Ggra9510.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9510.t1
Unique NameGgra9510.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:351047..351814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_13091T0
Preferred namePUP3
PFAMsProteasome
Max annot lvl4751|Fungi
KEGG koko:K02735
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0016020,GO:0016504,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0030234,GO:0031323,GO:0031325,GO:0031331,GO:0031597,GO:0031984,GO:0032268,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0042175,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0062033,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0090068,GO:0098772,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue5.32e-91
EggNOG OGsCOG0638@1|root,KOG0180@2759|Eukaryota,38GZR@33154|Opisthokonta,3NWF8@4751|Fungi
EC3.4.25.1
DescriptionProteasome subunit beta
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9510Ggra9510Gracilaria gracilis GNS1m malegenetig00000873_pilon 351047..351814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9510.t1Ggra9510.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 351047..351814 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9510.t1.stop1Ggra9510.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 351047..351049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9510.t1.CDS1Ggra9510.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 351047..351565 -
Ggra9510.t1.CDS2Ggra9510.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 351633..351725 -
Ggra9510.t1.CDS3Ggra9510.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000873_pilon 351812..351814 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9510.t1.exon1Ggra9510.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 351047..351565 -
Ggra9510.t1.exon2Ggra9510.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 351633..351725 -
Ggra9510.t1.exon3Ggra9510.t1.exon3Gracilaria gracilis GNS1m maleexontig00000873_pilon 351812..351814 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9510.t1.intron1Ggra9510.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 351566..351632 -
Ggra9510.t1.intron2Ggra9510.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000873_pilon 351726..351811 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9510.t1.start1Ggra9510.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 351812..351814 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9510.t1 ID=Ggra9510.t1|Name=Ggra9510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MSILEYNGGCVLAMAGKNCVAIASDKRLGVQLTTVAMDANRIFPMHDKLY
LGLTGLMTDITTLDQLFRFKLELYAMRENRLMKPKTFASLVSSTLYSKRF
APYFSEPVIAGLDSDNKPYICSMDLLGCIAEETDFCVAGTCAESLFGTCE
TFYKKDLEPDELFETMSQALLAALDRDCISGWGAVVHIISKDGVETRELD
GRMD*
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spliced messenger RNA

>Ggra9510.t1 ID=Ggra9510.t1|Name=Ggra9510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000873_pilon:351047..351814- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATTCTTGAATACAATGGCGGCTGCGTTCTGGCCATGGCTGGAAA
GAACTGCGTGGCAATCGCGAGCGACAAAAGACTGGGAGTTCAACTCACTA
CTGTCGCAATGGATGCGAACCGCATCTTTCCAATGCATGACAAGCTTTAT
TTGGGTCTCACAGGCCTTATGACTGATATCACAACGCTCGATCAGCTTTT
CCGTTTCAAACTGGAGTTGTATGCCATGCGCGAAAACCGGCTGATGAAAC
CAAAGACTTTTGCTAGTCTTGTATCCTCCACTTTGTATTCAAAGCGATTC
GCGCCTTATTTCTCGGAGCCGGTTATAGCGGGGTTAGATAGCGACAACAA
GCCGTACATTTGCAGCATGGATCTGTTGGGATGTATTGCGGAGGAGACTG
ATTTTTGTGTCGCTGGAACGTGTGCGGAGAGTTTGTTTGGTACATGCGAA
ACGTTTTACAAGAAGGACCTCGAACCTGACGAGCTCTTTGAAACAATGAG
TCAGGCTCTTCTTGCGGCTTTGGATCGTGATTGCATCTCTGGCTGGGGTG
CTGTTGTTCATATTATTTCCAAGGATGGTGTTGAGACCAGGGAGCTTGAC
GGAAGAATGGACTAG
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protein sequence of Ggra9510.t1

