Ggra6280.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6280.t1
Unique Name	Ggra6280.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:399591..400724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1489678.RDMS_10525
Preferred name	rsmH
PFAMs	Methyltransf_5
Max annot lvl	1297\|Deinococcus-Thermus
KEGG ko	ko:K03438
GOs	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Evalue	1.07e-69
EggNOG OGs	COG0275@1\|root,COG0275@2\|Bacteria,1WJ5G@1297\|Deinococcus-Thermus
EC	2.1.1.199
Description	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
COG category	J
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6280	Ggra6280	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 399591..400724 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6280.t1.start1	Ggra6280.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 399591..399593 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6280.t1.CDS1	Ggra6280.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 399591..400724 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6280.t1.exon1	Ggra6280.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 399591..400724 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6280.t1.stop1	Ggra6280.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 400722..400724 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6280.t1	Ggra6280.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 399591..400724 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:399591..400724+
coding sequence from alignment at tig00000879_pilon:399591..400724+

mRNA sequence

>Ggra6280.t1 ID=Ggra6280.t1|Name=Ggra6280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MVMMTSRLNENQVQPSMMNRASIIVASGFVHAFRPPRVLPSLRLLRKQTC
SIRFKTTAVAHPIAPTPQMSSTLPHIPVLLPEVCSSFPSHIPSFVDCTVG
AGGHARRLLLEKHIDRYIALDKDPHALRIATETLRDFDNVNFVRSDFRYV
RAVLHKLNMPSVHSMLLDIGTSSMQLDEAERGFSFTHDGPIDMRMSCTGM
SAEDLLHDGNEYELASIFWELGEERMSRRIARAIVKERELGSIRSTKQLA
TIVERVKGWRKKGIHPATKVFQALRIATNDELSALEEALTDAVDMLMPHG
RIVVISFHSLEDRIAKRVFKSASERKGGVKLITKKPVVASGDECEQNPRA
RSAKLRVVEKMEVDEMPRKKTNKYLDR*

spliced messenger RNA

>Ggra6280.t1 ID=Ggra6280.t1|Name=Ggra6280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000879_pilon:399591..400724+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATGATGACCTCGCGACTCAACGAGAATCAGGTGCAGCCATCCAT
GATGAATCGTGCATCGATCATAGTTGCATCAGGCTTCGTACATGCGTTTC
GTCCGCCACGGGTACTGCCATCTCTTCGCTTGCTTCGGAAGCAGACATGT
TCAATCAGATTCAAAACCACCGCTGTTGCACATCCTATTGCGCCGACGCC
TCAAATGTCGTCCACATTACCGCATATCCCTGTGCTCCTCCCTGAAGTTT
GTTCTTCGTTTCCTTCTCATATTCCTTCCTTTGTGGACTGCACGGTCGGC
GCTGGTGGCCATGCCAGACGATTATTACTTGAAAAGCATATCGACCGCTA
CATTGCGCTGGACAAAGACCCTCACGCTCTACGAATCGCTACAGAGACAT
TACGCGATTTCGATAACGTGAACTTCGTACGCTCGGATTTTCGCTACGTT
CGTGCTGTGCTGCATAAATTGAATATGCCTTCAGTTCATTCGATGTTGTT
GGATATTGGAACGTCGTCTATGCAATTGGATGAAGCTGAGCGTGGGTTTA
GCTTCACACATGATGGTCCCATCGATATGCGCATGTCATGCACAGGAATG
TCAGCTGAGGACTTACTCCACGACGGAAATGAATATGAGCTGGCATCCAT
ATTTTGGGAGCTCGGTGAGGAGCGTATGTCGCGTCGAATTGCAAGAGCCA
TTGTAAAAGAACGAGAGTTGGGCTCTATACGTTCGACAAAGCAGCTGGCC
ACCATCGTGGAGCGGGTAAAGGGGTGGAGAAAGAAGGGGATTCACCCAGC
GACAAAAGTATTTCAAGCTTTGCGCATCGCTACTAATGATGAGCTTTCGG
CTCTTGAGGAAGCACTTACAGATGCCGTGGATATGTTAATGCCACATGGA
AGAATAGTGGTCATTAGCTTTCATTCATTGGAAGACAGGATTGCCAAACG
TGTGTTCAAAAGTGCCTCAGAAAGAAAGGGTGGCGTGAAGCTAATCACAA
AGAAACCTGTTGTTGCGAGTGGGGACGAATGTGAACAGAATCCCAGGGCT
AGGAGTGCAAAGCTGCGAGTTGTGGAAAAGATGGAAGTTGATGAAATGCC
TCGCAAGAAGACCAACAAGTACCTTGACCGGTAA

protein sequence of Ggra6280.t1

>Ggra6280.t1 ID=Ggra6280.t1|Name=Ggra6280.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MVMMTSRLNENQVQPSMMNRASIIVASGFVHAFRPPRVLPSLRLLRKQTC
SIRFKTTAVAHPIAPTPQMSSTLPHIPVLLPEVCSSFPSHIPSFVDCTVG
AGGHARRLLLEKHIDRYIALDKDPHALRIATETLRDFDNVNFVRSDFRYV
RAVLHKLNMPSVHSMLLDIGTSSMQLDEAERGFSFTHDGPIDMRMSCTGM
SAEDLLHDGNEYELASIFWELGEERMSRRIARAIVKERELGSIRSTKQLA
TIVERVKGWRKKGIHPATKVFQALRIATNDELSALEEALTDAVDMLMPHG
RIVVISFHSLEDRIAKRVFKSASERKGGVKLITKKPVVASGDECEQNPRA
RSAKLRVVEKMEVDEMPRKKTNKYLDR*

