Ggra9349.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9349.t1
Unique NameGgra9349.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length704
Homology
BLAST of Ggra9349.t1 vs. uniprot
Match: A0A2V3IXZ5 (Polycomb protein Su(Z)12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXZ5_9FLOR)

HSP 1 Score: 937 bits (2423), Expect = 0.000e+0
Identity = 483/708 (68.22%), Postives = 556/708 (78.53%), Query Frame = 0
Query:    1 MSTSQRGANRRPSPPILPALLEVHRRGKPPFLVRNLRYVHDDRQRARRRLWDISWTRPSYRSAPGARHLLLTVRPSRCVLRAGIRTRLFNT-RLFRDGEYVPLTAAMRLCLCVRQEGGHYVSFSLRDLSVRVWPAEDLSAGLVEPSDVAIRETFDISAVLPVLSSDAEALSLVVELMPTANDNSAANRTSDKLRGELVLWEKGSANGTVVPNGFVTLPLYLVNDSATQPKHVVLERAVRQSSASF--APLKGDLP--FVGAGAASIVLQLEGAPQHSISKAVRRHKPNLMITLTYTSQQVPHWDGIVRHDFVCPWCHRNCYRYRTLLCHFQMEHEQMKFQLTSLKSAKPSDGDGARSTTAARNETVPFLLRFSVERMDPQPAQSVDPLSSSVPKRMRSSDGTVQLPEQIIYANPHRYASYVANANNSAGADEKVREAVERVSLRDN-ALSSDLQSVASTELYDNTRRDILSAVQEELSRCCKHCQRPHDFAYKANTEFCSEWCEAIYTINRDEDGVSLRGNQRYFPLTSFSSCNARKRFDFRQSLGHRKLFHVVTMTPVKEEHYDEDDPDSEDEVDQSWRGRLAIERAMYLENTTTTETLFMVMWNKFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAFLRVLHMHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERSVPGSNGRGSRSRRFGAR 702
            +ST   G     +PPILPALLE+HRRG+PPFLVR L+YVH+DR+RARRRLWD+ WTRPSYRSAPGARHL+LTVRPSRC+LR GIR +LF   R  RD  Y PL A +RLCLCVRQ+ GHYVSFSLR+ S+RVWPAEDL    + P D++ RE FD+SAVLP+LSS+A+ALS+VVEL P   +    +   +KLRGELV+WEKGSANGTVVPNG+V++PLY+V D A QPK VVLERAVRQ++     +P     P   VGAGAASI+L LEGAPQH+ISK V  HKP +M+TLTYTS++VP W+GIVRHDFVCPWCHRNCYRYRTLLCHFQMEH+QMKF L SL   K S G    S      ++VPFL+RFSVER+D    + +   SSSVPKR RSSDG+VQLPE ++Y NP RY SY+ NA  SA ADE+VREA+ER+SLR++  LS DL S ASTELY+N RRD+LS V EELS CCKHCQRPHD ++K N  FCS+WCEA Y  +   D           PL+  +S   RKR +FRQSLGHRKLFHVVTM PVKEEH+DEDDPDSEDEVDQSWRG LAIER M LE+  T ETL+MVMWNKFAHE+FPLP LYGDRFTRY LELFAIENRAHIIRLKLRLKF+ FL VLH+HGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERS+ G NGRGSR RR G R
Sbjct:    5 LSTVNGGKFGPSAPPILPALLEIHRRGRPPFLVRTLKYVHEDRKRARRRLWDLGWTRPSYRSAPGARHLILTVRPSRCILRPGIRDKLFEAPREVRDA-YTPLLARVRLCLCVRQQNGHYVSFSLRERSLRVWPAEDLFGKDLAPEDISAREAFDVSAVLPILSSEADALSIVVELAPDRGEMHDVSVDHEKLRGELVVWEKGSANGTVVPNGYVSVPLYVVTDKAIQPKQVVLERAVRQANPPLINSPAGQGAPKGLVGAGAASILLHLEGAPQHAISKFVNNHKPRVMVTLTYTSKKVPQWNGIVRHDFVCPWCHRNCYRYRTLLCHFQMEHDQMKFALMSLGPNK-SAGSDEESDGLWDRQSVPFLVRFSVERIDQPCVRVIHAPSSSVPKRTRSSDGSVQLPEHVVYVNPDRYGSYMTNATTSAKADEQVREAIERISLRESRGLSEDL-SAASTELYENRRRDLLSTVDEELSACCKHCQRPHDHSFKGNVNFCSDWCEATYMASPHLD----------IPLSDIASGRRRKRINFRQSLGHRKLFHVVTMAPVKEEHFDEDDPDSEDEVDQSWRGHLAIERVMALEDANTMETLWMVMWNKFAHEHFPLPGLYGDRFTRYGLELFAIENRAHIIRLKLRLKFIGFLHVLHVHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERSIVGGNGRGSRGRRNGNR 699          
BLAST of Ggra9349.t1 vs. uniprot
Match: R7QS39 (VEFS-Box domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS39_CHOCR)

HSP 1 Score: 395 bits (1015), Expect = 4.690e-125
Identity = 253/648 (39.04%), Postives = 366/648 (56.48%), Query Frame = 0
Query:   96 DGEYVPLTAAMRLCLCVRQEGGHYVSFSLRDLSVRVWPAEDLSAGLVEPSDVAIRETFDISAVLPVLSSDAEALSLVVELMPTANDNSAANRTSDKLRGELVLWEKGSANGTVVPNGFVTLPL-----------------------YLVNDSATQP-----KHVVLERAVRQSSASFAPLKGDLPFVGAGA-ASIVLQLEGAPQHSISKAVRRHKPNLMITLTYTSQQVPHWDGIVRHDFVCPWCHRNCYRYRTLLCHFQMEHEQMKFQLTSLKSAKPSDGDGARSTTAARNETVPFLLRFSVERMDPQPAQSVDPLSSSVPKRMRSSDGTVQLPEQI-------IYANPHRYASYVANA---NNSAGADEKVREAVERVSLRDNA--LSSDLQSVASTELYDNTRRDILSAVQEELSRCCKHCQRPHDFA-YKANTE--FCSEWCEAIYTIN-RDEDGV--SLRGNQRYFPLTSFSSCNARKRFDFRQSLGHRKLFHVVTMTPVKEEHYDEDDPDSEDEVDQSWRGRLAIERAMYLENTTTTETLFMVMWNKFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAFLRVLHMHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERSV-PGSNGRGSR 695
            +  YVP  A +R+ L +  + G  V+F  R ++VR+WPAE +  G VE  DVA   TFD+SA + +  +   ALSL+++L   ++     N     LRGEL+L ++   +  V PNG V++P+                       +L+++ +++      + V   RA R S  +    +G +P       A+IVL + GA +H+        +P + IT +YTS++ P W+G+VRHDF+CPWCHRNCYR+RTLL HFQ+EH+ M F L  L    P  G G  +   A  + VPF L+F V       ++S + +     KR    DG   L   +       +Y NP++Y  +  +     N +G D   R  + RVSL D      SD +SV +    D+  RD+   ++EEL   CK+CQR    + Y AN    FCSE+CE I+     DE G   + RG     P+   SS   +  F++++ LGH +L+HVV++   KEEHYD +DPDSE+EVD SWR  L++ER  +LEN T  E L  +MWNKFAHEN+P+PSLY +R+TR+TLELFA+E    +   KLR++F+ FLR LH+HGLID+ A+LSI +CLDGKKKRRD+ +S+RPE +  P + G  SR
