Ggra9526.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9526.t1
Unique NameGgra9526.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length787
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:452305..454720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9526Ggra9526Gracilaria gracilis GNS1m malegenetig00000873_pilon 452305..454720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9526.t1Ggra9526.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 452305..454720 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9526.t1.stop1Ggra9526.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 452305..452307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9526.t1.CDS1Ggra9526.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 452305..453089 -
Ggra9526.t1.CDS2Ggra9526.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 453145..454720 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9526.t1.exon1Ggra9526.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 452305..453089 -
Ggra9526.t1.exon2Ggra9526.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 453145..454720 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9526.t1.intron1Ggra9526.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 453090..453144 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9526.t1.start1Ggra9526.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 454718..454720 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9526.t1 ID=Ggra9526.t1|Name=Ggra9526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=787bp
MVTPDPYLNHMGSPGTSVRARTRSGTWRLSVPHVGQSDAVTSRDGAPSAT
NADTLMVEPAWGPEWVEVLSISSSDSPIVDKKPIRFTPAVECSPSQPLPH
GTHHTMSGAGASRGRGSGIAKSGSRGAALYHSRIQTGFRSQPVQSSSHQP
EGIHEGIRDPYGPEPEIPRGISYYGLETFTTADWNVSQHGTFGVDPRMVS
QATLYRRNWPVAPGNTSLPGVLRRPTLDTYLGLFRWDCEHLRSVLQTLHR
RDKESQPRQGRGECYDSRPRHTPMRYFIPPLYPSDLPYVRIESKLHYYRR
LVVKICQYDSLPQQYLPASPHLICFDRPYNTIHWANRRRWGVDAATEARI
RTRSSFNRVMHGFHNVEFFSQPNKGRTSWYVARPEWWNAYEVPMSLSVPT
PPVLAYFGSYITHKHDRYYLIWSIALAEWAVLVAILALQAARDGIDGDCR
SREADIYRDGVQPPGRMFFILPRVIRDIRLFGLGTIVAGTDYSIEQLESL
LTQVESFPLGANSGVGGFRSGVLEGWSPEPFPTVMESPAATPVVTLVPTP
APEGRNTPAHTGVTPLLPSTTRVDGPPRAILGGVMAAAAAPVLSQVDSQA
ISGLMARVRQACVVNFQRAGFNSVVEALTLLESILPLHAQYMRSFSQIGE
FRNRFQVELHHMATNQVAGLATAMDPTPTNSLEGPLFGASLNPGLLTAPQ
APLHIGSSVPPSVAQANAPTPMGPEVLPGVSVPTSTPVGHGSAPSQAPGQ
