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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4577.GRMZM2G028183_P02 |
| PFAMs | zf-RING_2 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K10601 |
| KEGG Pathway | ko04120,ko04141,map04120,map04141 |
| KEGG Module | M00403 |
| GOs | GO:0000151,GO:0000153,GO:0000209,GO:0000835,GO:0000836,GO:0002020,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0023052,GO:0030163,GO:0030433,GO:0030968,GO:0031984,GO:0032446,GO:0032991,GO:0033554,GO:0034620,GO:0034645,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036513,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070085,GO:0070647,GO:0070887,GO:0071310,GO:0071704,GO:0071944,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1902494,GO:1990234,GO:1990381 |
| Evalue | 6.17e-74 |
| EggNOG OGs | COG5243@1|root,KOG0802@2759|Eukaryota,37I7G@33090|Viridiplantae,3G92U@35493|Streptophyta,3KS0B@4447|Liliopsida,3I9D7@38820|Poales |
| EC | 2.3.2.27 |
| Description | Ring finger domain |
| COG category | O |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra8212.t1.stop1 | Ggra8212.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000872_pilon 150741..150743 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra8212.t1.start1 | Ggra8212.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000872_pilon 153009..153011 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra8212.t1 ID=Ggra8212.t1|Name=Ggra8212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=757bp MALVSVLLIWRLTQLIFLGPLRFRELERLHLRARDAIIEYCFAISVFRDD FNTRFVALIMTLLLLKSLHWLAKDRTDYLEEQLRCPLRTHIRLVGLLMLL AFLDCFLAATCIQATLQSNGRSMFVLFSFEFTLLFIELAANVFQYIFFLI DQRMDGRWASKGVFSFYAELLCDLSTLTIYIVFFIYVQIYYSFPYHIIRE FYVTLSKFQRKCADFLRYRRVVANMHEVVDEVTEEELQQGDRTCIICREE MESAIKLVCGHIFHRRCLENWLKRQLSCPTCRATIDVNRGARNREGSANQ NQNGNQQQPAANAAGGQAVTPNQAQRPLQPGQQPAQRQQQPPRPQAGQAG PQNANIGEAGARLLNFANQWINQVMNEAGMRPQANAQNPNAPNANNAQAN HHHHHHHHHHHRNQANLANWLQNRDMAAYANQQGAQPQNQNAFNPGLPGP NAIAHMQLRARRRGAFAGLRQYPPMYRVRLPPLNNAANAMNNTPNQNANP TTLGQPPTSGSPEQAAASSHANAPNQPNIPQQGTAGSSSATAAASSSSTP NPFASVQTASSSRGPAVSHAQASSSGSSSVRAESQVPRAAQTNHLSATSA AIQMALGYPLGTGAQALPLERLFEIQRQIEVLRSEVQSLVLYATEAQLSA MESEEQQQNDAQESSEVAASEGQNTTTNDVAQASASVGASSTDAANAASA VESTQNVAADAGAEQGDEAEQEVTENGSGVRNEEEDSEAERIRRRRIEFL ERTSRS* back to topspliced messenger RNA >Ggra8212.t1 ID=Ggra8212.t1|Name=Ggra8212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2271bp|location=Sequence derived from alignment at tig00000872_pilon:150741..153011- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCACTAGTCTCTGTATTACTAATTTGGCGTCTCACACAACTAATTTT