Ggra6297.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6297.t1
Unique NameGgra6297.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length261
Homology
BLAST of Ggra6297.t1 vs. uniprot
Match: A0A2V3IJL9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJL9_9FLOR)

HSP 1 Score: 253 bits (647), Expect = 5.310e-81
Identity = 138/255 (54.12%), Postives = 185/255 (72.55%), Query Frame = 0
Query:    1 MSMKTENEDKETSRALELDIEEYLSNLSDDVPNPLSYVNLKKAGRIDLVSRIMDAGGYIEVSKRLGVSVDEEQFVPPAKVSEVGRFEPFSEPEDQGASIAIGRSLEERMEFVHEFAKQGDSSEFITQRSNLRRIDSVPSAAELIEQNARIAPRVVDEPSVEGENLSLTIPMRLGLLSLTIITAIGFGKASSGVVSPDVISASKSIASGLTLAHSLLALYCALLVAPRMHRSSTLWFIKVLLGGPLAVVELRSLGS 255
            +SM TE+E  E+ RALE DI E+L  L +DV NPLSYV L++ GR+DL+SRIM+AGGYIEVSKR+G+ VDE QFVP  K  E    EP  + E+QGASIA+GR+LE+++  + +  ++   +     R  +R +D VPSA ELI QN +IAPRVVD+  +EGE+L LT P+RLGLL++    A+GFG+ S  VVS ++IS  + IA+GL  AH +L LY  L++AP M RSS+LWF+KV+LGGPLAV +LRS+ S
Sbjct:   19 VSMSTEDEGDESLRALESDIREFLDLLPEDVANPLSYVKLRREGRLDLISRIMNAGGYIEVSKRMGIPVDESQFVPTPKTFE-RTTEPLFQAEEQGASIAVGRNLEDKLNTIEDSMRKESRASRDKTRGYVR-MDDVPSADELIAQNQQIAPRVVDKQPIEGEDLFLTTPIRLGLLTMASFAALGFGRGSHTVVSVEIISLCRYIAAGLACAHCILGLYVVLILAPEMKRSSSLWFVKVILGGPLAVSQLRSMKS 271          
BLAST of Ggra6297.t1 vs. uniprot
Match: R1FQQ1 (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FQQ1_EMIHU)

HSP 1 Score: 78.6 bits (192), Expect = 1.350e-13
Identity = 64/187 (34.22%), Postives = 93/187 (49.73%), Query Frame = 0
Query:   25 SNLSD-DVPNPLSYVNLKKAGRIDLVSRIMDAGGYIEVSKRLGVSVDEEQFVPPAKVSEVGRFEPFSEPEDQGASIAI-GRSLEERMEFVHEFAKQGDSSEFITQRSNLRRIDSVPSAAELI-EQNARIAPRVVD--EPSVEGENLSLTIPMRLGLLSLTIITAIGFGKASSGVVSPDVISASKSIA 206
            S LSD D P+PL+Y  L++ GR+DLV   M  GGYI+VSK+LG+ +      PPA          FSEPE     + + G + E R++          S +   +R     ++       L+ E  A  AP      EP  EG  L L  P R  L++L  ITA+G+G ASSG++ P ++   ++ A
Sbjct:   61 SELSDADAPSPLAYDELRRKGRVDLVEGCMRHGGYIKVSKQLGLPL-RLAAPPPAPPPS-----SFSEPEAPAVGLKLSGAARESRLQEDIAAGVAAPSPQARPRRQPQPALELEKLRPGLVNEAVAAAAPPTAQAREPQREGARLRLEGPQRAALVALAWITALGYGHASSGLLDPSLLEPLRAAA 241          
BLAST of Ggra6297.t1 vs. uniprot
Match: A0A835Z3J1 (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.830e-13
Identity = 78/253 (30.83%), Postives = 114/253 (45.06%), Query Frame = 0
Query:   29 DDVPNPLSYVNLKKAGRIDLVSRIMDAGGYIEVSKRLGVSVDEEQFVPPAKVSEVGRFEPFSEP------EDQGASIAIGRSLEERMEFVHEFAKQ--GDSSEFITQRSNLRRIDSVPS---AAELIEQNARIAPRVV-------------DEPSVEGENLSLTIPMRLGLLSLTIITAIGFGKASSGVVS---PDV-ISASKSIASGLTLAHSLLALYCALLVAPRMHRSSTLWFIKVLLGGPLAVVELRSL 253
            D  P+PL Y  L+  G   LV  IM+AGGYI VS RLGV V       P        F P  EP      + +   +A+G +L+ERME     A Q   + S  + ++  L   D   +   AAE      R AP VV             D  ++  E + L+   R  +L+  +  A+GFG+ +   V    P+  + A+ ++   L LA++  A+  A + A R  R    W +K  L GP++V ELR L