AHLFQPWLGAHQNTTPGRGSSAGGSLGPHFATHPSG*
back to top

spliced messenger RNA

>Ggra9526.t1 ID=Ggra9526.t1|Name=Ggra9526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2361bp|location=Sequence derived from alignment at tig00000873_pilon:452305..454720- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACCCCCGATCCTTATCTGAACCACATGGGTAGCCCTGGTACCAG
CGTGCGGGCTCGCACCCGTAGCGGTACATGGCGATTGTCGGTTCCCCATG
TTGGTCAATCGGACGCGGTAACCTCAAGGGACGGCGCGCCATCGGCGACC
AATGCCGATACCTTAATGGTTGAACCAGCATGGGGCCCCGAATGGGTGGA
GGTTTTGAGCATCAGCTCTAGTGACTCACCCATTGTGGATAAAAAGCCGA
TTCGCTTCACACCTGCGGTCGAATGCTCGCCGTCTCAACCACTCCCTCAC
GGTACTCATCACACCATGTCGGGTGCCGGTGCTTCGCGCGGCCGCGGAAG
CGGCATTGCCAAGTCTGGTTCTCGGGGTGCTGCTTTGTACCATTCCCGCA
TCCAAACTGGTTTCCGGAGCCAGCCGGTTCAGTCTTCCTCACATCAACCT
GAAGGGATTCACGAAGGGATCCGGGACCCGTATGGTCCGGAGCCCGAGAT
TCCTCGTGGTATTTCCTATTATGGTTTGGAGACGTTCACCACGGCCGACT
GGAACGTTTCCCAACATGGTACCTTCGGGGTCGATCCAAGAATGGTGTCG
CAAGCGACGCTGTACCGTCGGAACTGGCCAGTGGCGCCGGGGAACACATC
ACTTCCCGGCGTCTTGCGCCGTCCGACCTTGGATACCTACTTGGGTTTGT
TTCGTTGGGATTGCGAGCATCTCCGCTCCGTCTTGCAAACGCTCCACCGT
CGGGATAAGGAATCTCAACCTCGTCAGGGTCGGGGGGAGTGCTATGATAG
CCGCCCGCGACACACACCAATGAGGTATTTCATTCCTCCGCTTTATCCCA
GCGATCTGCCGTATGTTCGTATTGAATCGAAGCTCCATTATTACCGACGT
CTGGTTGTGAAGATCTGTCAGTACGACTCCCTTCCGCAGCAGTACCTTCC
GGCTTCTCCACATTTGATTTGCTTCGATAGGCCTTACAATACCATCCATT
GGGCTAACCGTCGTAGGTGGGGGGTGGATGCTGCCACCGAGGCTCGCATT
CGCACCCGGTCCAGCTTCAACCGCGTCATGCATGGGTTCCATAATGTGGA
GTTCTTCTCACAACCTAATAAGGGAAGAACCTCTTGGTATGTGGCCCGAC
CTGAATGGTGGAATGCCTATGAGGTTCCGATGTCGCTTAGCGTCCCAACC
CCACCGGTATTGGCTTACTTCGGGAGCTACATCACCCATAAACACGATCG
GTATTACCTCATTTGGTCGATTGCCCTCGCGGAATGGGCCGTATTGGTGG
CCATCCTGGCTCTGCAGGCTGCCCGTGACGGTATTGACGGGGATTGTCGT
TCTCGAGAAGCCGACATTTACCGTGACGGTGTGCAACCTCCTGGTCGTAT
GTTTTTCATTCTCCCGAGGGTCATTCGCGACATTCGCCTATTTGGACTCG
GAACCATTGTGGCAGGTACGGATTACTCCATTGAGCAGCTGGAGTCGTTG
CTTACCCAAGTGGAGAGTTTCCCGTTGGGAGCCAATTCAGGGGTGGGAGG
TTTTCGATCCGGTGTCCTGGAAGGTTGGAGTCCCGAGCCATTCCCAACCG
TGATGGAATCGCCAGCAGCTACCCCTGTGGTCACTTTAGTGCCTACTCCC
GCTCCGGAGGGACGCAATACGCCTGCCCATACTGGTGTGACTCCTCTTCT
CCCTAGTACCACAAGGGTTGATGGGCCTCCGCGGGCTATCCTCGGGGGTG
TCATGGCTGCGGCTGCGGCGCCTGTCCTCTCTCAGGTGGACTCCCAGGCC
ATTTCAGGTTTAATGGCTCGGGTCCGCCAAGCCTGTGTGGTGAACTTCCA
GCGGGCGGGTTTTAACTCTGTGGTCGAAGCTCTTACCCTTCTGGAAAGCA
TCCTGCCTCTTCATGCACAGTACATGCGATCCTTTTCCCAAATTGGTGAG
