Ggra6278.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6278.t1
Unique NameGgra6278.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:395382..396600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702918.1
PFAMsFSH1,Rhodanese_C
Max annot lvl2759|Eukaryota
Evalue1.94e-28
EggNOG OGsKOG2551@1|root,KOG2551@2759|Eukaryota
Descriptionpolyketide biosynthetic process
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6278Ggra6278Gracilaria gracilis GNS1m malegenetig00000879_pilon 395382..396600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6278.t1Ggra6278.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 395382..396600 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6278.t1.stop1Ggra6278.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 395382..395384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6278.t1.CDS1Ggra6278.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 395382..395765 -
Ggra6278.t1.CDS2Ggra6278.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000879_pilon 395823..396133 -
Ggra6278.t1.CDS3Ggra6278.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000879_pilon 396594..396600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6278.t1.exon1Ggra6278.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 395382..395765 -
Ggra6278.t1.exon2Ggra6278.t1.exon2Gracilaria gracilis GNS1m maleexontig00000879_pilon 395823..396133 -
Ggra6278.t1.exon3Ggra6278.t1.exon3Gracilaria gracilis GNS1m maleexontig00000879_pilon 396594..396600 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6278.t1.intron1Ggra6278.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000879_pilon 395766..395822 -
Ggra6278.t1.intron2Ggra6278.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000879_pilon 396134..396593 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6278.t1.start1Ggra6278.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 396598..396600 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6278.t1 ID=Ggra6278.t1|Name=Ggra6278.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MPGTVQADLQSGSLKPSDDDAPLAELIYLDAPFVLEEHLTPPTAPLSYPA
GENNYAVLRPAPIRFQAFSETADLTPRTWWVADRQSSMYPGVDNTISYLQ
DVFRENRIDGLLGFSQGAAVASLVCALREQPEFNSLRFALLFSGFPSRAT
AHQPLYESSIKVPSLHVWGEQDEIVPPKACEALFDKFDNGSRGRYVHQKG
HLVPGDARARRAVSRFLLPFVDEIVESERKAAL*
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spliced messenger RNA

>Ggra6278.t1 ID=Ggra6278.t1|Name=Ggra6278.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000879_pilon:395382..396600- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGGGACTGTTCAAGCCGATCTGCAATCGGGCTCCTTAAAACCTTC
AGACGACGATGCACCGCTAGCCGAACTAATTTACTTGGATGCCCCTTTCG
TTCTGGAGGAACATCTCACTCCCCCGACAGCACCTTTGTCATACCCCGCA
GGTGAAAACAACTACGCAGTGCTGCGTCCTGCTCCAATACGATTCCAAGC
TTTCTCCGAAACCGCTGACCTGACGCCACGCACGTGGTGGGTTGCCGACA
GACAGTCCTCAATGTACCCTGGCGTTGATAACACAATCTCATACCTACAA
GACGTGTTCAGGGAAAACCGCATTGATGGTTTGCTCGGATTCTCGCAAGG
AGCCGCCGTCGCATCGCTCGTATGCGCACTACGAGAACAGCCCGAGTTCA
ACTCGTTACGATTCGCTCTTCTTTTCTCAGGGTTTCCGTCCCGTGCAACG
GCACACCAACCGCTCTATGAATCATCCATCAAAGTACCTAGCCTACATGT
ATGGGGTGAACAAGATGAGATTGTGCCGCCAAAGGCTTGTGAAGCACTCT
TCGACAAGTTTGACAACGGCTCCAGAGGTCGATATGTGCATCAAAAGGGG
CATCTGGTACCAGGCGATGCCAGAGCCAGACGCGCGGTGTCACGCTTTCT
ACTTCCTTTTGTTGACGAAATCGTCGAAAGTGAAAGAAAGGCGGCTTTGT
AA
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protein sequence of Ggra6278.t1

