Ggra9345.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9345.t1
Unique Name	Ggra9345.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:40920..41783 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3827.XP_004502770.1
Max annot lvl	35493\|Streptophyta
Evalue	2.03e-09
EggNOG OGs	2BQ8T@1\|root,2S1TM@2759\|Eukaryota,37V8M@33090\|Viridiplantae,3GJTA@35493\|Streptophyta,4JUQ9@91835\|fabids

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9345	Ggra9345	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 40920..41783 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9345.t1.start1	Ggra9345.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 40920..40922 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9345.t1.CDS1	Ggra9345.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 40920..41783 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9345.t1.exon1	Ggra9345.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 40920..41783 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9345.t1.stop1	Ggra9345.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 41781..41783 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9345.t1	Ggra9345.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 40920..41783 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:40920..41783+
coding sequence from alignment at tig00000883_pilon:40920..41783+

mRNA sequence

>Ggra9345.t1 ID=Ggra9345.t1|Name=Ggra9345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MDNEVIVLSDNSDDEVTAVMNPAATQAPNPAKEGQNPPLLPGIVVAKTQP
TEIPMPMPVPKDDFGDDEIEITSVTNTKSREGKNVSQVASETRTELECVG
ERQGIRALRDYPHFRFDCVTIPFKKARSRVKETYCDLCYCYICDVLASQC
TKWSMHCKVTRAGKYQKERDAILDERKRRELTTDEGRCTMLKRIMRPQFV
NESEYEQFVELPNEDEEFEDDGCPHSGSEDDQASMPIGFDHGHVMLSLQR
VRLGGKGSKLERMVDLNPETESYVTFQRGASGYEDLL*

spliced messenger RNA

>Ggra9345.t1 ID=Ggra9345.t1|Name=Ggra9345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000883_pilon:40920..41783+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACGAAGTCATTGTGTTGTCTGACAATTCAGACGATGAGGTAAC
AGCTGTGATGAACCCTGCGGCTACCCAGGCGCCAAATCCTGCGAAAGAAG
GGCAGAACCCGCCCTTGCTTCCTGGGATAGTGGTAGCCAAAACGCAACCT
ACCGAGATTCCTATGCCAATGCCAGTACCGAAGGATGACTTCGGAGATGA
CGAAATAGAAATCACAAGTGTGACAAACACCAAATCAAGAGAAGGAAAAA
ACGTCTCTCAGGTGGCTTCTGAAACACGCACAGAGCTGGAGTGCGTGGGT
GAGCGACAAGGTATACGCGCGTTGCGTGATTACCCACACTTTCGGTTCGA
TTGTGTTACAATTCCATTCAAGAAAGCTCGTTCTCGTGTAAAGGAGACTT
ATTGTGATCTCTGTTATTGTTATATTTGTGATGTTCTGGCTTCTCAATGC
ACGAAATGGAGCATGCATTGTAAGGTTACTAGGGCCGGAAAATATCAGAA
AGAACGGGACGCTATATTGGACGAACGAAAACGAAGGGAGTTAACTACGG
ATGAAGGACGATGTACCATGTTGAAACGAATCATGAGACCACAGTTTGTG
AATGAAAGTGAATATGAACAGTTTGTTGAACTGCCGAATGAGGATGAGGA
ATTTGAAGACGATGGATGTCCACATAGTGGTAGTGAAGACGATCAAGCTT
CGATGCCGATTGGGTTTGATCACGGTCATGTAATGCTGTCTCTTCAACGC
GTTCGGCTCGGTGGTAAGGGATCAAAGTTGGAGCGTATGGTCGATTTAAA
CCCGGAGACAGAGAGTTATGTTACTTTTCAACGCGGCGCGTCTGGTTACG
AAGATCTGCTCTAA

protein sequence of Ggra9345.t1

>Ggra9345.t1 ID=Ggra9345.t1|Name=Ggra9345.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MDNEVIVLSDNSDDEVTAVMNPAATQAPNPAKEGQNPPLLPGIVVAKTQP
TEIPMPMPVPKDDFGDDEIEITSVTNTKSREGKNVSQVASETRTELECVG
ERQGIRALRDYPHFRFDCVTIPFKKARSRVKETYCDLCYCYICDVLASQC
TKWSMHCKVTRAGKYQKERDAILDERKRRELTTDEGRCTMLKRIMRPQFV
NESEYEQFVELPNEDEEFEDDGCPHSGSEDDQASMPIGFDHGHVMLSLQR
VRLGGKGSKLERMVDLNPETESYVTFQRGASGYEDLL*

