Ggra9904.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9904.t1
Unique NameGgra9904.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:54887..55639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704441.1
Preferred nameCCDC101
PFAMsDUF1325
Max annot lvl2759|Eukaryota
KEGG koko:K11364
GOsGO:0000123,GO:0000124,GO:0000988,GO:0000989,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0031056,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034401,GO:0034502,GO:0034613,GO:0034629,GO:0035064,GO:0035065,GO:0036211,GO:0040029,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043970,GO:0043971,GO:0044154,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0047485,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0060255,GO:0061647,GO:0065007,GO:0070013,GO:0070199,GO:0070461,GO:0070727,GO:0070828,GO:0070868,GO:0071168,GO:0071169,GO:0071704,GO:0071840,GO:0072594,GO:0080090,GO:0097549,GO:0140030,GO:0140034,GO:0140110,GO:1901564,GO:1901983,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2000113,GO:2000615,GO:2000756,GO:2001141
Evalue1.32e-17
EggNOG OGsKOG3038@1|root,KOG3038@2759|Eukaryota
Descriptionmethylated histone binding
COG categoryADK
BRITEko00000,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9904Ggra9904Gracilaria gracilis GNS1m malegenetig00000887_pilon 54887..55639 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9904.t1.start1Ggra9904.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 54887..54889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9904.t1.CDS1Ggra9904.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 54887..55639 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9904.t1.exon1Ggra9904.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 54887..55639 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9904.t1.stop1Ggra9904.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 55637..55639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9904.t1Ggra9904.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 54887..55639 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9904.t1 ID=Ggra9904.t1|Name=Ggra9904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MLLTEECVHVQVPRAAAERQKFIAAQEKRWLSLGWDRTRYTTDLAQAATR
FLSAIAFSDHRHPIDLNLLSDDAGSPADAGSSAGSGASRGSRASRGSRGA
RASGKRRAENDAPARKPPKKPKRSNKSTVIASGTKVACLDRCGDAEEHQW
VLGTVSKYSSDSRKYEVIDDADGEAQIYSVPKRDLRVLPCKPHTFDSKKR
ILAVYPQTTVFYPAWLKSRKGRNWLVEFDDEDDQEENKLKEVDSRHIIQE
*
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spliced messenger RNA

>Ggra9904.t1 ID=Ggra9904.t1|Name=Ggra9904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000887_pilon:54887..55639+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
aTGTTACTCACGGAAGAATGCGTGCACGTACAAGTGCCGCGCGCCGCCGC
CGAACGTCAAAAGTTCATCGCCGCGCAAGAGAAGAGGTGGTTATCGCTTG
GCTGGGATCGCACTCGTTATACCACCGACCTCGCACAAGCGGCCACTCGT
TTCCTTTCCGCCATCGCATTCAGCGACCACAGGCATCCCATCGATCTGAA
TCTACTGTCCGATGACGCGGGCTCCCCCGCCGACGCCGGTTCGTCCGCGG
GCTCTGGAGCGTCTCGCGGGTCGCGCGCTTCTCGTGGCTCGCGCGGCGCG
CGCGCTTCTGGCAAGAGACGTGCGGAGAATGACGCTCCGGCCAGAAAACC
GCCCAAAAAGCCGAAGCGAAGTAACAAGTCTACTGTGATTGCTAGCGGCA
CCAAGGTGGCGTGTTTGGATAGGTGTGGTGACGCTGAGGAACATCAGTGG
GTTTTGGGCACGGTCAGCAAGTACTCGTCGGATAGTCGCAAGTATGAAGT
GATTGATGACGCCGATGGAGAGGCGCAGATTTACTCGGTGCCTAAGAGGG
ACCTTCGTGTTCTACCGTGCAAGCCGCATACTTTTGATTCGAAAAAGAGG
ATTCTGGCGGTGTACCCGCAGACTACGGTGTTCTACCCCGCGTGGCTCAA
GTCGCGAAAGGGCAGGAACTGGTTGGTGGAGTTTGACGATGAGGATGACC
AGGAGGAGAACAAGCTGAAAGAGGTGGATTCGCGACACATCATTCAGGAA
TGA
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protein sequence of Ggra9904.t1