Sbjct:   32 DGAPDPLEYSELRAYGYQYLVEPIMNAGGYIAVSNRLGVHVT------PKSRRRRAAFAPGEEPKLLRPSDAKEGFLALGSALDERMEAAAAAAPQRAAERSARLFEKQALMDADERAARRDAAEAAPVYRRAAPEVVAARAAXXXXXDXADAAALPRERIGLSALQRAYVLATAVSAAVGFGRGTPAAVDVGLPEAAVQAAAAVGFALLLANAGSAVLSARM-ASRGGRGVVHWALKGALAGPVSVAELRGL 277          
BLAST of Ggra6297.t1 vs. uniprot
Match: A0A7S2SV97 (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV97_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.240e-11
Identity = 61/227 (26.87%), Postives = 109/227 (48.02%), Query Frame = 0
Query:   33 NPLSYVNLKKAGRIDLVSRIMDAGGYIEVSKRLGVSVDEEQFVPPAKVSEVGRFEPFSEPEDQGASIAIGRSLEERMEFVHEFA--KQGDSSEFITQRSNLRRIDSVPSAAELIEQNARIA---PRVVDEPSVEGENLSLTIPMRLGLLSLTIITAIGFGKASSGVVSPDVIS-ASKSIASGLTLAHSLLALYC---ALLVAPRMHRSSTLWFIKVLLGGPLAVVEL 250
            +PLSY  L++ G  DLV  IM AGGY+ +S+ LG+S++  +  PP   + V      +  E+    +A+G +L++++         K   S+    +   +R +   P     + + ARIA       +E ++  E   L +  R   L    + AIG+G A+   ++   +S  ++ +AS L L   +  + C   ++ +A    RS  +WF+K  + GP A+ EL
Sbjct:  104 SPLSYAELRRLGFGDLVDPIMAAGGYLAISRELGISIERRR--PPPSPAPV-----LAADEEIQGGLALGGALDDKLAQASSTRGRKSDPSASSSVEAPRVRGMPEAPQVYTNVGKRARIAIGEEEAEEEEAIIQEFFLLNLAQRGYSLLGASVLAIGWGHATIEAIAAGWMSQTAQEVASNLALVVVVSNVACMAFSIRLAMDKQRSVMIWFLKCFMSGPTALAEL 323          
BLAST of Ggra6297.t1 vs. uniprot
Match: A0A7S0JKK3 (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JKK3_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 3.390e-9
Identity = 80/275 (29.09%), Postives = 117/275 (42.55%), Query Frame = 0
Query:   16 LELDIEEYLSNLSDDV------PNPLSYVNLKKAGRIDLVSRIMDAGGYIEVSKRLGVSVDEEQFVPPAKVSEVGRFEPFSEPEDQGASIAIGRSLEERME------FVHEFAKQGDSSEFITQRSNLRRI-----DSVPSAAELIEQNARIAPRVVDEPSVEGENLSLTIPMRLGLLSLTIITAIGFGKASSGVVSPDVISASKSIASGLTLAHSLLALYCALLVA-----------------PRMHRSS---TLWFIKVLLGGPLAVVELRSL 253
            L+ +I  YL+ L   +      P+PLSYV L++ GR DLV   M  GGY++VS  L V V      PP    E+G    F + E +   +    +LE R+        V   AK   ++  +  R  L  +     D+V  AAE +   A  APR     ++  + L      R  +L L ++ ++GFGKASS V     +   +  A+ L + H  +  Y ALLVA                 P    S+     W  KV L G   + E+R L
Sbjct:   31 LKREIRSYLTTLDPGILNNPAAPSPLSYVELQRNGRTDLVEGCMLHGGYLKVSDALRVRVS---LAPP---KEIGTTPGFLKEEGEVGLVLSASALEARLSEPVTAPAVSVPAKSAPTTGTMP-RDKLMPLKTTSSDAVGPAAEGV---AARAPRRNGALALRFDGLQ-----RASMLLLLVLVSLGFGKASSEVADASTLGVVQLAATALLIGHFSMGFYGALLVAKGGKAAELKSGALALGDPAQQASTGPPAFWLFKVALTGVGGLQEVRKL 290          
BLAST of Ggra6297.t1 vs. uniprot
Match: A0A7S2ZGW9 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZGW9_9RHOD)

HSP 1 Score: 62.8 bits (151), Expect = 7.470e-8
Identity = 58/223 (26.01%), Postives = 103/223 (46.19%), Query Frame = 0
Query:   33 NPLSYVNLKKAGRIDLVSRIMDAGGYIEVSKRLGVSVDEEQ-FVPPAKVSEVGRFEPFSEPEDQGASIAIGRSLEERMEFVH-EFAKQGDSSEFITQRSNLRRIDSVPSAAELIEQNARIAPRVVDEPSVEGENLSLTIPMRLGLLSLTIITAIGFGKASSGVVSPDVISASKSIASGLTLAHSLLALYCALLVAPRMHRSSTLWFIKVLLGGPLAVVELRSL 253