CCTCGGCCCTCTCCGCTTCCGGGAACTAGAGCGGTTACATCTTCGTGCTC GTGATGCTATCATCGAGTACTGTTTCGCCATCTCTGTGTTCCGAGATGAT TTCAACACACGTTTTGTTGCGCTCATCATGACTCTGTTGTTGTTAAAGAG TCTACATTGGCTTGCAAAGGATCGAACCGATTATCTGGAGGAACAACTGC GATGCCCGCTGCGTACTCACATTCGCCTTGTGGGCTTGCTCATGTTGCTC GCGTTCCTCGACTGTTTTCTGGCGGCGACATGTATCCAAGCCACTTTGCA AAGCAACGGCAGATCTATGTTTGTTCTATTTTCATTTGAGTTTACCCTAC TTTTCATTGAACTCGCTGCGAATGTATTCCAGTATATCTTCTTCCTTATT GACCAGCGAATGGATGGGCGATGGGCATCAAAGGGTGTCTTCTCTTTTTA TGCGGAGCTCCTGTGTGATTTGTCAACGCTTACAATCTATATTGTCTTCT TCATATACGTCCAGATTTACTACTCCTTCCCCTACCACATCATTCGAGAG TTTTATGTGACGCTCAGTAAGTTCCAACGCAAGTGTGCTGATTTCCTTCG CTACCGTCGTGTCGTGGCCAATATGCATGAGGTAGTGGATGAGGTCACGG AAGAGGAACTTCAACAAGGAGATCGAACTTGTATCATTTGTCGAGAAGAA ATGGAATCAGCTATTAAGCTGGTCTGTGGGCACATATTCCATCGCCGATG CCTCGAGAACTGGCTGAAGCGTCAACTGAGCTGTCCAACGTGCAGAGCTA CTATCGATGTGAACCGAGGTGCGCGAAATCGCGAAGGTTCCGCGAATCAG AATCAAAACGGAAACCAACAACAACCAGCAGCAAACGCGGCTGGAGGGCA AGCTGTGACTCCGAACCAAGCGCAGCGACCATTGCAACCGGGGCAGCAGC CTGCTCAACGGCAACAGCAGCCTCCCCGACCACAAGCAGGTCAAGCAGGT CCCCAAAATGCTAACATCGGCGAAGCCGGTGCTCGCTTGCTTAACTTTGC TAACCAATGGATTAATCAGGTTATGAATGAAGCTGGGATGCGACCGCAGG CTAATGCGCAAAATCCAAATGCTCCAAACGCTAACAATGCACAGGCAAAT CATCATCATCACCATCATCACCATCACCACCACCGCAACCAAGCAAATCT TGCTAACTGGCTGCAGAATCGAGATATGGCTGCATACGCAAATCAACAAG GAGCGCAACCTCAAAACCAGAACGCTTTCAACCCCGGTCTTCCTGGTCCA AACGCGATTGCGCACATGCAACTCCGCGCACGTCGCCGTGGTGCGTTTGC TGGATTGCGTCAATATCCTCCCATGTACCGAGTGCGCCTCCCACCGTTGA ACAATGCTGCGAATGCGATGAATAACACACCAAATCAGAATGCAAACCCG ACGACGCTTGGCCAACCGCCGACTAGTGGCTCACCAGAGCAAGCAGCGGC GTCAAGTCACGCAAACGCACCAAATCAGCCGAACATTCCTCAGCAAGGGA CGGCTGGCTCGTCATCAGCCACTGCGGCAGCCTCATCCTCGAGTACGCCA AACCCGTTTGCTTCGGTTCAAACGGCGAGTTCATCTAGGGGTCCTGCCGT GAGCCATGCGCAGGCGAGCTCGTCTGGCTCGAGTTCGGTTCGTGCTGAGT CGCAAGTACCGCGGGCGGCTCAGACTAACCACTTGTCGGCGACCAGCGCT GCGATCCAGATGGCGTTGGGTTATCCACTTGGCACCGGTGCTCAGGCGCT ACCTCTAGAACGCTTGTTTGAGATTCAAAGGCAGATTGAGGTTTTGCGAA GCGAGGTGCAAAGTTTAGTTCTATACGCTACGGAGGCTCAATTGAGTGCT ATGGAGAGTGAGGAGCAGCAGCAGAATGACGCTCAGGAATCTAGCGAAGT TGCAGCTAGCGAAGGACAAAACACAACGACAAATGATGTGGCACAAGCGA GTGCGTCTGTCGGCGCAAGCAGTACTGACGCTGCTAATGCTGCAAGTGCA GTGGAAAGTACTCAGAACGTTGCAGCTGATGCTGGCGCGGAACAAGGCGA CGAAGCAGAGCAAGAAGTGACTGAGAACGGAAGTGGAGTGAGGAATGAGG AGGAGGACTCGGAAGCAGAAAGAATTCGACGACGGAGAATTGAGTTTCTT GAGCGGACAAGTCGTAGTTAA back to topprotein sequence of Ggra8212.t1 >Ggra8212.t1 ID=Ggra8212.t1|Name=Ggra8212.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=757bp