mRNA from alignment at tig00000883_pilon:40920..41783+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9345.t1 ID=Ggra9345.t1|Name=Ggra9345.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000883_pilon:40920..41783+ (Gracilaria gracilis GNS1m male)
ATGGACAACGAAGTCATTGTGTTGTCTGACAATTCAGACGATGAGGTAAC
AGCTGTGATGAACCCTGCGGCTACCCAGGCGCCAAATCCTGCGAAAGAAG
GGCAGAACCCGCCCTTGCTTCCTGGGATAGTGGTAGCCAAAACGCAACCT
ACCGAGATTCCTATGCCAATGCCAGTACCGAAGGATGACTTCGGAGATGA
CGAAATAGAAATCACAAGTGTGACAAACACCAAATCAAGAGAAGGAAAAA
ACGTCTCTCAGGTGGCTTCTGAAACACGCACAGAGCTGGAGTGCGTGGGT
GAGCGACAAGGTATACGCGCGTTGCGTGATTACCCACACTTTCGGTTCGA
TTGTGTTACAATTCCATTCAAGAAAGCTCGTTCTCGTGTAAAGGAGACTT
ATTGTGATCTCTGTTATTGTTATATTTGTGATGTTCTGGCTTCTCAATGC
ACGAAATGGAGCATGCATTGTAAGGTTACTAGGGCCGGAAAATATCAGAA
AGAACGGGACGCTATATTGGACGAACGAAAACGAAGGGAGTTAACTACGG
ATGAAGGACGATGTACCATGTTGAAACGAATCATGAGACCACAGTTTGTG
AATGAAAGTGAATATGAACAGTTTGTTGAACTGCCGAATGAGGATGAGGA
ATTTGAAGACGATGGATGTCCACATAGTGGTAGTGAAGACGATCAAGCTT
CGATGCCGATTGGGTTTGATCACGGTCATGTAATGCTGTCTCTTCAACGC
GTTCGGCTCGGTGGTAAGGGATCAAAGTTGGAGCGTATGGTCGATTTAAA
CCCGGAGACAGAGAGTTATGTTACTTTTCAACGCGGCGCGTCTGGTTACG
AAGATCTGCTCTAA

Coding sequence (CDS) from alignment at tig00000883_pilon:40920..41783+

>Ggra9345.t1 ID=Ggra9345.t1|Name=Ggra9345.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000883_pilon:40920..41783+ (Gracilaria gracilis GNS1m male)
ATGGACAACGAAGTCATTGTGTTGTCTGACAATTCAGACGATGAGGTAAC
AGCTGTGATGAACCCTGCGGCTACCCAGGCGCCAAATCCTGCGAAAGAAG
GGCAGAACCCGCCCTTGCTTCCTGGGATAGTGGTAGCCAAAACGCAACCT
ACCGAGATTCCTATGCCAATGCCAGTACCGAAGGATGACTTCGGAGATGA
CGAAATAGAAATCACAAGTGTGACAAACACCAAATCAAGAGAAGGAAAAA
ACGTCTCTCAGGTGGCTTCTGAAACACGCACAGAGCTGGAGTGCGTGGGT
GAGCGACAAGGTATACGCGCGTTGCGTGATTACCCACACTTTCGGTTCGA
TTGTGTTACAATTCCATTCAAGAAAGCTCGTTCTCGTGTAAAGGAGACTT
ATTGTGATCTCTGTTATTGTTATATTTGTGATGTTCTGGCTTCTCAATGC
ACGAAATGGAGCATGCATTGTAAGGTTACTAGGGCCGGAAAATATCAGAA
AGAACGGGACGCTATATTGGACGAACGAAAACGAAGGGAGTTAACTACGG
ATGAAGGACGATGTACCATGTTGAAACGAATCATGAGACCACAGTTTGTG
AATGAAAGTGAATATGAACAGTTTGTTGAACTGCCGAATGAGGATGAGGA
ATTTGAAGACGATGGATGTCCACATAGTGGTAGTGAAGACGATCAAGCTT
CGATGCCGATTGGGTTTGATCACGGTCATGTAATGCTGTCTCTTCAACGC
GTTCGGCTCGGTGGTAAGGGATCAAAGTTGGAGCGTATGGTCGATTTAAA
CCCGGAGACAGAGAGTTATGTTACTTTTCAACGCGGCGCGTCTGGTTACG
AAGATCTGCTCTAA