>Ggra9904.t1 ID=Ggra9904.t1|Name=Ggra9904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MLLTEECVHVQVPRAAAERQKFIAAQEKRWLSLGWDRTRYTTDLAQAATR
FLSAIAFSDHRHPIDLNLLSDDAGSPADAGSSAGSGASRGSRASRGSRGA
RASGKRRAENDAPARKPPKKPKRSNKSTVIASGTKVACLDRCGDAEEHQW
VLGTVSKYSSDSRKYEVIDDADGEAQIYSVPKRDLRVLPCKPHTFDSKKR
ILAVYPQTTVFYPAWLKSRKGRNWLVEFDDEDDQEENKLKEVDSRHIIQE
*
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mRNA from alignment at tig00000887_pilon:54887..55639+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9904.t1 ID=Ggra9904.t1|Name=Ggra9904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000887_pilon:54887..55639+ (Gracilaria gracilis GNS1m male)
aTGTTACTCACGGAAGAATGCGTGCACGTACAAGTGCCGCGCGCCGCCGC
CGAACGTCAAAAGTTCATCGCCGCGCAAGAGAAGAGGTGGTTATCGCTTG
GCTGGGATCGCACTCGTTATACCACCGACCTCGCACAAGCGGCCACTCGT
TTCCTTTCCGCCATCGCATTCAGCGACCACAGGCATCCCATCGATCTGAA
TCTACTGTCCGATGACGCGGGCTCCCCCGCCGACGCCGGTTCGTCCGCGG
GCTCTGGAGCGTCTCGCGGGTCGCGCGCTTCTCGTGGCTCGCGCGGCGCG
CGCGCTTCTGGCAAGAGACGTGCGGAGAATGACGCTCCGGCCAGAAAACC
GCCCAAAAAGCCGAAGCGAAGTAACAAGTCTACTGTGATTGCTAGCGGCA
CCAAGGTGGCGTGTTTGGATAGGTGTGGTGACGCTGAGGAACATCAGTGG
GTTTTGGGCACGGTCAGCAAGTACTCGTCGGATAGTCGCAAGTATGAAGT
GATTGATGACGCCGATGGAGAGGCGCAGATTTACTCGGTGCCTAAGAGGG
ACCTTCGTGTTCTACCGTGCAAGCCGCATACTTTTGATTCGAAAAAGAGG
ATTCTGGCGGTGTACCCGCAGACTACGGTGTTCTACCCCGCGTGGCTCAA
GTCGCGAAAGGGCAGGAACTGGTTGGTGGAGTTTGACGATGAGGATGACC
AGGAGGAGAACAAGCTGAAAGAGGTGGATTCGCGACACATCATTCAGGAA
TGA
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Coding sequence (CDS) from alignment at tig00000887_pilon:54887..55639+

>Ggra9904.t1 ID=Ggra9904.t1|Name=Ggra9904.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000887_pilon:54887..55639+ (Gracilaria gracilis GNS1m male)
aTGTTACTCACGGAAGAATGCGTGCACGTACAAGTGCCGCGCGCCGCCGC
CGAACGTCAAAAGTTCATCGCCGCGCAAGAGAAGAGGTGGTTATCGCTTG
GCTGGGATCGCACTCGTTATACCACCGACCTCGCACAAGCGGCCACTCGT
TTCCTTTCCGCCATCGCATTCAGCGACCACAGGCATCCCATCGATCTGAA
TCTACTGTCCGATGACGCGGGCTCCCCCGCCGACGCCGGTTCGTCCGCGG
GCTCTGGAGCGTCTCGCGGGTCGCGCGCTTCTCGTGGCTCGCGCGGCGCG
CGCGCTTCTGGCAAGAGACGTGCGGAGAATGACGCTCCGGCCAGAAAACC
GCCCAAAAAGCCGAAGCGAAGTAACAAGTCTACTGTGATTGCTAGCGGCA
CCAAGGTGGCGTGTTTGGATAGGTGTGGTGACGCTGAGGAACATCAGTGG
GTTTTGGGCACGGTCAGCAAGTACTCGTCGGATAGTCGCAAGTATGAAGT
GATTGATGACGCCGATGGAGAGGCGCAGATTTACTCGGTGCCTAAGAGGG
ACCTTCGTGTTCTACCGTGCAAGCCGCATACTTTTGATTCGAAAAAGAGG
ATTCTGGCGGTGTACCCGCAGACTACGGTGTTCTACCCCGCGTGGCTCAA
GTCGCGAAAGGGCAGGAACTGGTTGGTGGAGTTTGACGATGAGGATGACC
AGGAGGAGAACAAGCTGAAAGAGGTGGATTCGCGACACATCATTCAGGAA
TGA
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