Ggra9355.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9355.t1
Unique NameGgra9355.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:67632..68864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704518.1
Preferred nameDHH1
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K12614
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
GOsGO:0000288,GO:0000290,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006448,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010558,GO:0010603,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016032,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017148,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033043,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045182,GO:0045900,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0090304,GO:0097159,GO:0098552,GO:0098562,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902115,GO:1990904,GO:2000112,GO:2000113
Evalue7.38e-233
EggNOG OGsCOG0513@1|root,KOG0326@2759|Eukaryota
EC3.6.4.13
Descriptioncytoplasmic mRNA processing body assembly
COG categoryJKL
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9355Ggra9355Gracilaria gracilis GNS1m malegenetig00000883_pilon 67632..68864 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9355.t1.start1Ggra9355.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 67632..67634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9355.t1.CDS1Ggra9355.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 67632..68864 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9355.t1.exon1Ggra9355.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 67632..68864 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9355.t1.stop1Ggra9355.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 68862..68864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9355.t1Ggra9355.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 67632..68864 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9355.t1 ID=Ggra9355.t1|Name=Ggra9355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp
MTTAPVPDDWRSLVKPPPKDTRIRTTDVTATKGNEFEDYYLKRELLMGIY
EMGFEQPSPIQEAAIPVSLAGRDILARAKNGTGKTGAYLIPILERVDLKQ
TVASALVLVPTRELALQTAQVCKRLARHIDGLQVMVSTGGTSLKDDIMRF
YQPVHVLVATPGRVLDMARKNVCKLNRCSMLVMDEADKLLSPEFSHVIEQ
IIGNFMPGDRQISLFSATFPVAVKGFRDRFLRKPYEINLMDELTLQGITQ
YYAFVEESKKVHCLNTLFSKLQINQSIIFCNSVNRVELLARKITELGYSC
FYIHARMPQEQRNRVFHDFRSGACRNLVSSDLFTRGIDIQAVNVVINFDF
PKSSETYLHRVGRSGRFGHRGLAVSLITYEDRFNLYRIEQELDTEISPIP
PLVDKALYCA*
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spliced messenger RNA

