Ggra9401.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9401.t1
Unique NameGgra9401.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:358789..359859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1234409.C683_0825
PFAMsEndonuclea_NS_2
Max annot lvl91061|Bacilli
KEGG koko:K15051
Evalue4.47e-07
EggNOG OGsCOG2169@1|root,COG2169@2|Bacteria,1TR37@1239|Firmicutes,4HJ4Q@91061|Bacilli,4B6AG@81852|Enterococcaceae
DescriptionDNA/RNA non-specific endonuclease
COG categoryF
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9401Ggra9401Gracilaria gracilis GNS1m malegenetig00000883_pilon 358789..359859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9401.t1.stop1Ggra9401.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 358789..358791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9401.t1.CDS1Ggra9401.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 358789..359859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9401.t1.exon1Ggra9401.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 358789..359859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9401.t1.start1Ggra9401.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 359857..359859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9401.t1Ggra9401.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 358789..359859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9401.t1 ID=Ggra9401.t1|Name=Ggra9401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp
MFAGVLQKISICLALAVLYTAIVLYAAAVVTKVKHRDLDESQTRVNNVRS
LFQPTLVPPKSNDGFERRYPVSHDDYRYQECVERNGVTLAYGPVLNPAAD
FREWKASSVQATFRAVKSRARENLAGCGKMAYNYDRPPGWLGPRTKCTRG
HLLGKQLGGNGLNTRNIVMLFSSANSPVMSGWENIIAEVREKLMTNGSRN
AVLDYVVKAEYCAGRETPAAIWMETWFAASENAERSEWLKILVPNEQNVR
AYMYMDNSLRLGFGQLEINPNHNVITSERLARSSRPERDGDNWKKYPQRL
VELAYRGTKRTRKWRKRQELTMVAVQSLTEDSPCKWKLPTSARKDAQTRH
GNEKAT*
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spliced messenger RNA

>Ggra9401.t1 ID=Ggra9401.t1|Name=Ggra9401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000883_pilon:358789..359859- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCTGGTGTGTTGCAAAAGATATCCATCTGCCTGGCATTGGCAGT
CCTTTACACCGCTATTGTGCTGTACGCTGCTGCAGTAGTGACCAAGGTGA
AACATCGAGACTTAGACGAGAGTCAAACACGCGTTAATAACGTTCGATCT
CTGTTCCAACCTACGCTAGTTCCTCCGAAAAGTAACGATGGCTTTGAAAG
GAGGTATCCAGTAAGTCACGATGACTACAGATACCAGGAGTGTGTCGAGC
GAAACGGGGTCACTTTGGCCTACGGGCCTGTTCTGAACCCGGCAGCCGAC
TTTCGGGAATGGAAAGCCTCGTCCGTACAGGCCACTTTTCGGGCGGTGAA
GAGCAGAGCACGTGAAAACCTGGCAGGATGCGGGAAAATGGCATACAATT
ACGATCGGCCTCCAGGATGGCTCGGACCCCGCACGAAATGTACCAGAGGC
CACTTGCTTGGCAAGCAGCTGGGTGGAAATGGTCTCAACACGCGTAACAT
TGTCATGCTGTTCAGCAGTGCAAACAGCCCGGTGATGTCCGGGTGGGAGA
ACATCATCGCCGAAGTGAGAGAAAAGTTGATGACCAACGGCTCAAGAAAT
GCCGTGCTCGATTACGTGGTGAAGGCAGAATACTGCGCGGGGAGGGAGAC
GCCGGCGGCCATTTGGATGGAGACGTGGTTCGCAGCGAGCGAGAATGCTG
AGCGGTCCGAATGGCTGAAGATTCTAGTGCCTAATGAGCAAAACGTGAGG
GCATACATGTACATGGATAACTCTCTGAGATTGGGGTTCGGGCAACTGGA
GATTAACCCAAACCACAATGTCATCACCAGCGAGCGCCTTGCGCGCAGTT
CAAGACCAGAGCGCGATGGTGACAACTGGAAGAAGTACCCTCAAAGGCTG
GTGGAACTTGCATATCGTGGCACCAAACGAACAAGAAAGTGGCGAAAGAG
ACAGGAATTGACGATGGTTGCGGTTCAATCGCTCACGGAGGATTCTCCGT
GCAAATGGAAATTGCCTACCAGCGCCAGGAAGGACGCTCAAACTCGACAT
GGAAATGAAAAAGCCACATAG
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protein sequence of Ggra9401.t1

