Ggra9481.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9481.t1
Unique NameGgra9481.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:27645..28655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9481Ggra9481Gracilaria gracilis GNS1m malegenetig00000873_pilon 27645..28655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9481.t1Ggra9481.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 27645..28655 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9481.t1.stop1Ggra9481.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 27645..27647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9481.t1.CDS1Ggra9481.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 27645..27877 -
Ggra9481.t1.CDS2Ggra9481.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 27962..28655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9481.t1.exon1Ggra9481.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 27645..27877 -
Ggra9481.t1.exon2Ggra9481.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 27962..28655 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9481.t1.intron1Ggra9481.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 27878..27961 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9481.t1.start1Ggra9481.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 28653..28655 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9481.t1 ID=Ggra9481.t1|Name=Ggra9481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MSPTFLIALALVCTLLSTTSATAAAKSSRGALKGRALRCCVMHEPPIASL
SNPTWINHGLQGIAASYVAQLQAYLNWTCSSVTPFDHGSCTAFSTFTHMM
QRCSKNGSVRQQPQCRCDIGIGGWFQTSTRFHQVDYLPPFSYNAIGVVVP
LQYTATDLEPYFFLTSFHTSVWVLIAVQIFAFVLLRLLDPQLAPTQPFHP
LPSTETYFKCISHFLMCHPFPYRVRHSVRITLSRMIFAPDLDDNRNGVQW
CIDIIQVVCSLFLLMVYGASMSASLENVPITSDLRDAGDFKSCEIRPSDV
CTLKGWLF*
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spliced messenger RNA

>Ggra9481.t1 ID=Ggra9481.t1|Name=Ggra9481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000873_pilon:27645..28655- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCAACTTTTCTCATTGCCCTCGCGCTCGTTTGCACCCTACTCTC
AACCACTTCTGCCACCGCCGCCGCCAAGTCCAGCCGCGGCGCGCTAAAAG
GCCGTGCATTACGCTGCTGCGTCATGCACGAGCCGCCCATAGCCTCGCTG
TCCAACCCCACCTGGATCAACCACGGTCTGCAAGGAATTGCCGCGTCGTA
CGTCGCGCAATTGCAGGCCTATCTCAACTGGACCTGCTCGTCCGTCACGC
CGTTCGACCACGGCAGCTGCACTGCATTCTCCACCTTCACCCACATGATG
CAGCGCTGTTCGAAGAACGGATCCGTCAGACAACAACCCCAGTGCCGCTG
TGATATTGGTATTGGCGGTTGGTTTCAAACTTCTACTCGCTTTCATCAGG
TTGATTACCTGCCCCCCTTCTCATATAATGCGATTGGCGTCGTTGTTCCG
CTGCAGTATACCGCCACCGACCTTGAGCCCTATTTCTTTCTCACGTCGTT
CCATACATCTGTGTGGGTTCTTATCGCTGTTCAGATATTTGCCTTTGTGC
TATTGAGACTCTTGGATCCGCAATTGGCGCCCACGCAGCCGTTTCATCCG
TTGCCCAGTACCGAAACTTATTTCAAATGCATCTCGCATTTCTTAATGTG
TCACCCTTTCCCATATCGTGTCCGTCATTCTGTTCGAATTACACTAAGCC
GAATGATATTTGCTCCGGACTTGGACGACAACAGAAATGGCGTACAGTGG
TGTATCGATATCATTCAAGTGGTTTGCAGCCTGTTTCTTCTAATGGTGTA
CGGCGCTAGCATGAGTGCATCTCTGGAAAACGTCCCCATTACCTCCGATT
TACGAGACGCGGGAGACTTTAAGTCATGCGAAATCCGACCATCGGATGTG
TGTACCTTAAAGGGGTGGCTATTTTGA
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protein sequence of Ggra9481.t1