TTCCGGAACCGGTTCCAGGTCGAGCTCCACCACATGGCTACCAACCAAGT
GGCGGGCTTGGCGACGGCCATGGACCCGACGCCTACAAACTCTTTGGAGG
GTCCCCTTTTTGGTGCTAGCCTGAACCCCGGCCTTCTAACCGCTCCGCAG
GCTCCTCTCCACATCGGGTCGTCGGTACCTCCTTCGGTTGCGCAGGCGAA
CGCGCCAACTCCGATGGGTCCCGAAGTATTGCCAGGCGTCAGCGTGCCTA
CTAGTACCCCCGTGGGTCATGGTAGCGCGCCTAGCCAGGCTCCGGGCCAG
GCTCATCTCTTCCAGCCTTGGCTAGGAGCCCATCAGAACACCACTCCGGG
TCGGGGATCCTCAGCTGGAGGCTCCTTGGGGCCTCACTTTGCGACTCACC
CATCAGGTTGA
back to top

protein sequence of Ggra9526.t1

>Ggra9526.t1 ID=Ggra9526.t1|Name=Ggra9526.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=787bp
MVTPDPYLNHMGSPGTSVRARTRSGTWRLSVPHVGQSDAVTSRDGAPSAT
NADTLMVEPAWGPEWVEVLSISSSDSPIVDKKPIRFTPAVECSPSQPLPH
GTHHTMSGAGASRGRGSGIAKSGSRGAALYHSRIQTGFRSQPVQSSSHQP
EGIHEGIRDPYGPEPEIPRGISYYGLETFTTADWNVSQHGTFGVDPRMVS
QATLYRRNWPVAPGNTSLPGVLRRPTLDTYLGLFRWDCEHLRSVLQTLHR
RDKESQPRQGRGECYDSRPRHTPMRYFIPPLYPSDLPYVRIESKLHYYRR
LVVKICQYDSLPQQYLPASPHLICFDRPYNTIHWANRRRWGVDAATEARI
RTRSSFNRVMHGFHNVEFFSQPNKGRTSWYVARPEWWNAYEVPMSLSVPT
PPVLAYFGSYITHKHDRYYLIWSIALAEWAVLVAILALQAARDGIDGDCR
SREADIYRDGVQPPGRMFFILPRVIRDIRLFGLGTIVAGTDYSIEQLESL
LTQVESFPLGANSGVGGFRSGVLEGWSPEPFPTVMESPAATPVVTLVPTP
APEGRNTPAHTGVTPLLPSTTRVDGPPRAILGGVMAAAAAPVLSQVDSQA
ISGLMARVRQACVVNFQRAGFNSVVEALTLLESILPLHAQYMRSFSQIGE
FRNRFQVELHHMATNQVAGLATAMDPTPTNSLEGPLFGASLNPGLLTAPQ
APLHIGSSVPPSVAQANAPTPMGPEVLPGVSVPTSTPVGHGSAPSQAPGQ
AHLFQPWLGAHQNTTPGRGSSAGGSLGPHFATHPSG*
back to top

mRNA from alignment at tig00000873_pilon:452305..454720-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9526.t1 ID=Ggra9526.t1|Name=Ggra9526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2416bp|location=Sequence derived from alignment at tig00000873_pilon:452305..454720- (Gracilaria gracilis GNS1m male)
ATGGTGACCCCCGATCCTTATCTGAACCACATGGGTAGCCCTGGTACCAG
CGTGCGGGCTCGCACCCGTAGCGGTACATGGCGATTGTCGGTTCCCCATG
TTGGTCAATCGGACGCGGTAACCTCAAGGGACGGCGCGCCATCGGCGACC
AATGCCGATACCTTAATGGTTGAACCAGCATGGGGCCCCGAATGGGTGGA
GGTTTTGAGCATCAGCTCTAGTGACTCACCCATTGTGGATAAAAAGCCGA
TTCGCTTCACACCTGCGGTCGAATGCTCGCCGTCTCAACCACTCCCTCAC
GGTACTCATCACACCATGTCGGGTGCCGGTGCTTCGCGCGGCCGCGGAAG
CGGCATTGCCAAGTCTGGTTCTCGGGGTGCTGCTTTGTACCATTCCCGCA
TCCAAACTGGTTTCCGGAGCCAGCCGGTTCAGTCTTCCTCACATCAACCT
GAAGGGATTCACGAAGGGATCCGGGACCCGTATGGTCCGGAGCCCGAGAT
TCCTCGTGGTATTTCCTATTATGGTTTGGAGACGTTCACCACGGCCGACT
