Ggra1009.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1009.t1
Unique NameGgra1009.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length637
Homology
BLAST of Ggra1009.t1 vs. uniprot
Match: A0A2V3J2K4 (PWWP domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2K4_9FLOR)

HSP 1 Score: 200 bits (509), Expect = 2.250e-52
Identity = 184/658 (27.96%), Postives = 277/658 (42.10%), Query Frame = 0
Query:    8 LRFRPGDLVLCRYLNYPVWPARIALSHQRSACNSFVSQRRTRRGDAAVLAYWVVFTAESVGGWVRADCVLPYHPAYTAAMRAP-PRAAPVFRERRRALALARREFARGRSRFSFCETDLHLLRQLCAMPIDDFVDVRGGDSDAECERRVSDH----TAAADEQGGRRDSGDKRASLCA-----------RLRARALPRRSAAMQLRSRQPKRELRPHSARVLRTKSAKLADMEEEEEEQHAATFVQQSLHAPLKPPPKQ-PVSNAAHHQTVAHAECFEERQREVHTNIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQTNEYLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELEPQQHISMQPEPPP------KPPRRKKRGRPXXKALRVSQHHPVQVHSRIVKKEPVETPVAAHKRDPMVALTHVPLHMSAERQFKRKKRATPRKIVAPQQTVP----PETTDPMTQMIERMQRRITRQEKQIVLLSQQLKARE--AAQDSAMGHGYLPSIAMLSRTLDPEAVKAQGEKVNQKAVCFQTTLAQYVVLMENASKARKDVERAWKHLAEEGRCAEEHAMQVELFLSKLTPLTEFVRSVRM 636
            LRFRPGD+VLCRY NYPVWPA ++ +HQ +    + + R TR GD A++AYWV+F+ E VGGWVR DC++PY+P Y  A RA  P   P+  +++RAL++A  E ++  SRF +   D  +L +L  +P++DFVD++  DS+A+ E   S H                     +  C+           R   R  P R A     + +  +  +P   RV+ T S + + + + +++   A F+     +P+KP P+Q P S   +  T                                                                                   +++N                                                    EL P+      P P        +P  R+KRGRP        + HP+ V +R+ K+E   +     KR+P   LTH+P   S + Q +RK+R  PRK        P     ETT+   Q+I+RMQRRI RQ                  A+ SA G   LP I++L++ LDP+A++AQ EK +Q+ + FQ   AQ+    E    AR++ E AWK L E GR  E+H M +E+ +SK+    +F+R+VRM
Sbjct:  128 LRFRPGDIVLCRYFNYPVWPATVSRTHQPALRGRYFTMRPTRSGDDAIMAYWVIFSGERVGGWVRTDCLVPYNPMY--AHRAQLPSTDPIHHDQKRALSVAADEHSQVGSRFCYTPEDYFMLEELLRIPVNDFVDIKSQDSEADKEPEPSAHHEIPXXXXXXXXXXXXXXXXXSQSCSYDSEYVQHPTQRPGLRPRPPRKAHTDRPTLRSDKVSKPRPQRVVLTHSNQTSPVSDNDDD---ALFI-----SPVKPEPQQIPTSTPVNQPTXXXXXXXXT-------------------------------------------------------------------------PLESNP--------------------------------------------------AELLPKST----PAPXXXXXXXXRPFARRKRGRP--------RKHPLPVATRLAKQETSASTQGQVKREPQDILTHIPEKPSLQSQVRRKRRGRPRKSEXXXXXXPVLDPKETTE---QVIDRMQRRINRQXXXXXXXXXXXXXXXNLRAKGSAAGPSTLPHISLLTKLLDPDAIRAQNEKFSQRILAFQKMAAQFAYEAEKLDLARRNCENAWKALVETGRGTEQHLMDLEVLVSKIPEFVDFLRTVRM 637          
The following BLAST results are available for this feature:
BLAST of Ggra1009.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J2K42.250e-5227.96PWWP domain-containing protein n=1 Tax=Gracilariop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 509..529
NoneNo IPR availableGENE3D2.30.30.140coord: 6..103
e-value: 1.6E-6
score: 30.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 359..402
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 357..435
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 418..432
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 9..99
IPR000313PWWP domainPROSITEPS50812PWWPcoord: 12..82
score: 9.348948

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:386088..387998 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1009.t1Ggra1009.t1Gracilaria gracilis GNS1m malemRNAtig00000027_pilon 386088..387998 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1009.t1 ID=Ggra1009.t1|Name=Ggra1009.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=637bp
MCTSLAALRFRPGDLVLCRYLNYPVWPARIALSHQRSACNSFVSQRRTRR
GDAAVLAYWVVFTAESVGGWVRADCVLPYHPAYTAAMRAPPRAAPVFRER
RRALALARREFARGRSRFSFCETDLHLLRQLCAMPIDDFVDVRGGDSDAE
CERRVSDHTAAADEQGGRRDSGDKRASLCARLRARALPRRSAAMQLRSRQ
PKRELRPHSARVLRTKSAKLADMEEEEEEQHAATFVQQSLHAPLKPPPKQ
PVSNAAHHQTVAHAECFEERQREVHTNIQCLGAEERQMHENNQCLGAGER
QMHENNQCLGAGERQMHENNQCLGAEERQMHADNQCLGAEGRQIQTNEYL
ASEERQIRTNECLGSEERHMQTNECPGSEERQIRTDDCNGADEAEIHPEE
LEPQQHISMQPEPPPKPPRRKKRGRPPKKALRVSQHHPVQVHSRIVKKEP
VETPVAAHKRDPMVALTHVPLHMSAERQFKRKKRATPRKIVAPQQTVPPE
TTDPMTQMIERMQRRITRQEKQIVLLSQQLKAREAAQDSAMGHGYLPSIA
MLSRTLDPEAVKAQGEKVNQKAVCFQTTLAQYVVLMENASKARKDVERAW
KHLAEEGRCAEEHAMQVELFLSKLTPLTEFVRSVRM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000313PWWP_dom