>Ggra9355.t1 ID=Ggra9355.t1|Name=Ggra9355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000883_pilon:67632..68864+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACTGCACCCGTGCCCGATGACTGGCGCTCGCTCGTTAAGCCGCC
TCCGAAAGACACTCGTATCCGAACCACCGATGTCACCGCCACCAAAGGCA
ACGAGTTCGAAGACTATTATCTCAAGCGCGAGCTACTCATGGGTATCTAC
GAGATGGGCTTTGAACAACCGTCCCCCATTCAAGAGGCTGCCATTCCTGT
CTCGCTGGCCGGTCGCGATATTCTCGCGCGCGCCAAGAACGGCACCGGAA
AGACCGGTGCCTACCTAATCCCAATTCTTGAGCGCGTCGATCTCAAGCAG
ACCGTCGCCTCGGCGCTTGTGCTCGTGCCTACAAGAGAACTTGCGCTGCA
AACCGCCCAGGTTTGCAAGCGCTTGGCGCGCCACATCGATGGTCTGCAGG
TGATGGTTTCCACAGGTGGAACCAGTTTGAAGGACGACATTATGAGATTC
TATCAACCGGTTCATGTACTGGTCGCTACTCCTGGCAGGGTGCTGGATAT
GGCCAGAAAAAATGTCTGCAAGCTCAATCGATGTTCCATGTTGGTCATGG
ATGAAGCCGACAAGCTTCTTTCGCCGGAGTTTTCCCATGTCATTGAGCAG
ATCATCGGCAACTTCATGCCCGGCGATCGTCAGATCTCCTTGTTCTCTGC
AACTTTTCCTGTCGCTGTTAAGGGCTTTCGTGATCGATTTCTTCGAAAAC
CATATGAGATCAACCTCATGGATGAGTTAACCTTGCAGGGGATTACTCAG
TACTATGCCTTCGTCGAGGAGAGCAAGAAGGTGCATTGCTTGAACACGCT
CTTCTCAAAACTTCAAATCAACCAGAGTATCATCTTTTGTAACTCTGTGA
ATAGGGTGGAATTGCTTGCACGAAAGATCACCGAGCTTGGATATTCTTGT
TTCTACATCCATGCTCGAATGCCGCAGGAACAACGAAACCGCGTCTTCCA
CGACTTCAGATCAGGCGCGTGTCGAAATCTTGTCTCCTCAGATCTGTTCA
CAAGAGGGATCGATATTCAAGCAGTCAACGTCGTCATCAATTTCGACTTC
CCCAAATCGTCAGAGACTTACCTGCATCGGGTTGGTCGCTCGGGTCGCTT
TGGGCATCGTGGTCTGGCTGTTAGTCTGATCACGTATGAAGACAGATTCA
ATCTCTACCGGATTGAACAAGAGCTTGATACGGAGATTTCACCTATCCCC
CCACTCGTGGATAAGGCGCTGTACTGTGCGTGA
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protein sequence of Ggra9355.t1

>Ggra9355.t1 ID=Ggra9355.t1|Name=Ggra9355.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=411bp
MTTAPVPDDWRSLVKPPPKDTRIRTTDVTATKGNEFEDYYLKRELLMGIY
EMGFEQPSPIQEAAIPVSLAGRDILARAKNGTGKTGAYLIPILERVDLKQ
TVASALVLVPTRELALQTAQVCKRLARHIDGLQVMVSTGGTSLKDDIMRF
YQPVHVLVATPGRVLDMARKNVCKLNRCSMLVMDEADKLLSPEFSHVIEQ
IIGNFMPGDRQISLFSATFPVAVKGFRDRFLRKPYEINLMDELTLQGITQ
YYAFVEESKKVHCLNTLFSKLQINQSIIFCNSVNRVELLARKITELGYSC
FYIHARMPQEQRNRVFHDFRSGACRNLVSSDLFTRGIDIQAVNVVINFDF
PKSSETYLHRVGRSGRFGHRGLAVSLITYEDRFNLYRIEQELDTEISPIP
PLVDKALYCA*
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mRNA from alignment at tig00000883_pilon:67632..68864+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9355.t1 ID=Ggra9355.t1|Name=Ggra9355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000883_pilon:67632..68864+ (Gracilaria gracilis GNS1m male)
ATGACCACTGCACCCGTGCCCGATGACTGGCGCTCGCTCGTTAAGCCGCC
TCCGAAAGACACTCGTATCCGAACCACCGATGTCACCGCCACCAAAGGCA
ACGAGTTCGAAGACTATTATCTCAAGCGCGAGCTACTCATGGGTATCTAC
GAGATGGGCTTTGAACAACCGTCCCCCATTCAAGAGGCTGCCATTCCTGT
CTCGCTGGCCGGTCGCGATATTCTCGCGCGCGCCAAGAACGGCACCGGAA