GGAACGTTTCCCAACATGGTACCTTCGGGGTCGATCCAAGAATGGTGTCG
CAAGCGACGCTGTACCGTCGGAACTGGCCAGTGGCGCCGGGGAACACATC
ACTTCCCGGCGTCTTGCGCCGTCCGACCTTGGATACCTACTTGGGTTTGT
TTCGTTGGGATTGCGAGCATCTCCGCTCCGTCTTGCAAACGCTCCACCGT
CGGGATAAGGAATCTCAACCTCGTCAGGGTCGGGGGGAGTGCTATGATAG
CCGCCCGCGACACACACCAATGAGGTATTTCATTCCTCCGCTTTATCCCA
GCGATCTGCCGTATGTTCGTATTGAATCGAAGCTCCATTATTACCGACGT
CTGGTTGTGAAGATCTGTCAGTACGACTCCCTTCCGCAGCAGTACCTTCC
GGCTTCTCCACATTTGATTTGCTTCGATAGGCCTTACAATACCATCCATT
GGGCTAACCGTCGTAGGTGGGGGGTGGATGCTGCCACCGAGGCTCGCATT
CGCACCCGGTCCAGCTTCAACCGCGTCATGCATGGGTTCCATAATGTGGA
GTTCTTCTCACAACCTAATAAGGGAAGAACCTCTTGGTATGTGGCCCGAC
CTGAATGGTGGAATGCCTATGAGGTTCCGATGTCGCTTAGCGTCCCAACC
CCACCGGTATTGGCTTACTTCGGGAGCTACATCACCCATAAACACGATCG
GTATTACCTCATTTGGTCGATTGCCCTCGCGGAATGGGCCGTATTGGTGG
CCATCCTGGCTCTGCAGGCTGCCCGTGACGGTATTGACGGGGATTGTCGT
TCTCGAGAAGCCGACATTTACCGTGACGGTGTGCAACCTCCTGGTCGTAT
GTTTTTCATTCTCCCGAGGGTCATTCGCGACATTCGCCTATTTGGACTCG
GAACCATTGTGGCAGGTACGGATTACTCCATTGAGCAGCTGGAGTCGTTG
CTTACCCAAGTGGAGAGTTTCCCGTTGGGAGCCAATTCAGGGGTGGGAGG
TTTTCGATCCGGTGTCCTGGAAGGTTGTATTTCGCACGGAGCAGCGCTAT
CCCGGGGCTCCGACCGATCAGGGACCTCCAGGGAGTCCCGAGCCATTCCC
AACCGTGATGGAATCGCCAGCAGCTACCCCTGTGGTCACTTTAGTGCCTA
CTCCCGCTCCGGAGGGACGCAATACGCCTGCCCATACTGGTGTGACTCCT
CTTCTCCCTAGTACCACAAGGGTTGATGGGCCTCCGCGGGCTATCCTCGG
GGGTGTCATGGCTGCGGCTGCGGCGCCTGTCCTCTCTCAGGTGGACTCCC
AGGCCATTTCAGGTTTAATGGCTCGGGTCCGCCAAGCCTGTGTGGTGAAC
TTCCAGCGGGCGGGTTTTAACTCTGTGGTCGAAGCTCTTACCCTTCTGGA
AAGCATCCTGCCTCTTCATGCACAGTACATGCGATCCTTTTCCCAAATTG
GTGAGTTCCGGAACCGGTTCCAGGTCGAGCTCCACCACATGGCTACCAAC
CAAGTGGCGGGCTTGGCGACGGCCATGGACCCGACGCCTACAAACTCTTT
GGAGGGTCCCCTTTTTGGTGCTAGCCTGAACCCCGGCCTTCTAACCGCTC
CGCAGGCTCCTCTCCACATCGGGTCGTCGGTACCTCCTTCGGTTGCGCAG
GCGAACGCGCCAACTCCGATGGGTCCCGAAGTATTGCCAGGCGTCAGCGT
GCCTACTAGTACCCCCGTGGGTCATGGTAGCGCGCCTAGCCAGGCTCCGG
GCCAGGCTCATCTCTTCCAGCCTTGGCTAGGAGCCCATCAGAACACCACT
CCGGGTCGGGGATCCTCAGCTGGAGGCTCCTTGGGGCCTCACTTTGCGAC
TCACCCATCAGGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000873_pilon:452305..454720-

>Ggra9526.t1 ID=Ggra9526.t1|Name=Ggra9526.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2361bp|location=Sequence derived from alignment at tig00000873_pilon:452305..454720- (Gracilaria gracilis GNS1m male)
ATGGTGACCCCCGATCCTTATCTGAACCACATGGGTAGCCCTGGTACCAG
CGTGCGGGCTCGCACCCGTAGCGGTACATGGCGATTGTCGGTTCCCCATG
