Ggra9410.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9410.t1
Unique NameGgra9410.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Homology
BLAST of Ggra9410.t1 vs. uniprot
Match: A0A2V3ILA7 (Vesicle transport v-SNARE 13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILA7_9FLOR)

HSP 1 Score: 301 bits (771), Expect = 7.790e-101
Identity = 161/233 (69.10%), Postives = 192/233 (82.40%), Query Frame = 0
Query:    1 MSFAQPALPPLESTFSDYHREFHATLTKANQSIQASAQRDPQQATQVLTDADQLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQRPGQGAPDVRIQMTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLYVRIFHTRS 233
            MSF Q ALPPL+STFSDYHREF+A L K+ Q+IQASA +D  Q +Q L DADQ I +AADL KTLE+E+QSQ L TRNKLRPYVT+ R ALSDARKA+RAAR+  SQRR+L +RD+LLQR G    DVRI M+  TA IEK +E+I DSRRHIAETELVGASILEDL SQRNTISRAR N+GNMS+GL QSD++LNTM RRA+ NRI+VY++L  I I+CLAV+YVR+FH+ +
Sbjct:    1 MSFKQTALPPLDSTFSDYHREFYAALNKSQQAIQASANQDLNQVSQCLNDADQHITEAADLFKTLEMESQSQDLTTRNKLRPYVTEGRTALSDARKALRAARVATSQRRDLVNRDELLQRGG----DVRIDMSDTTAQIEKSNEVITDSRRHIAETELVGASILEDLLSQRNTISRARQNVGNMSTGLDQSDTILNTMQRRALVNRILVYIVLVAIGISCLAVIYVRMFHSNT 229          
BLAST of Ggra9410.t1 vs. uniprot
Match: R7QM93 (Putative Vesicle transport v-SNARE n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM93_CHOCR)

HSP 1 Score: 213 bits (543), Expect = 4.040e-66
Identity = 119/241 (49.38%), Postives = 170/241 (70.54%), Query Frame = 0
Query:    1 MSFAQPA-----LPPLESTFSDYHREFHATLTKANQSIQAS---AQRDPQQATQVLTDADQLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQRPGQGAPDVRIQMTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLYVRIFHTRS 233
            MSFA+P      L P  S FSDYH+EF + L  + +SI  +   ++  P  +   L +AD+ I +A+DLLK++ELEAQ+ P D+R  LR +V  +R+ +S  R+ +RAARI ++QR+E  +RD+LL        + R +MT  T  +EKGSE+I  SRR+IAETE +GASILEDLQ+QRNTI RAR NLG +  GL+QS S+++TM RRA+ N+I+VY+ILAIIA+AC+A+++VR+FH + 
Sbjct:    1 MSFAKPEATIIDLGPASSVFSDYHKEFTSLLASSAESISTAKSVSESSPADSNSALNEADRDIGEASDLLKSMELEAQAAPSDSRISLRSHVAKARDEVSRMRQELRAARIALAQRKEELNRDELLGGYSHSDAEDRSRMTDTTERLEKGSEIITGSRRNIAETEAIGASILEDLQNQRNTIMRARQNLGGVDGGLEQSGSIISTMQRRAIMNKIIVYIILAIIAVACVAIVFVRVFHAKG 241          
BLAST of Ggra9410.t1 vs. uniprot
Match: F1L828 (Vesicle transport through interaction with t-SNAREs 1A n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L828_ASCSU)

HSP 1 Score: 88.2 bits (217), Expect = 1.080e-17
Identity = 64/219 (29.22%), Postives = 109/219 (49.77%), Query Frame = 0
Query:   13 STFSDYHREFHATLTKANQSIQASAQRDPQQATQVLTDADQLIADAADLLKTLELE------AQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQRPGQGAPDVRIQMTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLY 225
            S F D+ +++     +    I   A  +  +    +    +L+ D   LL+ +EL       A S+      ++R Y  D +   S+  KA++  +       E ADRD+L+    + + D + Q+  NT  +E+ S  + D+ R + ETE +GA +L DL SQR TISRAR  L    S L +S  VL+ M RR + NR+++ VI  ++  + + ++Y
Sbjct:    4 SLFGDFEQQYSVQTAEITSRIGGLANLEKHERLAGIQHVQRLLVDVESLLEQMELTVRELDPASSERSKYDLRVRSYRNDKKQLDSELDKAIQRLK-------ENADRDELMAFDNEISLDQQDQLIENTERLERTSRRLQDTYRMVVETEQIGAEVLGDLSSQRETISRARDRLREADSDLNRSRKVLSQMIRRIIQNRLLLLVIAVLLLFSLVFIIY 215          
BLAST of Ggra9410.t1 vs. uniprot
Match: A0A7S3RC76 (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RC76_9SPIT)