AGACCGGTGCCTACCTAATCCCAATTCTTGAGCGCGTCGATCTCAAGCAG
ACCGTCGCCTCGGCGCTTGTGCTCGTGCCTACAAGAGAACTTGCGCTGCA
AACCGCCCAGGTTTGCAAGCGCTTGGCGCGCCACATCGATGGTCTGCAGG
TGATGGTTTCCACAGGTGGAACCAGTTTGAAGGACGACATTATGAGATTC
TATCAACCGGTTCATGTACTGGTCGCTACTCCTGGCAGGGTGCTGGATAT
GGCCAGAAAAAATGTCTGCAAGCTCAATCGATGTTCCATGTTGGTCATGG
ATGAAGCCGACAAGCTTCTTTCGCCGGAGTTTTCCCATGTCATTGAGCAG
ATCATCGGCAACTTCATGCCCGGCGATCGTCAGATCTCCTTGTTCTCTGC
AACTTTTCCTGTCGCTGTTAAGGGCTTTCGTGATCGATTTCTTCGAAAAC
CATATGAGATCAACCTCATGGATGAGTTAACCTTGCAGGGGATTACTCAG
TACTATGCCTTCGTCGAGGAGAGCAAGAAGGTGCATTGCTTGAACACGCT
CTTCTCAAAACTTCAAATCAACCAGAGTATCATCTTTTGTAACTCTGTGA
ATAGGGTGGAATTGCTTGCACGAAAGATCACCGAGCTTGGATATTCTTGT
TTCTACATCCATGCTCGAATGCCGCAGGAACAACGAAACCGCGTCTTCCA
CGACTTCAGATCAGGCGCGTGTCGAAATCTTGTCTCCTCAGATCTGTTCA
CAAGAGGGATCGATATTCAAGCAGTCAACGTCGTCATCAATTTCGACTTC
CCCAAATCGTCAGAGACTTACCTGCATCGGGTTGGTCGCTCGGGTCGCTT
TGGGCATCGTGGTCTGGCTGTTAGTCTGATCACGTATGAAGACAGATTCA
ATCTCTACCGGATTGAACAAGAGCTTGATACGGAGATTTCACCTATCCCC
CCACTCGTGGATAAGGCGCTGTACTGTGCGTGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:67632..68864+

>Ggra9355.t1 ID=Ggra9355.t1|Name=Ggra9355.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1233bp|location=Sequence derived from alignment at tig00000883_pilon:67632..68864+ (Gracilaria gracilis GNS1m male)
ATGACCACTGCACCCGTGCCCGATGACTGGCGCTCGCTCGTTAAGCCGCC
TCCGAAAGACACTCGTATCCGAACCACCGATGTCACCGCCACCAAAGGCA
ACGAGTTCGAAGACTATTATCTCAAGCGCGAGCTACTCATGGGTATCTAC
GAGATGGGCTTTGAACAACCGTCCCCCATTCAAGAGGCTGCCATTCCTGT
CTCGCTGGCCGGTCGCGATATTCTCGCGCGCGCCAAGAACGGCACCGGAA
AGACCGGTGCCTACCTAATCCCAATTCTTGAGCGCGTCGATCTCAAGCAG
ACCGTCGCCTCGGCGCTTGTGCTCGTGCCTACAAGAGAACTTGCGCTGCA
AACCGCCCAGGTTTGCAAGCGCTTGGCGCGCCACATCGATGGTCTGCAGG
TGATGGTTTCCACAGGTGGAACCAGTTTGAAGGACGACATTATGAGATTC
TATCAACCGGTTCATGTACTGGTCGCTACTCCTGGCAGGGTGCTGGATAT
GGCCAGAAAAAATGTCTGCAAGCTCAATCGATGTTCCATGTTGGTCATGG
ATGAAGCCGACAAGCTTCTTTCGCCGGAGTTTTCCCATGTCATTGAGCAG
ATCATCGGCAACTTCATGCCCGGCGATCGTCAGATCTCCTTGTTCTCTGC
AACTTTTCCTGTCGCTGTTAAGGGCTTTCGTGATCGATTTCTTCGAAAAC
CATATGAGATCAACCTCATGGATGAGTTAACCTTGCAGGGGATTACTCAG
TACTATGCCTTCGTCGAGGAGAGCAAGAAGGTGCATTGCTTGAACACGCT
CTTCTCAAAACTTCAAATCAACCAGAGTATCATCTTTTGTAACTCTGTGA
ATAGGGTGGAATTGCTTGCACGAAAGATCACCGAGCTTGGATATTCTTGT
TTCTACATCCATGCTCGAATGCCGCAGGAACAACGAAACCGCGTCTTCCA
CGACTTCAGATCAGGCGCGTGTCGAAATCTTGTCTCCTCAGATCTGTTCA
CAAGAGGGATCGATATTCAAGCAGTCAACGTCGTCATCAATTTCGACTTC
CCCAAATCGTCAGAGACTTACCTGCATCGGGTTGGTCGCTCGGGTCGCTT
TGGGCATCGTGGTCTGGCTGTTAGTCTGATCACGTATGAAGACAGATTCA
ATCTCTACCGGATTGAACAAGAGCTTGATACGGAGATTTCACCTATCCCC
CCACTCGTGGATAAGGCGCTGTACTGTGCGTGA
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