TTGGTCAATCGGACGCGGTAACCTCAAGGGACGGCGCGCCATCGGCGACC
AATGCCGATACCTTAATGGTTGAACCAGCATGGGGCCCCGAATGGGTGGA
GGTTTTGAGCATCAGCTCTAGTGACTCACCCATTGTGGATAAAAAGCCGA
TTCGCTTCACACCTGCGGTCGAATGCTCGCCGTCTCAACCACTCCCTCAC
GGTACTCATCACACCATGTCGGGTGCCGGTGCTTCGCGCGGCCGCGGAAG
CGGCATTGCCAAGTCTGGTTCTCGGGGTGCTGCTTTGTACCATTCCCGCA
TCCAAACTGGTTTCCGGAGCCAGCCGGTTCAGTCTTCCTCACATCAACCT
GAAGGGATTCACGAAGGGATCCGGGACCCGTATGGTCCGGAGCCCGAGAT
TCCTCGTGGTATTTCCTATTATGGTTTGGAGACGTTCACCACGGCCGACT
GGAACGTTTCCCAACATGGTACCTTCGGGGTCGATCCAAGAATGGTGTCG
CAAGCGACGCTGTACCGTCGGAACTGGCCAGTGGCGCCGGGGAACACATC
ACTTCCCGGCGTCTTGCGCCGTCCGACCTTGGATACCTACTTGGGTTTGT
TTCGTTGGGATTGCGAGCATCTCCGCTCCGTCTTGCAAACGCTCCACCGT
CGGGATAAGGAATCTCAACCTCGTCAGGGTCGGGGGGAGTGCTATGATAG
CCGCCCGCGACACACACCAATGAGGTATTTCATTCCTCCGCTTTATCCCA
GCGATCTGCCGTATGTTCGTATTGAATCGAAGCTCCATTATTACCGACGT
CTGGTTGTGAAGATCTGTCAGTACGACTCCCTTCCGCAGCAGTACCTTCC
GGCTTCTCCACATTTGATTTGCTTCGATAGGCCTTACAATACCATCCATT
GGGCTAACCGTCGTAGGTGGGGGGTGGATGCTGCCACCGAGGCTCGCATT
CGCACCCGGTCCAGCTTCAACCGCGTCATGCATGGGTTCCATAATGTGGA
GTTCTTCTCACAACCTAATAAGGGAAGAACCTCTTGGTATGTGGCCCGAC
CTGAATGGTGGAATGCCTATGAGGTTCCGATGTCGCTTAGCGTCCCAACC
CCACCGGTATTGGCTTACTTCGGGAGCTACATCACCCATAAACACGATCG
GTATTACCTCATTTGGTCGATTGCCCTCGCGGAATGGGCCGTATTGGTGG
CCATCCTGGCTCTGCAGGCTGCCCGTGACGGTATTGACGGGGATTGTCGT
TCTCGAGAAGCCGACATTTACCGTGACGGTGTGCAACCTCCTGGTCGTAT
GTTTTTCATTCTCCCGAGGGTCATTCGCGACATTCGCCTATTTGGACTCG
GAACCATTGTGGCAGGTACGGATTACTCCATTGAGCAGCTGGAGTCGTTG
CTTACCCAAGTGGAGAGTTTCCCGTTGGGAGCCAATTCAGGGGTGGGAGG
TTTTCGATCCGGTGTCCTGGAAGGTTGGAGTCCCGAGCCATTCCCAACCG
TGATGGAATCGCCAGCAGCTACCCCTGTGGTCACTTTAGTGCCTACTCCC
GCTCCGGAGGGACGCAATACGCCTGCCCATACTGGTGTGACTCCTCTTCT
CCCTAGTACCACAAGGGTTGATGGGCCTCCGCGGGCTATCCTCGGGGGTG
TCATGGCTGCGGCTGCGGCGCCTGTCCTCTCTCAGGTGGACTCCCAGGCC
ATTTCAGGTTTAATGGCTCGGGTCCGCCAAGCCTGTGTGGTGAACTTCCA
GCGGGCGGGTTTTAACTCTGTGGTCGAAGCTCTTACCCTTCTGGAAAGCA
TCCTGCCTCTTCATGCACAGTACATGCGATCCTTTTCCCAAATTGGTGAG
TTCCGGAACCGGTTCCAGGTCGAGCTCCACCACATGGCTACCAACCAAGT
GGCGGGCTTGGCGACGGCCATGGACCCGACGCCTACAAACTCTTTGGAGG
GTCCCCTTTTTGGTGCTAGCCTGAACCCCGGCCTTCTAACCGCTCCGCAG
GCTCCTCTCCACATCGGGTCGTCGGTACCTCCTTCGGTTGCGCAGGCGAA
CGCGCCAACTCCGATGGGTCCCGAAGTATTGCCAGGCGTCAGCGTGCCTA
CTAGTACCCCCGTGGGTCATGGTAGCGCGCCTAGCCAGGCTCCGGGCCAG
GCTCATCTCTTCCAGCCTTGGCTAGGAGCCCATCAGAACACCACTCCGGG
TCGGGGATCCTCAGCTGGAGGCTCCTTGGGGCCTCACTTTGCGACTCACC
CATCAGGTTGA
back to top