            +P++Y  L ++GR DL+  IM  GGY+EVSK++G+ V  E+  V P+      R    + P+D    + +G +  +++     E A    S     ++ N  R+ + PS   +      I P +  +   + E + L +  RL L++  ++ ++ FG+     V        K   +   + H   ALY   L   R +RS  LW  KV + G  +++ L+ L
Sbjct:   76 SPIAYAALARSGRYDLLDGIMKFGGYVEVSKKMGLEVGPEKPIVDPSAAPVFKR----NSPKDADGFLTLGGAKAQKLADEEVETAMSSGSERDALRKLNRERVVTPPSPTPI-----NIKP-LSKKGEQDEEVVQLNMVERLTLIAFVVLFSLAFGRLGQDFVEAGTRQIMKYAIAVTAVLHLGEALYAKQLAEER-NRSVFLWCSKVFVLGFGSLLRLKDL 287          
BLAST of Ggra6297.t1 vs. uniprot
Match: A0A7S2ZHC8 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZHC8_9RHOD)

HSP 1 Score: 56.2 bits (134), Expect = 8.260e-6
Identity = 42/162 (25.93%), Postives = 79/162 (48.77%), Query Frame = 0
Query:   33 NPLSYVNLKKAGRIDLVSRIMDAGGYIEVSKRLGVSVDEEQ-FVPPAKVSEVGRFEPFSEPEDQGASIAIGRSLEERMEFVH-EFAKQGDSSEFITQRSNLRRIDSVPSAAELIEQNARIAPRVVDEPSVEGENLSLTIPMRLGLLSLTIITAIGFGKASSG 192
            +P++Y  L ++GR DL+  IM  GGY+EVSK++G+ V  E+  V P+      R    + P+D    + +G +  +++     E A    S     ++ N  R+ + PS   +      I P +  +   + E + L +  RL L++  ++ ++ FG+   G
Sbjct:   76 SPIAYAALARSGRYDLLDGIMKFGGYVEVSKKMGLEVGPEKPIVDPSAAPVFKR----NSPKDADGFLTLGGAKAQKLADEEVETAMSSGSERDALRKLNRERVVTPPSPTPI-----NIKP-LSKKGEQDEEVVQLNMVERLTLIAFVVLFSLAFGRLGQG 227          
The following BLAST results are available for this feature:
BLAST of Ggra6297.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IJL95.310e-8154.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R1FQQ11.350e-1334.22Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A835Z3J12.830e-1330.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SV973.240e-1126.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0JKK33.390e-929.09Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2ZGW97.470e-826.01Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZHC88.260e-625.93Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..172
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 194..204
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..193
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 205..225
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 226..260
NoneNo IPR availableTMHMMTMhelixcoord: 205..224
NoneNo IPR availableTMHMMTMhelixcoord: 173..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:482644..483426 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6297.t1Ggra6297.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 482644..483426 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6297.t1 ID=Ggra6297.t1|Name=Ggra6297.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MSMKTENEDKETSRALELDIEEYLSNLSDDVPNPLSYVNLKKAGRIDLVS
RIMDAGGYIEVSKRLGVSVDEEQFVPPAKVSEVGRFEPFSEPEDQGASIA
IGRSLEERMEFVHEFAKQGDSSEFITQRSNLRRIDSVPSAAELIEQNARI
APRVVDEPSVEGENLSLTIPMRLGLLSLTIITAIGFGKASSGVVSPDVIS
ASKSIASGLTLAHSLLALYCALLVAPRMHRSSTLWFIKVLLGGPLAVVEL
RSLGSSKASR*
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