Ggra9536.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9536.t1
Unique Name	Ggra9536.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	555

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:800625..802289 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9536	Ggra9536	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 800625..802289 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9536.t1.stop1	Ggra9536.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 800625..800627 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9536.t1.CDS1	Ggra9536.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 800625..802289 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9536.t1.exon1	Ggra9536.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 800625..802289 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9536.t1.start1	Ggra9536.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 802287..802289 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9536.t1	Ggra9536.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 800625..802289 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:800625..802289-
coding sequence from alignment at tig00000873_pilon:800625..802289-

mRNA sequence

>Ggra9536.t1 ID=Ggra9536.t1|Name=Ggra9536.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp
MDKEMDYEISLQRRTCIDFGLEKTSPLTSSTSPKMICNRVVRQKRSSNIM
DFAFRNEPETSRKKARRAMEVFRGKDKYGNGQGCDIDEHKTDQLFDKRTL
SKAYKNRWYAQVSSLETYHPTLFSNTERVRLQETEATSGALYYKGIGVTI
HNCLGLRRVYEVYFKSRFRNGEIGRAEFEKLRTTLSQFFRWAVSTYACAR
EDIWKEQTLFQSVADHKLVNGFMEFFIKKSSPGLVKTKSACLKRVCEVGI
LVLDDHVIKNQLELVSVVLQNITNASKRAHRSLCQNKKRVSERSTSAVLN
PPTMSSMNVIKDRAIGALDYVMRSCMRPGEEQDIGTKRSITYAHLKAWST
NFIGLLMLVSGGQRPQVFGQLQVPTREECRRFDLIFEQGSYIELRTVDEK
RPRYLDLPHLVLPATIIPYLKFHILRIRPAVQEFVRRFDNGPFKPLLLHD
QTALSLKPPQITREWQTFLSLQDPSLRSVTAMSLRRDYATMILKCYREKK
VFSDLTESEFLDKVSQQMNTSPEQLKRTYMGHIQLGPNDDVVEIVKYWGA
FLVS*