HSP 1 Score: 86.3 bits (212), Expect = 6.800e-17
Identity = 66/214 (30.84%), Postives = 108/214 (50.47%), Query Frame = 0
Query:   15 FSDYHREFHATLTKANQSIQASAQRDP-QQATQVLTDADQLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQRPGQGAPDVRIQMTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLYVR 227
            F+ Y  EF     +AN  +    Q  P  +   V   A+  +  AAD++  LE+EA         + +  +   R+ LS AR + R A +   QR EL  R +  QR    A     ++   T+ +++G+E +  + +   ETE VGASIL DL  QR T+ + R  L N + GL +S  +L TM +RA AN+ ++  I+  + +  LA++Y++
Sbjct:    2 FASYESEFTRACIEANAQVDTLEQLLPGSERDTVRRQAESAVEAAADVVAQLEMEAGPAEKPRVRECKASLAQLRSKLSAARSSNRVAEL---QREELLRRSEEPQR--MEAEQQHARLLETTSRLQRGTEKLRHACQVAIETEAVGASILTDLDQQRMTLEQTRERLRNANRGLAKSKKLLQTMTKRAWANKALMVGIIFFLMLMILAIIYLK 210          
BLAST of Ggra9410.t1 vs. uniprot
Match: A0A1S3HIM2 (vesicle transport through interaction with t-SNAREs homolog 1A n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HIM2_LINUN)

HSP 1 Score: 85.5 bits (210), Expect = 1.110e-16
Identity = 52/202 (25.74%), Postives = 106/202 (52.48%), Query Frame = 0
Query:   11 LESTFSDYHREFHATLTKANQSIQASAQRDPQQATQVLTDADQLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQRPGQGAPDVRIQMTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVI 212
            ++S    Y ++F +        I        ++   ++ + ++L+ +  +LL+ ++LE +S P+  R K +  +   ++ L+   K ++ ++I  S    +  R++LL    Q + D R ++  NT  +E+ S+ +    + + ETE +GA++L+DL SQR TI R+R  L    + L +S  +L+ M RR + NR ++ V+
Sbjct:    1 MDSLMESYEQQFGSLTADITSKIGKIPNVSGKEKVTIIENVEKLMDETRELLEQMDLEVRSLPVTERQKYQIRLKSYKSELTQLEKNLKKSKIAFSD--HVHAREELLGDETQNSEDQRTRLLDNTERLERSSKRLEHGYQTVLETEQIGAAVLDDLHSQRQTIQRSRERLRETDAALGKSSRILSGMMRRIIQNRAVLVVV 200          
BLAST of Ggra9410.t1 vs. uniprot
Match: A0A8J5MR24 (Vesicle transport through interaction with t-SNAREs 1A-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MR24_HOMAM)

HSP 1 Score: 85.5 bits (210), Expect = 1.200e-16
Identity = 66/212 (31.13%), Postives = 104/212 (49.06%), Query Frame = 0
Query:   17 DYHREFHATLTKANQSIQASAQRDPQQATQVLTDADQLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQ--RPGQGAPDVRIQ-MTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLY 225
            ++ ++F          I     R+  +   V+ D ++L+ +A +LL+ ++LE +      R KL   +   +  L   R     +RI  S   E + R +LL+  + G    + + Q +  NT  +E+ S  I    +   ETE +GA IL DL SQR TIS AR  L    + L QS  VLNTM RR + NR ++Y +L I+AI  +  +Y
Sbjct:    7 EFEQQFATVTADITSKICILPSREGAERRTVIHDVEKLVEEAKELLERMDLEVRDMEPVQREKLGGRLKSYQVELK--RLEGEYSRIKSSMSNEASMRSELLEDCQAGMSVGEEQQQSLLDNTESLERTSTRITQGSKIAVETEHIGAQILNDLYSQRQTISHARERLRETDADLDQSSRVLNTMLRRVLQNRFILYTVLGIVAIVIIFAIY 216          
BLAST of Ggra9410.t1 vs. uniprot
Match: A0A7S4F1K3 (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F1K3_CHRCT)