Sbjct:    6 ESPYVPPAAQLRVSLVLHTDTGR-VAFGHRAVTVRLWPAEHVEKG-VEVQDVAAAVTFDLSAAIALRGATPSALSLLLQLTSNSDMAKQENAHPATLRGELLLIDRVLGDKPV-PNGRVSVPMRFASADASPVPPKPQGKTPLSREHLLDEDSSEEITSGEERVASTRAPRASGKA----RGKVPNSSRQPDATIVLDVRGAIEHAKQALASPERPKVFITCSYTSKENPVWNGLVRHDFICPWCHRNCYRFRTLLNHFQVEHDDMGFALEGL----PGPGSGPSN---AHVQGVPFTLKFEVSATG---SRSEERVRRESQKRNDGKDGERGLSHPMSNEDFEDVYVNPYKYPFFGTSTLEEKNESGTDI-ARNGMARVSLADTEGKSQSDAESVETDVEGDDPTRDVPDILKEELWNRCKNCQRGQPRSNYFANDRQSFCSEFCEIIFAKKMEDERGTPPAERG-----PMLGLSSLPRKPPFNYQEKLGHLQLYHVVSVCEAKEEHYDPEDPDSEEEVDHSWRLDLSMERIRHLENATPKEKLLWMMWNKFAHENYPIPSLYAERYTRFTLELFALEYGKQVAFYKLRVQFVGFLRALHIHGLIDTTAILSIMKCLDGKKKRRDLGVSTRPEMARDPNTTGASSR 630          
The following BLAST results are available for this feature:
BLAST of Ggra9349.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IXZ50.000e+068.22Polycomb protein Su(Z)12 n=1 Tax=Gracilariopsis ch... [more]
R7QS394.690e-12539.04VEFS-Box domain-containing protein n=1 Tax=Chondru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019135Polycomb protein, VEFS-BoxPFAMPF09733VEFS-Boxcoord: 537..660
e-value: 2.3E-12
score: 46.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 678..703
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..641
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 642..664
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 665..703
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 308..329

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:52065..54176 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9349.t1Ggra9349.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 52065..54176 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9349.t1 ID=Ggra9349.t1|Name=Ggra9349.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=704bp
MSTSQRGANRRPSPPILPALLEVHRRGKPPFLVRNLRYVHDDRQRARRRL
WDISWTRPSYRSAPGARHLLLTVRPSRCVLRAGIRTRLFNTRLFRDGEYV
PLTAAMRLCLCVRQEGGHYVSFSLRDLSVRVWPAEDLSAGLVEPSDVAIR
ETFDISAVLPVLSSDAEALSLVVELMPTANDNSAANRTSDKLRGELVLWE
KGSANGTVVPNGFVTLPLYLVNDSATQPKHVVLERAVRQSSASFAPLKGD
LPFVGAGAASIVLQLEGAPQHSISKAVRRHKPNLMITLTYTSQQVPHWDG
IVRHDFVCPWCHRNCYRYRTLLCHFQMEHEQMKFQLTSLKSAKPSDGDGA
RSTTAARNETVPFLLRFSVERMDPQPAQSVDPLSSSVPKRMRSSDGTVQL
PEQIIYANPHRYASYVANANNSAGADEKVREAVERVSLRDNALSSDLQSV
ASTELYDNTRRDILSAVQEELSRCCKHCQRPHDFAYKANTEFCSEWCEAI
YTINRDEDGVSLRGNQRYFPLTSFSSCNARKRFDFRQSLGHRKLFHVVTM
TPVKEEHYDEDDPDSEDEVDQSWRGRLAIERAMYLENTTTTETLFMVMWN
KFAHENFPLPSLYGDRFTRYTLELFAIENRAHIIRLKLRLKFLAFLRVLH
MHGLIDSVAVLSIFQCLDGKKKRRDIALSSRPERSVPGSNGRGSRSRRFG
ART*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019135Polycomb_protein_VEFS-Box
IPR013087Znf_C2H2_type