spliced messenger RNA

>Ggra9536.t1 ID=Ggra9536.t1|Name=Ggra9536.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1665bp|location=Sequence derived from alignment at tig00000873_pilon:800625..802289- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAAAGAGATGGACTACGAAATCTCATTGCAAAGGAGAACATGTAT
AGACTTTGGTTTGGAGAAGACGTCGCCGCTGACGAGTTCCACTTCGCCCA
AGATGATCTGCAATCGAGTTGTGAGGCAGAAACGTAGTTCGAACATAATG
GATTTCGCATTTCGAAATGAACCCGAAACTTCGCGTAAAAAAGCTAGACG
TGCCATGGAGGTCTTTCGAGGGAAGGATAAGTACGGAAATGGGCAGGGAT
GTGACATCGATGAACACAAGACAGATCAACTTTTTGATAAACGGACTCTT
TCAAAGGCCTACAAAAATCGTTGGTATGCACAGGTCTCTTCCTTGGAGAC
ATATCACCCTACCCTTTTTTCCAATACTGAAAGAGTGCGGCTCCAGGAAA
CTGAAGCAACATCGGGAGCGCTGTACTACAAGGGAATTGGGGTCACGATT
CACAACTGTCTTGGGTTACGACGAGTCTATGAGGTGTACTTTAAATCGAG
GTTTCGAAACGGGGAAATCGGAAGAGCTGAGTTTGAGAAACTTAGGACGA
CTCTCTCACAGTTTTTCAGATGGGCGGTGTCTACATATGCTTGTGCAAGA
GAGGATATTTGGAAGGAACAGACTCTGTTTCAAAGCGTGGCAGATCATAA
GCTTGTCAACGGCTTCATGGAGTTTTTCATCAAGAAAAGCTCTCCAGGTT
TGGTCAAGACAAAATCGGCCTGCCTGAAAAGGGTTTGCGAGGTAGGAATT
CTGGTCCTAGACGACCATGTCATCAAAAACCAACTCGAGCTCGTTTCCGT
CGTTCTTCAGAACATCACCAATGCTTCGAAACGCGCTCATCGCAGTCTTT
GTCAGAATAAGAAAAGAGTAAGCGAACGATCTACATCTGCGGTACTTAAC
CCGCCCACCATGTCGAGCATGAACGTCATAAAGGATCGAGCCATAGGTGC
GCTTGATTATGTGATGCGCTCGTGTATGCGGCCTGGAGAAGAACAGGACA
TTGGTACCAAAAGGTCCATCACTTACGCGCATTTGAAAGCCTGGTCTACA
AACTTTATCGGATTACTCATGTTGGTCTCTGGAGGTCAGAGACCTCAAGT
TTTTGGTCAGCTGCAAGTTCCAACAAGGGAGGAATGCAGGCGGTTTGATC
TTATTTTCGAGCAAGGTTCATACATTGAACTAAGAACCGTGGATGAGAAA
CGGCCCCGCTATCTTGATCTACCTCATTTGGTATTGCCCGCAACTATAAT
ACCGTACCTCAAATTCCATATCCTACGAATCCGTCCGGCCGTACAGGAAT
TTGTCCGAAGATTTGATAACGGGCCGTTCAAACCTCTCCTGCTGCACGAC
CAAACCGCCTTGAGCCTAAAACCACCGCAAATAACGAGAGAGTGGCAAAC
ATTCTTGTCGTTGCAAGACCCAAGTCTTCGCTCTGTGACTGCAATGTCTT
TAAGGAGGGATTATGCAACCATGATTCTTAAATGTTATCGTGAAAAGAAG
GTCTTTTCCGATCTCACAGAATCTGAGTTCCTAGATAAGGTGTCTCAACA
GATGAACACATCTCCGGAACAACTGAAGCGAACATATATGGGACACATTC
AACTTGGTCCCAACGATGACGTAGTGGAGATAGTGAAGTACTGGGGGGCA
TTCCTAGTGAGTTAG

protein sequence of Ggra9536.t1

>Ggra9536.t1 ID=Ggra9536.t1|Name=Ggra9536.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=555bp
MDKEMDYEISLQRRTCIDFGLEKTSPLTSSTSPKMICNRVVRQKRSSNIM
DFAFRNEPETSRKKARRAMEVFRGKDKYGNGQGCDIDEHKTDQLFDKRTL
SKAYKNRWYAQVSSLETYHPTLFSNTERVRLQETEATSGALYYKGIGVTI
HNCLGLRRVYEVYFKSRFRNGEIGRAEFEKLRTTLSQFFRWAVSTYACAR
EDIWKEQTLFQSVADHKLVNGFMEFFIKKSSPGLVKTKSACLKRVCEVGI
LVLDDHVIKNQLELVSVVLQNITNASKRAHRSLCQNKKRVSERSTSAVLN
PPTMSSMNVIKDRAIGALDYVMRSCMRPGEEQDIGTKRSITYAHLKAWST
NFIGLLMLVSGGQRPQVFGQLQVPTREECRRFDLIFEQGSYIELRTVDEK
RPRYLDLPHLVLPATIIPYLKFHILRIRPAVQEFVRRFDNGPFKPLLLHD
QTALSLKPPQITREWQTFLSLQDPSLRSVTAMSLRRDYATMILKCYREKK
VFSDLTESEFLDKVSQQMNTSPEQLKRTYMGHIQLGPNDDVVEIVKYWGA
FLVS*