>Ggra6278.t1 ID=Ggra6278.t1|Name=Ggra6278.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MPGTVQADLQSGSLKPSDDDAPLAELIYLDAPFVLEEHLTPPTAPLSYPA
GENNYAVLRPAPIRFQAFSETADLTPRTWWVADRQSSMYPGVDNTISYLQ
DVFRENRIDGLLGFSQGAAVASLVCALREQPEFNSLRFALLFSGFPSRAT
AHQPLYESSIKVPSLHVWGEQDEIVPPKACEALFDKFDNGSRGRYVHQKG
HLVPGDARARRAVSRFLLPFVDEIVESERKAAL*
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mRNA from alignment at tig00000879_pilon:395382..396600-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6278.t1 ID=Ggra6278.t1|Name=Ggra6278.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1219bp|location=Sequence derived from alignment at tig00000879_pilon:395382..396600- (Gracilaria gracilis GNS1m male)
ATGCCGGGTAAGCCCATATAAGAGCTTCATCCGGTGTCCCTTTCGTGGGG
CGAGCAGTTAATGCGAGAGACGCTTGTCTATTTTAGGTTGATAAGAGGCT
CTCACCTGGTGGCCAGGCCACGTTAGTGGTGAGACTCATCAGTAACGTGG
CCCGGTTTGAATGCATGAATTTTCAGAGAAGATGGTGGACCAGGGCAAAC
GATAGCCTTCTCACCTTTCTTGTGAAACGGCACACGGCTCTACTTCGCCT
CTGGAACATCACATATCCGCAACAGTAATCTTCAGTTCTTACCCAGTTGT
AGACACCTGAGTGACAAAGGTTGGGCTTCCTTCAACTGTCCTTCCCCGTG
CGGTGGCAATGTCAAACCAACCTCTCCGAATAGCTTGTTTACATGGATAT
TGCCAAAGCTCGGTGAGCTTCCGCCGCAAAACAGGAGCGCTCCGAAAATC
ACTGACGCGACCCATAGGGACTGTTCAAGCCGATCTGCAATCGGGCTCCT
TAAAACCTTCAGACGACGATGCACCGCTAGCCGAACTAATTTACTTGGAT
GCCCCTTTCGTTCTGGAGGAACATCTCACTCCCCCGACAGCACCTTTGTC
ATACCCCGCAGGTGAAAACAACTACGCAGTGCTGCGTCCTGCTCCAATAC
GATTCCAAGCTTTCTCCGAAACCGCTGACCTGACGCCACGCACGTGGTGG
GTTGCCGACAGACAGTCCTCAATGTACCCTGGCGTTGATAACACAATCTC
ATACCTACAAGACGTGTTCAGGGAAAACGTAAGTGCTTTTCGTTCACTCC
TTCGCCCATGTACGTTTCTCTGACACAAAGCCCAGCGCATTGATGGTTTG
CTCGGATTCTCGCAAGGAGCCGCCGTCGCATCGCTCGTATGCGCACTACG
AGAACAGCCCGAGTTCAACTCGTTACGATTCGCTCTTCTTTTCTCAGGGT
TTCCGTCCCGTGCAACGGCACACCAACCGCTCTATGAATCATCCATCAAA
GTACCTAGCCTACATGTATGGGGTGAACAAGATGAGATTGTGCCGCCAAA
GGCTTGTGAAGCACTCTTCGACAAGTTTGACAACGGCTCCAGAGGTCGAT
ATGTGCATCAAAAGGGGCATCTGGTACCAGGCGATGCCAGAGCCAGACGC
GCGGTGTCACGCTTTCTACTTCCTTTTGTTGACGAAATCGTCGAAAGTGA
AAGAAAGGCGGCTTTGTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:395382..396600-

>Ggra6278.t1 ID=Ggra6278.t1|Name=Ggra6278.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000879_pilon:395382..396600- (Gracilaria gracilis GNS1m male)
ATGCCGGGGACTGTTCAAGCCGATCTGCAATCGGGCTCCTTAAAACCTTC
AGACGACGATGCACCGCTAGCCGAACTAATTTACTTGGATGCCCCTTTCG
TTCTGGAGGAACATCTCACTCCCCCGACAGCACCTTTGTCATACCCCGCA
GGTGAAAACAACTACGCAGTGCTGCGTCCTGCTCCAATACGATTCCAAGC
TTTCTCCGAAACCGCTGACCTGACGCCACGCACGTGGTGGGTTGCCGACA
GACAGTCCTCAATGTACCCTGGCGTTGATAACACAATCTCATACCTACAA
GACGTGTTCAGGGAAAACCGCATTGATGGTTTGCTCGGATTCTCGCAAGG
AGCCGCCGTCGCATCGCTCGTATGCGCACTACGAGAACAGCCCGAGTTCA
ACTCGTTACGATTCGCTCTTCTTTTCTCAGGGTTTCCGTCCCGTGCAACG
GCACACCAACCGCTCTATGAATCATCCATCAAAGTACCTAGCCTACATGT
ATGGGGTGAACAAGATGAGATTGTGCCGCCAAAGGCTTGTGAAGCACTCT
TCGACAAGTTTGACAACGGCTCCAGAGGTCGATATGTGCATCAAAAGGGG
CATCTGGTACCAGGCGATGCCAGAGCCAGACGCGCGGTGTCACGCTTTCT
ACTTCCTTTTGTTGACGAAATCGTCGAAAGTGAAAGAAAGGCGGCTTTGT
AA
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