mRNA from alignment at tig00000879_pilon:399591..400724+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6280.t1 ID=Ggra6280.t1|Name=Ggra6280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000879_pilon:399591..400724+ (Gracilaria gracilis GNS1m male)
ATGGTTATGATGACCTCGCGACTCAACGAGAATCAGGTGCAGCCATCCAT
GATGAATCGTGCATCGATCATAGTTGCATCAGGCTTCGTACATGCGTTTC
GTCCGCCACGGGTACTGCCATCTCTTCGCTTGCTTCGGAAGCAGACATGT
TCAATCAGATTCAAAACCACCGCTGTTGCACATCCTATTGCGCCGACGCC
TCAAATGTCGTCCACATTACCGCATATCCCTGTGCTCCTCCCTGAAGTTT
GTTCTTCGTTTCCTTCTCATATTCCTTCCTTTGTGGACTGCACGGTCGGC
GCTGGTGGCCATGCCAGACGATTATTACTTGAAAAGCATATCGACCGCTA
CATTGCGCTGGACAAAGACCCTCACGCTCTACGAATCGCTACAGAGACAT
TACGCGATTTCGATAACGTGAACTTCGTACGCTCGGATTTTCGCTACGTT
CGTGCTGTGCTGCATAAATTGAATATGCCTTCAGTTCATTCGATGTTGTT
GGATATTGGAACGTCGTCTATGCAATTGGATGAAGCTGAGCGTGGGTTTA
GCTTCACACATGATGGTCCCATCGATATGCGCATGTCATGCACAGGAATG
TCAGCTGAGGACTTACTCCACGACGGAAATGAATATGAGCTGGCATCCAT
ATTTTGGGAGCTCGGTGAGGAGCGTATGTCGCGTCGAATTGCAAGAGCCA
TTGTAAAAGAACGAGAGTTGGGCTCTATACGTTCGACAAAGCAGCTGGCC
ACCATCGTGGAGCGGGTAAAGGGGTGGAGAAAGAAGGGGATTCACCCAGC
GACAAAAGTATTTCAAGCTTTGCGCATCGCTACTAATGATGAGCTTTCGG
CTCTTGAGGAAGCACTTACAGATGCCGTGGATATGTTAATGCCACATGGA
AGAATAGTGGTCATTAGCTTTCATTCATTGGAAGACAGGATTGCCAAACG
TGTGTTCAAAAGTGCCTCAGAAAGAAAGGGTGGCGTGAAGCTAATCACAA
AGAAACCTGTTGTTGCGAGTGGGGACGAATGTGAACAGAATCCCAGGGCT
AGGAGTGCAAAGCTGCGAGTTGTGGAAAAGATGGAAGTTGATGAAATGCC
TCGCAAGAAGACCAACAAGTACCTTGACCGGTAA

Coding sequence (CDS) from alignment at tig00000879_pilon:399591..400724+

>Ggra6280.t1 ID=Ggra6280.t1|Name=Ggra6280.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000879_pilon:399591..400724+ (Gracilaria gracilis GNS1m male)
ATGGTTATGATGACCTCGCGACTCAACGAGAATCAGGTGCAGCCATCCAT
GATGAATCGTGCATCGATCATAGTTGCATCAGGCTTCGTACATGCGTTTC
GTCCGCCACGGGTACTGCCATCTCTTCGCTTGCTTCGGAAGCAGACATGT
TCAATCAGATTCAAAACCACCGCTGTTGCACATCCTATTGCGCCGACGCC
TCAAATGTCGTCCACATTACCGCATATCCCTGTGCTCCTCCCTGAAGTTT
GTTCTTCGTTTCCTTCTCATATTCCTTCCTTTGTGGACTGCACGGTCGGC
GCTGGTGGCCATGCCAGACGATTATTACTTGAAAAGCATATCGACCGCTA
CATTGCGCTGGACAAAGACCCTCACGCTCTACGAATCGCTACAGAGACAT
TACGCGATTTCGATAACGTGAACTTCGTACGCTCGGATTTTCGCTACGTT
CGTGCTGTGCTGCATAAATTGAATATGCCTTCAGTTCATTCGATGTTGTT
GGATATTGGAACGTCGTCTATGCAATTGGATGAAGCTGAGCGTGGGTTTA
GCTTCACACATGATGGTCCCATCGATATGCGCATGTCATGCACAGGAATG
TCAGCTGAGGACTTACTCCACGACGGAAATGAATATGAGCTGGCATCCAT
ATTTTGGGAGCTCGGTGAGGAGCGTATGTCGCGTCGAATTGCAAGAGCCA
TTGTAAAAGAACGAGAGTTGGGCTCTATACGTTCGACAAAGCAGCTGGCC
ACCATCGTGGAGCGGGTAAAGGGGTGGAGAAAGAAGGGGATTCACCCAGC
GACAAAAGTATTTCAAGCTTTGCGCATCGCTACTAATGATGAGCTTTCGG
CTCTTGAGGAAGCACTTACAGATGCCGTGGATATGTTAATGCCACATGGA
AGAATAGTGGTCATTAGCTTTCATTCATTGGAAGACAGGATTGCCAAACG
TGTGTTCAAAAGTGCCTCAGAAAGAAAGGGTGGCGTGAAGCTAATCACAA
AGAAACCTGTTGTTGCGAGTGGGGACGAATGTGAACAGAATCCCAGGGCT
AGGAGTGCAAAGCTGCGAGTTGTGGAAAAGATGGAAGTTGATGAAATGCC
TCGCAAGAAGACCAACAAGTACCTTGACCGGTAA