>Ggra9510.t1 ID=Ggra9510.t1|Name=Ggra9510.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MSILEYNGGCVLAMAGKNCVAIASDKRLGVQLTTVAMDANRIFPMHDKLY
LGLTGLMTDITTLDQLFRFKLELYAMRENRLMKPKTFASLVSSTLYSKRF
APYFSEPVIAGLDSDNKPYICSMDLLGCIAEETDFCVAGTCAESLFGTCE
TFYKKDLEPDELFETMSQALLAALDRDCISGWGAVVHIISKDGVETRELD
GRMD*
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mRNA from alignment at tig00000873_pilon:351047..351814-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9510.t1 ID=Ggra9510.t1|Name=Ggra9510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00000873_pilon:351047..351814- (Gracilaria gracilis GNS1m male)
ATGGTAGGTTGACGACGACATTGGAGCGAACGATAAGTACAATCGCATAC
GACAGGGCTTTTCTCTGACCGTCTTCATACGATAAACAGAGCATTCTTGA
ATACAATGGCGGCTGCGTTCTGGCCATGGCTGGAAAGAACTGCGTGGCAA
TCGCGAGCGACAAAAGACTGGGAGTTCAACTCGTACGTTGTCAGATTGCA
TTTCATTCCTGTTCTTCAACACCTTTCTGACAACCTTTGTGCAAAACAGA
CTACTGTCGCAATGGATGCGAACCGCATCTTTCCAATGCATGACAAGCTT
TATTTGGGTCTCACAGGCCTTATGACTGATATCACAACGCTCGATCAGCT
TTTCCGTTTCAAACTGGAGTTGTATGCCATGCGCGAAAACCGGCTGATGA
AACCAAAGACTTTTGCTAGTCTTGTATCCTCCACTTTGTATTCAAAGCGA
TTCGCGCCTTATTTCTCGGAGCCGGTTATAGCGGGGTTAGATAGCGACAA
CAAGCCGTACATTTGCAGCATGGATCTGTTGGGATGTATTGCGGAGGAGA
CTGATTTTTGTGTCGCTGGAACGTGTGCGGAGAGTTTGTTTGGTACATGC
GAAACGTTTTACAAGAAGGACCTCGAACCTGACGAGCTCTTTGAAACAAT
GAGTCAGGCTCTTCTTGCGGCTTTGGATCGTGATTGCATCTCTGGCTGGG
GTGCTGTTGTTCATATTATTTCCAAGGATGGTGTTGAGACCAGGGAGCTT
GACGGAAGAATGGACTAG
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Coding sequence (CDS) from alignment at tig00000873_pilon:351047..351814-

>Ggra9510.t1 ID=Ggra9510.t1|Name=Ggra9510.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000873_pilon:351047..351814- (Gracilaria gracilis GNS1m male)
ATGAGCATTCTTGAATACAATGGCGGCTGCGTTCTGGCCATGGCTGGAAA
GAACTGCGTGGCAATCGCGAGCGACAAAAGACTGGGAGTTCAACTCACTA
CTGTCGCAATGGATGCGAACCGCATCTTTCCAATGCATGACAAGCTTTAT
TTGGGTCTCACAGGCCTTATGACTGATATCACAACGCTCGATCAGCTTTT
CCGTTTCAAACTGGAGTTGTATGCCATGCGCGAAAACCGGCTGATGAAAC
CAAAGACTTTTGCTAGTCTTGTATCCTCCACTTTGTATTCAAAGCGATTC
GCGCCTTATTTCTCGGAGCCGGTTATAGCGGGGTTAGATAGCGACAACAA
GCCGTACATTTGCAGCATGGATCTGTTGGGATGTATTGCGGAGGAGACTG
ATTTTTGTGTCGCTGGAACGTGTGCGGAGAGTTTGTTTGGTACATGCGAA
ACGTTTTACAAGAAGGACCTCGAACCTGACGAGCTCTTTGAAACAATGAG
TCAGGCTCTTCTTGCGGCTTTGGATCGTGATTGCATCTCTGGCTGGGGTG
CTGTTGTTCATATTATTTCCAAGGATGGTGTTGAGACCAGGGAGCTTGAC
GGAAGAATGGACTAG
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