mRNA from alignment at tig00000873_pilon:800625..802289-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9536.t1 ID=Ggra9536.t1|Name=Ggra9536.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1665bp|location=Sequence derived from alignment at tig00000873_pilon:800625..802289- (Gracilaria gracilis GNS1m male)
ATGGATAAAGAGATGGACTACGAAATCTCATTGCAAAGGAGAACATGTAT
AGACTTTGGTTTGGAGAAGACGTCGCCGCTGACGAGTTCCACTTCGCCCA
AGATGATCTGCAATCGAGTTGTGAGGCAGAAACGTAGTTCGAACATAATG
GATTTCGCATTTCGAAATGAACCCGAAACTTCGCGTAAAAAAGCTAGACG
TGCCATGGAGGTCTTTCGAGGGAAGGATAAGTACGGAAATGGGCAGGGAT
GTGACATCGATGAACACAAGACAGATCAACTTTTTGATAAACGGACTCTT
TCAAAGGCCTACAAAAATCGTTGGTATGCACAGGTCTCTTCCTTGGAGAC
ATATCACCCTACCCTTTTTTCCAATACTGAAAGAGTGCGGCTCCAGGAAA
CTGAAGCAACATCGGGAGCGCTGTACTACAAGGGAATTGGGGTCACGATT
CACAACTGTCTTGGGTTACGACGAGTCTATGAGGTGTACTTTAAATCGAG
GTTTCGAAACGGGGAAATCGGAAGAGCTGAGTTTGAGAAACTTAGGACGA
CTCTCTCACAGTTTTTCAGATGGGCGGTGTCTACATATGCTTGTGCAAGA
GAGGATATTTGGAAGGAACAGACTCTGTTTCAAAGCGTGGCAGATCATAA
GCTTGTCAACGGCTTCATGGAGTTTTTCATCAAGAAAAGCTCTCCAGGTT
TGGTCAAGACAAAATCGGCCTGCCTGAAAAGGGTTTGCGAGGTAGGAATT
CTGGTCCTAGACGACCATGTCATCAAAAACCAACTCGAGCTCGTTTCCGT
CGTTCTTCAGAACATCACCAATGCTTCGAAACGCGCTCATCGCAGTCTTT
GTCAGAATAAGAAAAGAGTAAGCGAACGATCTACATCTGCGGTACTTAAC
CCGCCCACCATGTCGAGCATGAACGTCATAAAGGATCGAGCCATAGGTGC
GCTTGATTATGTGATGCGCTCGTGTATGCGGCCTGGAGAAGAACAGGACA
TTGGTACCAAAAGGTCCATCACTTACGCGCATTTGAAAGCCTGGTCTACA
AACTTTATCGGATTACTCATGTTGGTCTCTGGAGGTCAGAGACCTCAAGT
TTTTGGTCAGCTGCAAGTTCCAACAAGGGAGGAATGCAGGCGGTTTGATC
TTATTTTCGAGCAAGGTTCATACATTGAACTAAGAACCGTGGATGAGAAA
CGGCCCCGCTATCTTGATCTACCTCATTTGGTATTGCCCGCAACTATAAT
ACCGTACCTCAAATTCCATATCCTACGAATCCGTCCGGCCGTACAGGAAT
TTGTCCGAAGATTTGATAACGGGCCGTTCAAACCTCTCCTGCTGCACGAC
CAAACCGCCTTGAGCCTAAAACCACCGCAAATAACGAGAGAGTGGCAAAC
ATTCTTGTCGTTGCAAGACCCAAGTCTTCGCTCTGTGACTGCAATGTCTT
TAAGGAGGGATTATGCAACCATGATTCTTAAATGTTATCGTGAAAAGAAG
GTCTTTTCCGATCTCACAGAATCTGAGTTCCTAGATAAGGTGTCTCAACA
GATGAACACATCTCCGGAACAACTGAAGCGAACATATATGGGACACATTC
AACTTGGTCCCAACGATGACGTAGTGGAGATAGTGAAGTACTGGGGGGCA
TTCCTAGTGAGTTAG