>Ggra9481.t1 ID=Ggra9481.t1|Name=Ggra9481.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MSPTFLIALALVCTLLSTTSATAAAKSSRGALKGRALRCCVMHEPPIASL
SNPTWINHGLQGIAASYVAQLQAYLNWTCSSVTPFDHGSCTAFSTFTHMM
QRCSKNGSVRQQPQCRCDIGIGGWFQTSTRFHQVDYLPPFSYNAIGVVVP
LQYTATDLEPYFFLTSFHTSVWVLIAVQIFAFVLLRLLDPQLAPTQPFHP
LPSTETYFKCISHFLMCHPFPYRVRHSVRITLSRMIFAPDLDDNRNGVQW
CIDIIQVVCSLFLLMVYGASMSASLENVPITSDLRDAGDFKSCEIRPSDV
CTLKGWLF*
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mRNA from alignment at tig00000873_pilon:27645..28655-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9481.t1 ID=Ggra9481.t1|Name=Ggra9481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000873_pilon:27645..28655- (Gracilaria gracilis GNS1m male)
ATGTCCCCAACTTTTCTCATTGCCCTCGCGCTCGTTTGCACCCTACTCTC
AACCACTTCTGCCACCGCCGCCGCCAAGTCCAGCCGCGGCGCGCTAAAAG
GCCGTGCATTACGCTGCTGCGTCATGCACGAGCCGCCCATAGCCTCGCTG
TCCAACCCCACCTGGATCAACCACGGTCTGCAAGGAATTGCCGCGTCGTA
CGTCGCGCAATTGCAGGCCTATCTCAACTGGACCTGCTCGTCCGTCACGC
CGTTCGACCACGGCAGCTGCACTGCATTCTCCACCTTCACCCACATGATG
CAGCGCTGTTCGAAGAACGGATCCGTCAGACAACAACCCCAGTGCCGCTG
TGATATTGGTATTGGCGGTTGGTTTCAAACTTCTACTCGCTTTCATCAGG
TTGATTACCTGCCCCCCTTCTCATATAATGCGATTGGCGTCGTTGTTCCG
CTGCAGTATACCGCCACCGACCTTGAGCCCTATTTCTTTCTCACGTCGTT
CCATACATCTGTGTGGGTTCTTATCGCTGTTCAGATATTTGCCTTTGTGC
TATTGAGACTCTTGGATCCGCAATTGGCGCCCACGCAGCCGTTTCATCCG
TTGCCCAGTACCGAAACTTATTTCAAATGCATCTCGCATTTCTTAATGTG
TCACCCTTTCCCATATCGTGTCCGTCATTCTGTTCGAATTACACGTAAGT
TCATAACTCTATGCGTCTCTCAGCAATGTCATGTTTTCACCAACTGTTTG
TTGTTTTTGCCAAATAAACGTGATCAAGTAAGCCGAATGATATTTGCTCC
GGACTTGGACGACAACAGAAATGGCGTACAGTGGTGTATCGATATCATTC
AAGTGGTTTGCAGCCTGTTTCTTCTAATGGTGTACGGCGCTAGCATGAGT
GCATCTCTGGAAAACGTCCCCATTACCTCCGATTTACGAGACGCGGGAGA
CTTTAAGTCATGCGAAATCCGACCATCGGATGTGTGTACCTTAAAGGGGT
GGCTATTTTGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:27645..28655-

>Ggra9481.t1 ID=Ggra9481.t1|Name=Ggra9481.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000873_pilon:27645..28655- (Gracilaria gracilis GNS1m male)
ATGTCCCCAACTTTTCTCATTGCCCTCGCGCTCGTTTGCACCCTACTCTC
AACCACTTCTGCCACCGCCGCCGCCAAGTCCAGCCGCGGCGCGCTAAAAG
GCCGTGCATTACGCTGCTGCGTCATGCACGAGCCGCCCATAGCCTCGCTG
TCCAACCCCACCTGGATCAACCACGGTCTGCAAGGAATTGCCGCGTCGTA
CGTCGCGCAATTGCAGGCCTATCTCAACTGGACCTGCTCGTCCGTCACGC
CGTTCGACCACGGCAGCTGCACTGCATTCTCCACCTTCACCCACATGATG
CAGCGCTGTTCGAAGAACGGATCCGTCAGACAACAACCCCAGTGCCGCTG
TGATATTGGTATTGGCGGTTGGTTTCAAACTTCTACTCGCTTTCATCAGG
TTGATTACCTGCCCCCCTTCTCATATAATGCGATTGGCGTCGTTGTTCCG
CTGCAGTATACCGCCACCGACCTTGAGCCCTATTTCTTTCTCACGTCGTT
CCATACATCTGTGTGGGTTCTTATCGCTGTTCAGATATTTGCCTTTGTGC
TATTGAGACTCTTGGATCCGCAATTGGCGCCCACGCAGCCGTTTCATCCG
TTGCCCAGTACCGAAACTTATTTCAAATGCATCTCGCATTTCTTAATGTG
TCACCCTTTCCCATATCGTGTCCGTCATTCTGTTCGAATTACACTAAGCC
GAATGATATTTGCTCCGGACTTGGACGACAACAGAAATGGCGTACAGTGG
TGTATCGATATCATTCAAGTGGTTTGCAGCCTGTTTCTTCTAATGGTGTA
CGGCGCTAGCATGAGTGCATCTCTGGAAAACGTCCCCATTACCTCCGATT
TACGAGACGCGGGAGACTTTAAGTCATGCGAAATCCGACCATCGGATGTG
TGTACCTTAAAGGGGTGGCTATTTTGA
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