HSP 1 Score: 86.3 bits (212), Expect = 2.030e-16
Identity = 69/224 (30.80%), Postives = 115/224 (51.34%), Query Frame = 0
Query:   16 SDYHREFHATLTKANQSIQASAQRDPQQATQVLTDAD-QLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQRPGQGAPDV--------RIQMTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLYVRIFH 230
            S Y  EF      AN+ ++   +  P +A      A  + I  AA+L++ LEL+A S P   R  L   V + +  +S  R   +AA  + +   + A R +LL     GA D         R ++ + T  +++GS+ +  + +   ETE VGASI+ DL+SQR+T+  AR  L   +SGL +S  +L  M RRA+AN++++ VI+ ++        Y+ +F+
Sbjct:   56 SAYEAEFRQCTHHANEELEKMKELIPSEAKTTAAKAVLEAIESAAELVEQLELQATSAPSSARGPLVAKVREYKATVSRLRADYKAASSNSAA--QDAARAELLA----GASDAQRAEAETQRARLLATTERLQRGSDTLRGACKVAIETEAVGASIMSDLESQRHTLESARGRLAAANSGLARSKKLLKGMGRRALANKLLMMVIIGVLVXXXXXXXYLSLFY 273          
BLAST of Ggra9410.t1 vs. uniprot
Match: A0A0M0JSG1 (Vesicle transport v-snare 13-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JSG1_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 4.360e-16
Identity = 67/221 (30.32%), Postives = 118/221 (53.39%), Query Frame = 0
Query:   15 FSDYHREFHATLTKANQSIQASAQRDP---QQATQVLTDADQLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQRPGQGAPDVRIQMTSNTAHIEKGSEMINDSRRHIA-------ETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLY 225
            F  Y +E+  T  KA   I+   Q  P   ++AT  +  A + I  A ++++ +E+EA+S   + + +L     D + +++D R  + AA+   S + E + RD+LL+      P +R++  +  + +   +E +N++   I        ETE +G SIL DL  QR TI+ AR  L    SGL +S  +L  M RRA+ N++++YVI+A + I  + ++Y
Sbjct:    2 FDHYEKEYLGTAKKATTDIELIDQLLPGVEREAT--IKRAGEGITAAEEIVQGMEMEARSMTGEAKQQLAAKAKDYKKSIADMRAKLNAAKT--SGKAEKSARDELLR---SFDPTLRMEADNQRSRLMATNERLNNASDKIRGAVQTALETEKIGESILSDLADQRATIAHARGTLAGTMSGLDKSKKMLQGMGRRALKNKVLMYVIIATLIIMIMFIVY 215          
BLAST of Ggra9410.t1 vs. uniprot
Match: R1CZN5 (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZN5_EMIHU)

HSP 1 Score: 82.8 bits (203), Expect = 1.460e-15
Identity = 62/218 (28.44%), Postives = 109/218 (50.00%), Query Frame = 0
Query:   13 STFSDYHREFHATLTKANQSIQASAQRDPQQATQV-LTDADQLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRAARIDMSQRRELADRDQLLQRPGQGAPDVRIQMTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLYVRIF 229
            S F+ Y  EF      AN  I    +  P       + +A   +  AAD++  LE+EA         + +  +++ R+ LS AR   RAA +   Q    AD    ++   Q A     ++   T+ +++G++ +  + +   ETE VG SIL DL  QR T+ + R  L   + GL++S  +L +M +RA AN++++  I+A + +  +A+LY++ F
Sbjct:    2 SEFASYESEFTHACMDANSKISTLERLAPGSGRDAAVKEAQAAVDSAADVVSRLEMEAGPSDRGRVRECKSSLSELRSKLSVARSNNRAAELAREQLLASADAPARMEAEAQHA-----RLLETTSRMQRGTDKLRAACQVAVETEAVGVSILGDLDQQRMTLEQTRERLRTANRGLERSKKLLQSMTKRAAANKMLMIGIIAFLCLMIVAILYLKFF 214          
BLAST of Ggra9410.t1 vs. uniprot
Match: C1MQ00 (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MQ00_MICPC)

