCCAAGGTTACATCTGTGA
AAACTTAGATCACTCGGCATATCCGTACGAAGTCAAAGCCACTAAGCAAT
TTCATCTGTGTTCTGTCTTCAACGAGAGCAATGAATTCAGCATTGAAACA
AAAGAATGGTTTGATAGAAGAACCCATAACAATAGCCATGCTCGACAGAA
ATACTACATTGCGGCAGAGTTCATCACTGTAGAAGAAGCCCATAACTCAG
GAAGAGAATCCTTGGAGCTCAGCCAAAGTCGATCCGCTCCCAACCTGAAG
AAGGATTTGTACTATGGAAACGTGAAAAAAATAGTTGAGGTGTGTGTGCA
AACATCGATGAGAGACGAGCCATTCTATGTCATATTTGCTGAAGTTCAAT
GGCAGTACGGACTCATTCATAATAAGGAGCTTGATCTCGTCTACTCGGAG
GGAGCTGGACGAAGAAGAACAACTTACGAACCCATCCATTGTATCCAACG
CGTCGTAGGTTACTTGGACACAAGAGGTCGCCGTTACATACTTGATAAGA
AGAGAGGTTCAACGATCACATGTGGTCTAGCAACGCTCCGGGGAGTAGGA
AGTGAAGATGTAATTCGCTCTTGA
back to top

protein sequence of Ggra10711.t1

>Ggra10711.t1 ID=Ggra10711.t1|Name=Ggra10711.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MNDGMAPQNEFERDLYLSSPTAPSSLSNNESLFSNPLERRYARVHGEEKN
MVLSRRVQTYLQGYICENLDHSAYPYEVKATKQFHLCSVFNESNEFSIET
KEWFDRRTHNNSHARQKYYIAAEFITVEEAHNSGRESLELSQSRSAPNLK
KDLYYGNVKKIVEVCVQTSMRDEPFYVIFAEVQWQYGLIHNKELDLVYSE
GAGRRRTTYEPIHCIQRVVGYLDTRGRRYILDKKRGSTITCGLATLRGVG
SEDVIRS*
back to top

mRNA from alignment at tig00000888_pilon:622827..623600+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10711.t1 ID=Ggra10711.t1|Name=Ggra10711.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000888_pilon:622827..623600+ (Gracilaria gracilis GNS1m male)
ATGAATGATGGAATGGCACCTCAGAATGAGTTTGAGAGGGATCTTTATCT
TTCTTCCCCTACTGCACCCAGTTCTTTGTCGAATAACGAGAGCTTGTTTT
CAAACCCACTAGAACGAAGATACGCCCGTGTTCATGGAGAAGAAAAGAAT
ATGGTGCTTTCAAGACGTGTGCAAACCTATCTCCAAGGTTACATCTGTGA
AAACTTAGATCACTCGGCATATCCGTACGAAGTCAAAGCCACTAAGCAAT
TTCATCTGTGTTCTGTCTTCAACGAGAGCAATGAATTCAGCATTGAAACA
AAAGAATGGTTTGATAGAAGAACCCATAACAATAGCCATGCTCGACAGAA
ATACTACATTGCGGCAGAGTTCATCACTGTAGAAGAAGCCCATAACTCAG
GAAGAGAATCCTTGGAGCTCAGCCAAAGTCGATCCGCTCCCAACCTGAAG
AAGGATTTGTACTATGGAAACGTGAAAAAAATAGTTGAGGTGTGTGTGCA
AACATCGATGAGAGACGAGCCATTCTATGTCATATTTGCTGAAGTTCAAT
GGCAGTACGGACTCATTCATAATAAGGAGCTTGATCTCGTCTACTCGGAG
GGAGCTGGACGAAGAAGAACAACTTACGAACCCATCCATTGTATCCAACG
CGTCGTAGGTTACTTGGACACAAGAGGTCGCCGTTACATACTTGATAAGA
AGAGAGGTTCAACGATCACATGTGGTCTAGCAACGCTCCGGGGAGTAGGA
AGTGAAGATGTAATTCGCTCTTGA
back to top

Coding sequence (CDS) from alignment at tig00000888_pilon:622827..623600+

>Ggra10711.t1 ID=Ggra10711.t1|Name=Ggra10711.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000888_pilon:622827..623600+ (Gracilaria gracilis GNS1m male)
ATGAATGATGGAATGGCACCTCAGAATGAGTTTGAGAGGGATCTTTATCT
TTCTTCCCCTACTGCACCCAGTTCTTTGTCGAATAACGAGAGCTTGTTTT
CAAACCCACTAGAACGAAGATACGCCCGTGTTCATGGAGAAGAAAAGAAT
ATGGTGCTTTCAAGACGTGTGCAAACCTATCTCCAAGGTTACATCTGTGA
AAACTTAGATCACTCGGCATATCCGTACGAAGTCAAAGCCACTAAGCAAT
TTCATCTGTGTTCTGTCTTCAACGAGAGCAATGAATTCAGCATTGAAACA
AAAGAATGGTTTGATAGAAGAACCCATAACAATAGCCATGCTCGACAGAA
ATACTACATTGCGGCAGAGTTCATCACTGTAGAAGAAGCCCATAACTCAG
GAAGAGAATCCTTGGAGCTCAGCCAAAGTCGATCCGCTCCCAACCTGAAG
AAGGATTTGTACTATGGAAACGTGAAAAAAATAGTTGAGGTGTGTGTGCA
AACATCGATGAGAGACGAGCCATTCTATGTCATATTTGCTGAAGTTCAAT
GGCAGTACGGACTCATTCATAATAAGGAGCTTGATCTCGTCTACTCGGAG
GGAGCTGGACGAAGAAGAACAACTTACGAACCCATCCATTGTATCCAACG
CGTCGTAGGTTACTTGGACACAAGAGGTCGCCGTTACATACTTGATAAGA
AGAGAGGTTCAACGATCACATGTGGTCTAGCAACGCTCCGGGGAGTAGGA
AGTGAAGATGTAATTCGCTCTTGA
back to top