Ggra9503.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9503.t1
Unique NameGgra9503.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:330292..331167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9503Ggra9503Gracilaria gracilis GNS1m malegenetig00000873_pilon 330292..331167 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9503.t1.stop1Ggra9503.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 330292..330294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9503.t1.CDS1Ggra9503.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 330292..331167 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9503.t1.exon1Ggra9503.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 330292..331167 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9503.t1.start1Ggra9503.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 331165..331167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9503.t1Ggra9503.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 330292..331167 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9503.t1 ID=Ggra9503.t1|Name=Ggra9503.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MAPSNPPLCVFTPSPVEKTTKPVVACNEEDNFDGNNLFDSSLDELPSAET
VSVQSDEIQTCTHPVYFSFETDHILRTAATSNAPDKTAPQDNIHKENEPG
TQWCVKRNTDSKSGNTFKCDIIQSTEPEIYSEDSFLMYKNMQVDTVEIES
LHAPSVSQRNKTNVTEACNAFEAANSATEDIWAALFCDPAEHMDEILEEE
VKEIEHVGDNENAENNMKTAERSNARKIGELQGWECANAVEEVELQLDNA
DSILGIRFNREANTRIENFMREIRLNDNNPQFFDDHQTYHH*
back to top

spliced messenger RNA

>Ggra9503.t1 ID=Ggra9503.t1|Name=Ggra9503.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000873_pilon:330292..331167- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCCTCCAATCCACCACTGTGCGTCTTCACACCATCCCCTGTGGA
GAAGACCACCAAACCCGTTGTAGCCTGCAACGAAGAAGATAACTTTGACG
GAAACAATTTGTTTGATTCCTCTTTGGATGAACTGCCAAGCGCAGAAACA
GTTTCTGTTCAATCTGATGAGATTCAGACTTGTACACACCCTGTATACTT
CTCTTTCGAAACTGATCATATCTTACGAACAGCAGCCACTTCCAATGCAC
CAGACAAAACTGCTCCGCAAGACAATATCCATAAAGAAAATGAGCCAGGG
ACTCAATGGTGTGTGAAACGCAATACAGATTCTAAATCAGGTAACACCTT
CAAATGTGACATCATACAGAGCACAGAACCGGAGATATACAGTGAAGATT
CTTTCTTGATGTACAAAAATATGCAAGTCGACACAGTAGAGATTGAATCA
CTACACGCTCCGAGTGTTTCACAAAGAAACAAAACGAATGTTACCGAGGC
CTGCAACGCGTTTGAAGCTGCAAACAGTGCAACTGAAGACATTTGGGCGG
CATTATTTTGCGACCCGGCGGAGCACATGGACGAAATTCTCGAAGAAGAG
GTGAAGGAAATTGAACATGTAGGAGACAATGAGAATGCCGAAAATAACAT
GAAAACTGCAGAGCGCAGCAACGCCCGCAAAATAGGAGAGTTACAAGGAT
GGGAATGCGCCAATGCAGTTGAAGAAGTCGAACTTCAGCTCGATAATGCA
GACAGTATTCTTGGGATCCGTTTCAACAGAGAGGCGAACACAAGAATAGA
GAATTTTATGAGAGAAATTCGTCTGAACGACAACAACCCGCAGTTCTTTG
ATGATCATCAAACATATCATCACTAG
back to top

protein sequence of Ggra9503.t1

>Ggra9503.t1 ID=Ggra9503.t1|Name=Ggra9503.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MAPSNPPLCVFTPSPVEKTTKPVVACNEEDNFDGNNLFDSSLDELPSAET
VSVQSDEIQTCTHPVYFSFETDHILRTAATSNAPDKTAPQDNIHKENEPG
TQWCVKRNTDSKSGNTFKCDIIQSTEPEIYSEDSFLMYKNMQVDTVEIES
LHAPSVSQRNKTNVTEACNAFEAANSATEDIWAALFCDPAEHMDEILEEE
VKEIEHVGDNENAENNMKTAERSNARKIGELQGWECANAVEEVELQLDNA
DSILGIRFNREANTRIENFMREIRLNDNNPQFFDDHQTYHH*
back to top