HSP 1 Score: 82.8 bits (203), Expect = 1.540e-15
Identity = 68/226 (30.09%), Postives = 111/226 (49.12%), Query Frame = 0
Query:   15 FSDYHREFHATLTKANQSIQASAQRDPQQATQVLTDADQLIADAADLLKTLELEAQSQPLDTRN-----KLRPYVTDSRNALSDARKAMRA-----ARIDMSQRRELADRDQLLQRPGQGAP---DVRIQMTSNTAHIEKGSEMINDSRRHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHRRAMANRIMVYVILAIIAIACLAVLYVR 227
            F  Y REF       N++  +    D    +Q + + D  +A+A  L++ ++LEA+S    T       KLR Y ++ +    +++ A RA     AR  +    EL D          GAP     R +M  +TA ++   + I + ++ + ETE +G SIL+DL  QR TIS AR N+      + +S  +L  M RRA AN++++Y I+A++  A   V Y +
Sbjct:    5 FDGYEREFLEYTASINRATASLPSLDGAAKSQKIAEVDAEVAEAEALVRRMDLEARSLRDPTVKTPMLAKLRDYKSELQRLKRESQVAARAISSSNARSQLLAGAELDD---------MGAPTSSSQRERMLQSTARLDSTGDRIREGKKSLLETEELGVSILQDLHRQRETISSARENVHGADDNIARSRKILAAMGRRAAANKLLLYGIIAMLFFAICFVAYFK 221          
The following BLAST results are available for this feature:
BLAST of Ggra9410.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILA77.790e-10169.10Vesicle transport v-SNARE 13 n=1 Tax=Gracilariopsi... [more]
R7QM934.040e-6649.38Putative Vesicle transport v-SNARE n=1 Tax=Chondru... [more]
F1L8281.080e-1729.22Vesicle transport through interaction with t-SNARE... [more]
A0A7S3RC766.800e-1730.84Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A1S3HIM21.110e-1625.74vesicle transport through interaction with t-SNARE... [more]
A0A8J5MR241.200e-1631.13Vesicle transport through interaction with t-SNARE... [more]
A0A7S4F1K32.030e-1630.80Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0M0JSG14.360e-1630.32Vesicle transport v-snare 13-like protein n=1 Tax=... [more]
R1CZN51.460e-1528.44Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
C1MQ001.540e-1530.09Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..68
NoneNo IPR availablePFAMPF12352V-SNARE_Ccoord: 138..201
e-value: 6.8E-15
score: 55.1
NoneNo IPR availableGENE3D1.20.5.110coord: 127..206
e-value: 1.8E-18
score: 68.5
NoneNo IPR availablePANTHERPTHR21230VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATEDcoord: 14..228
NoneNo IPR availablePANTHERPTHR21230:SF26VESICLE TRANSPORT V-SNARE 13coord: 14..228
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 207..228
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 229..236
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..206
NoneNo IPR availableCDDcd15862SNARE_Vti1coord: 136..197
e-value: 5.35555E-14
score: 62.5464
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 140..198
NoneNo IPR availableTMHMMTMhelixcoord: 207..229
IPR007705Vesicle transport v-SNARE, N-terminalPFAMPF05008V-SNAREcoord: 24..97
e-value: 1.6E-5
score: 25.2
IPR038407Vesicle transport v-SNARE, N-terminal domain superfamilyGENE3D1.20.58.400coord: 12..109
e-value: 3.1E-13
score: 51.7
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 17..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:496797..497507 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9410.t1Ggra9410.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 496797..497507 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9410.t1 ID=Ggra9410.t1|Name=Ggra9410.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MSFAQPALPPLESTFSDYHREFHATLTKANQSIQASAQRDPQQATQVLTD
ADQLIADAADLLKTLELEAQSQPLDTRNKLRPYVTDSRNALSDARKAMRA
ARIDMSQRRELADRDQLLQRPGQGAPDVRIQMTSNTAHIEKGSEMINDSR
RHIAETELVGASILEDLQSQRNTISRARHNLGNMSSGLQQSDSVLNTMHR
RAMANRIMVYVILAIIAIACLAVLYVRIFHTRSRTA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007705Vesicle_trsprt_v-SNARE_N
IPR038407v-SNARE_N_sf
IPR010989SNARE