Coding sequence (CDS) from alignment at tig00000873_pilon:800625..802289-

>Ggra9536.t1 ID=Ggra9536.t1|Name=Ggra9536.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1665bp|location=Sequence derived from alignment at tig00000873_pilon:800625..802289- (Gracilaria gracilis GNS1m male)
ATGGATAAAGAGATGGACTACGAAATCTCATTGCAAAGGAGAACATGTAT
AGACTTTGGTTTGGAGAAGACGTCGCCGCTGACGAGTTCCACTTCGCCCA
AGATGATCTGCAATCGAGTTGTGAGGCAGAAACGTAGTTCGAACATAATG
GATTTCGCATTTCGAAATGAACCCGAAACTTCGCGTAAAAAAGCTAGACG
TGCCATGGAGGTCTTTCGAGGGAAGGATAAGTACGGAAATGGGCAGGGAT
GTGACATCGATGAACACAAGACAGATCAACTTTTTGATAAACGGACTCTT
TCAAAGGCCTACAAAAATCGTTGGTATGCACAGGTCTCTTCCTTGGAGAC
ATATCACCCTACCCTTTTTTCCAATACTGAAAGAGTGCGGCTCCAGGAAA
CTGAAGCAACATCGGGAGCGCTGTACTACAAGGGAATTGGGGTCACGATT
CACAACTGTCTTGGGTTACGACGAGTCTATGAGGTGTACTTTAAATCGAG
GTTTCGAAACGGGGAAATCGGAAGAGCTGAGTTTGAGAAACTTAGGACGA
CTCTCTCACAGTTTTTCAGATGGGCGGTGTCTACATATGCTTGTGCAAGA
GAGGATATTTGGAAGGAACAGACTCTGTTTCAAAGCGTGGCAGATCATAA
GCTTGTCAACGGCTTCATGGAGTTTTTCATCAAGAAAAGCTCTCCAGGTT
TGGTCAAGACAAAATCGGCCTGCCTGAAAAGGGTTTGCGAGGTAGGAATT
CTGGTCCTAGACGACCATGTCATCAAAAACCAACTCGAGCTCGTTTCCGT
CGTTCTTCAGAACATCACCAATGCTTCGAAACGCGCTCATCGCAGTCTTT
GTCAGAATAAGAAAAGAGTAAGCGAACGATCTACATCTGCGGTACTTAAC
CCGCCCACCATGTCGAGCATGAACGTCATAAAGGATCGAGCCATAGGTGC
GCTTGATTATGTGATGCGCTCGTGTATGCGGCCTGGAGAAGAACAGGACA
TTGGTACCAAAAGGTCCATCACTTACGCGCATTTGAAAGCCTGGTCTACA
AACTTTATCGGATTACTCATGTTGGTCTCTGGAGGTCAGAGACCTCAAGT
TTTTGGTCAGCTGCAAGTTCCAACAAGGGAGGAATGCAGGCGGTTTGATC
TTATTTTCGAGCAAGGTTCATACATTGAACTAAGAACCGTGGATGAGAAA
CGGCCCCGCTATCTTGATCTACCTCATTTGGTATTGCCCGCAACTATAAT
ACCGTACCTCAAATTCCATATCCTACGAATCCGTCCGGCCGTACAGGAAT
TTGTCCGAAGATTTGATAACGGGCCGTTCAAACCTCTCCTGCTGCACGAC
CAAACCGCCTTGAGCCTAAAACCACCGCAAATAACGAGAGAGTGGCAAAC
ATTCTTGTCGTTGCAAGACCCAAGTCTTCGCTCTGTGACTGCAATGTCTT
TAAGGAGGGATTATGCAACCATGATTCTTAAATGTTATCGTGAAAAGAAG
GTCTTTTCCGATCTCACAGAATCTGAGTTCCTAGATAAGGTGTCTCAACA
GATGAACACATCTCCGGAACAACTGAAGCGAACATATATGGGACACATTC
AACTTGGTCCCAACGATGACGTAGTGGAGATAGTGAAGTACTGGGGGGCA
TTCCTAGTGAGTTAG