mRNA from alignment at tig00000873_pilon:330292..331167-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9503.t1 ID=Ggra9503.t1|Name=Ggra9503.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000873_pilon:330292..331167- (Gracilaria gracilis GNS1m male)
ATGGCACCCTCCAATCCACCACTGTGCGTCTTCACACCATCCCCTGTGGA
GAAGACCACCAAACCCGTTGTAGCCTGCAACGAAGAAGATAACTTTGACG
GAAACAATTTGTTTGATTCCTCTTTGGATGAACTGCCAAGCGCAGAAACA
GTTTCTGTTCAATCTGATGAGATTCAGACTTGTACACACCCTGTATACTT
CTCTTTCGAAACTGATCATATCTTACGAACAGCAGCCACTTCCAATGCAC
CAGACAAAACTGCTCCGCAAGACAATATCCATAAAGAAAATGAGCCAGGG
ACTCAATGGTGTGTGAAACGCAATACAGATTCTAAATCAGGTAACACCTT
CAAATGTGACATCATACAGAGCACAGAACCGGAGATATACAGTGAAGATT
CTTTCTTGATGTACAAAAATATGCAAGTCGACACAGTAGAGATTGAATCA
CTACACGCTCCGAGTGTTTCACAAAGAAACAAAACGAATGTTACCGAGGC
CTGCAACGCGTTTGAAGCTGCAAACAGTGCAACTGAAGACATTTGGGCGG
CATTATTTTGCGACCCGGCGGAGCACATGGACGAAATTCTCGAAGAAGAG
GTGAAGGAAATTGAACATGTAGGAGACAATGAGAATGCCGAAAATAACAT
GAAAACTGCAGAGCGCAGCAACGCCCGCAAAATAGGAGAGTTACAAGGAT
GGGAATGCGCCAATGCAGTTGAAGAAGTCGAACTTCAGCTCGATAATGCA
GACAGTATTCTTGGGATCCGTTTCAACAGAGAGGCGAACACAAGAATAGA
GAATTTTATGAGAGAAATTCGTCTGAACGACAACAACCCGCAGTTCTTTG
ATGATCATCAAACATATCATCACTAG
back to top

Coding sequence (CDS) from alignment at tig00000873_pilon:330292..331167-

>Ggra9503.t1 ID=Ggra9503.t1|Name=Ggra9503.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000873_pilon:330292..331167- (Gracilaria gracilis GNS1m male)
ATGGCACCCTCCAATCCACCACTGTGCGTCTTCACACCATCCCCTGTGGA
GAAGACCACCAAACCCGTTGTAGCCTGCAACGAAGAAGATAACTTTGACG
GAAACAATTTGTTTGATTCCTCTTTGGATGAACTGCCAAGCGCAGAAACA
GTTTCTGTTCAATCTGATGAGATTCAGACTTGTACACACCCTGTATACTT
CTCTTTCGAAACTGATCATATCTTACGAACAGCAGCCACTTCCAATGCAC
CAGACAAAACTGCTCCGCAAGACAATATCCATAAAGAAAATGAGCCAGGG
ACTCAATGGTGTGTGAAACGCAATACAGATTCTAAATCAGGTAACACCTT
CAAATGTGACATCATACAGAGCACAGAACCGGAGATATACAGTGAAGATT
CTTTCTTGATGTACAAAAATATGCAAGTCGACACAGTAGAGATTGAATCA
CTACACGCTCCGAGTGTTTCACAAAGAAACAAAACGAATGTTACCGAGGC
CTGCAACGCGTTTGAAGCTGCAAACAGTGCAACTGAAGACATTTGGGCGG
CATTATTTTGCGACCCGGCGGAGCACATGGACGAAATTCTCGAAGAAGAG
GTGAAGGAAATTGAACATGTAGGAGACAATGAGAATGCCGAAAATAACAT
GAAAACTGCAGAGCGCAGCAACGCCCGCAAAATAGGAGAGTTACAAGGAT
GGGAATGCGCCAATGCAGTTGAAGAAGTCGAACTTCAGCTCGATAATGCA
GACAGTATTCTTGGGATCCGTTTCAACAGAGAGGCGAACACAAGAATAGA
GAATTTTATGAGAGAAATTCGTCTGAACGACAACAACCCGCAGTTCTTTG
ATGATCATCAAACATATCATCACTAG
back to top