>Ggra9401.t1 ID=Ggra9401.t1|Name=Ggra9401.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MFAGVLQKISICLALAVLYTAIVLYAAAVVTKVKHRDLDESQTRVNNVRS
LFQPTLVPPKSNDGFERRYPVSHDDYRYQECVERNGVTLAYGPVLNPAAD
FREWKASSVQATFRAVKSRARENLAGCGKMAYNYDRPPGWLGPRTKCTRG
HLLGKQLGGNGLNTRNIVMLFSSANSPVMSGWENIIAEVREKLMTNGSRN
AVLDYVVKAEYCAGRETPAAIWMETWFAASENAERSEWLKILVPNEQNVR
AYMYMDNSLRLGFGQLEINPNHNVITSERLARSSRPERDGDNWKKYPQRL
VELAYRGTKRTRKWRKRQELTMVAVQSLTEDSPCKWKLPTSARKDAQTRH
GNEKAT*
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mRNA from alignment at tig00000883_pilon:358789..359859-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9401.t1 ID=Ggra9401.t1|Name=Ggra9401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000883_pilon:358789..359859- (Gracilaria gracilis GNS1m male)
ATGTTCGCTGGTGTGTTGCAAAAGATATCCATCTGCCTGGCATTGGCAGT
CCTTTACACCGCTATTGTGCTGTACGCTGCTGCAGTAGTGACCAAGGTGA
AACATCGAGACTTAGACGAGAGTCAAACACGCGTTAATAACGTTCGATCT
CTGTTCCAACCTACGCTAGTTCCTCCGAAAAGTAACGATGGCTTTGAAAG
GAGGTATCCAGTAAGTCACGATGACTACAGATACCAGGAGTGTGTCGAGC
GAAACGGGGTCACTTTGGCCTACGGGCCTGTTCTGAACCCGGCAGCCGAC
TTTCGGGAATGGAAAGCCTCGTCCGTACAGGCCACTTTTCGGGCGGTGAA
GAGCAGAGCACGTGAAAACCTGGCAGGATGCGGGAAAATGGCATACAATT
ACGATCGGCCTCCAGGATGGCTCGGACCCCGCACGAAATGTACCAGAGGC
CACTTGCTTGGCAAGCAGCTGGGTGGAAATGGTCTCAACACGCGTAACAT
TGTCATGCTGTTCAGCAGTGCAAACAGCCCGGTGATGTCCGGGTGGGAGA
ACATCATCGCCGAAGTGAGAGAAAAGTTGATGACCAACGGCTCAAGAAAT
GCCGTGCTCGATTACGTGGTGAAGGCAGAATACTGCGCGGGGAGGGAGAC
GCCGGCGGCCATTTGGATGGAGACGTGGTTCGCAGCGAGCGAGAATGCTG
AGCGGTCCGAATGGCTGAAGATTCTAGTGCCTAATGAGCAAAACGTGAGG
GCATACATGTACATGGATAACTCTCTGAGATTGGGGTTCGGGCAACTGGA
GATTAACCCAAACCACAATGTCATCACCAGCGAGCGCCTTGCGCGCAGTT
CAAGACCAGAGCGCGATGGTGACAACTGGAAGAAGTACCCTCAAAGGCTG
GTGGAACTTGCATATCGTGGCACCAAACGAACAAGAAAGTGGCGAAAGAG
ACAGGAATTGACGATGGTTGCGGTTCAATCGCTCACGGAGGATTCTCCGT
GCAAATGGAAATTGCCTACCAGCGCCAGGAAGGACGCTCAAACTCGACAT
GGAAATGAAAAAGCCACATAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:358789..359859-

>Ggra9401.t1 ID=Ggra9401.t1|Name=Ggra9401.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00000883_pilon:358789..359859- (Gracilaria gracilis GNS1m male)
ATGTTCGCTGGTGTGTTGCAAAAGATATCCATCTGCCTGGCATTGGCAGT
CCTTTACACCGCTATTGTGCTGTACGCTGCTGCAGTAGTGACCAAGGTGA
AACATCGAGACTTAGACGAGAGTCAAACACGCGTTAATAACGTTCGATCT
CTGTTCCAACCTACGCTAGTTCCTCCGAAAAGTAACGATGGCTTTGAAAG
GAGGTATCCAGTAAGTCACGATGACTACAGATACCAGGAGTGTGTCGAGC
GAAACGGGGTCACTTTGGCCTACGGGCCTGTTCTGAACCCGGCAGCCGAC
TTTCGGGAATGGAAAGCCTCGTCCGTACAGGCCACTTTTCGGGCGGTGAA
GAGCAGAGCACGTGAAAACCTGGCAGGATGCGGGAAAATGGCATACAATT
ACGATCGGCCTCCAGGATGGCTCGGACCCCGCACGAAATGTACCAGAGGC
CACTTGCTTGGCAAGCAGCTGGGTGGAAATGGTCTCAACACGCGTAACAT
TGTCATGCTGTTCAGCAGTGCAAACAGCCCGGTGATGTCCGGGTGGGAGA
ACATCATCGCCGAAGTGAGAGAAAAGTTGATGACCAACGGCTCAAGAAAT
GCCGTGCTCGATTACGTGGTGAAGGCAGAATACTGCGCGGGGAGGGAGAC
GCCGGCGGCCATTTGGATGGAGACGTGGTTCGCAGCGAGCGAGAATGCTG
AGCGGTCCGAATGGCTGAAGATTCTAGTGCCTAATGAGCAAAACGTGAGG
GCATACATGTACATGGATAACTCTCTGAGATTGGGGTTCGGGCAACTGGA
GATTAACCCAAACCACAATGTCATCACCAGCGAGCGCCTTGCGCGCAGTT
CAAGACCAGAGCGCGATGGTGACAACTGGAAGAAGTACCCTCAAAGGCTG
GTGGAACTTGCATATCGTGGCACCAAACGAACAAGAAAGTGGCGAAAGAG
ACAGGAATTGACGATGGTTGCGGTTCAATCGCTCACGGAGGATTCTCCGT
GCAAATGGAAATTGCCTACCAGCGCCAGGAAGGACGCTCAAACTCGACAT
GGAAATGAAAAAGCCACATAG
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