MALVSVLLIWRLTQLIFLGPLRFRELERLHLRARDAIIEYCFAISVFRDD FNTRFVALIMTLLLLKSLHWLAKDRTDYLEEQLRCPLRTHIRLVGLLMLL AFLDCFLAATCIQATLQSNGRSMFVLFSFEFTLLFIELAANVFQYIFFLI DQRMDGRWASKGVFSFYAELLCDLSTLTIYIVFFIYVQIYYSFPYHIIRE FYVTLSKFQRKCADFLRYRRVVANMHEVVDEVTEEELQQGDRTCIICREE MESAIKLVCGHIFHRRCLENWLKRQLSCPTCRATIDVNRGARNREGSANQ NQNGNQQQPAANAAGGQAVTPNQAQRPLQPGQQPAQRQQQPPRPQAGQAG PQNANIGEAGARLLNFANQWINQVMNEAGMRPQANAQNPNAPNANNAQAN HHHHHHHHHHHRNQANLANWLQNRDMAAYANQQGAQPQNQNAFNPGLPGP NAIAHMQLRARRRGAFAGLRQYPPMYRVRLPPLNNAANAMNNTPNQNANP TTLGQPPTSGSPEQAAASSHANAPNQPNIPQQGTAGSSSATAAASSSSTP NPFASVQTASSSRGPAVSHAQASSSGSSSVRAESQVPRAAQTNHLSATSA AIQMALGYPLGTGAQALPLERLFEIQRQIEVLRSEVQSLVLYATEAQLSA MESEEQQQNDAQESSEVAASEGQNTTTNDVAQASASVGASSTDAANAASA VESTQNVAADAGAEQGDEAEQEVTENGSGVRNEEEDSEAERIRRRRIEFL ERTSRS* back to topmRNA from alignment at tig00000872_pilon:150741..153011- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra8212.t1 ID=Ggra8212.t1|Name=Ggra8212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2271bp|location=Sequence derived from alignment at tig00000872_pilon:150741..153011- (Gracilaria gracilis GNS1m male) ATGGCACTAGTCTCTGTATTACTAATTTGGCGTCTCACACAACTAATTTT
CCTCGGCCCTCTCCGCTTCCGGGAACTAGAGCGGTTACATCTTCGTGCTC
GTGATGCTATCATCGAGTACTGTTTCGCCATCTCTGTGTTCCGAGATGAT
TTCAACACACGTTTTGTTGCGCTCATCATGACTCTGTTGTTGTTAAAGAG
TCTACATTGGCTTGCAAAGGATCGAACCGATTATCTGGAGGAACAACTGC
GATGCCCGCTGCGTACTCACATTCGCCTTGTGGGCTTGCTCATGTTGCTC
GCGTTCCTCGACTGTTTTCTGGCGGCGACATGTATCCAAGCCACTTTGCA
AAGCAACGGCAGATCTATGTTTGTTCTATTTTCATTTGAGTTTACCCTAC
TTTTCATTGAACTCGCTGCGAATGTATTCCAGTATATCTTCTTCCTTATT
GACCAGCGAATGGATGGGCGATGGGCATCAAAGGGTGTCTTCTCTTTTTA
TGCGGAGCTCCTGTGTGATTTGTCAACGCTTACAATCTATATTGTCTTCT
TCATATACGTCCAGATTTACTACTCCTTCCCCTACCACATCATTCGAGAG
TTTTATGTGACGCTCAGTAAGTTCCAACGCAAGTGTGCTGATTTCCTTCG
CTACCGTCGTGTCGTGGCCAATATGCATGAGGTAGTGGATGAGGTCACGG
AAGAGGAACTTCAACAAGGAGATCGAACTTGTATCATTTGTCGAGAAGAA
ATGGAATCAGCTATTAAGCTGGTCTGTGGGCACATATTCCATCGCCGATG
CCTCGAGAACTGGCTGAAGCGTCAACTGAGCTGTCCAACGTGCAGAGCTA
CTATCGATGTGAACCGAGGTGCGCGAAATCGCGAAGGTTCCGCGAATCAG
AATCAAAACGGAAACCAACAACAACCAGCAGCAAACGCGGCTGGAGGGCA
AGCTGTGACTCCGAACCAAGCGCAGCGACCATTGCAACCGGGGCAGCAGC
CTGCTCAACGGCAACAGCAGCCTCCCCGACCACAAGCAGGTCAAGCAGGT
CCCCAAAATGCTAACATCGGCGAAGCCGGTGCTCGCTTGCTTAACTTTGC
TAACCAATGGATTAATCAGGTTATGAATGAAGCTGGGATGCGACCGCAGG
CTAATGCGCAAAATCCAAATGCTCCAAACGCTAACAATGCACAGGCAAAT
CATCATCATCACCATCATCACCATCACCACCACCGCAACCAAGCAAATCT
TGCTAACTGGCTGCAGAATCGAGATATGGCTGCATACGCAAATCAACAAG
GAGCGCAACCTCAAAACCAGAACGCTTTCAACCCCGGTCTTCCTGGTCCA
AACGCGATTGCGCACATGCAACTCCGCGCACGTCGCCGTGGTGCGTTTGC
TGGATTGCGTCAATATCCTCCCATGTACCGAGTGCGCCTCCCACCGTTGA
ACAATGCTGCGAATGCGATGAATAACACACCAAATCAGAATGCAAACCCG
ACGACGCTTGGCCAACCGCCGACTAGTGGCTCACCAGAGCAAGCAGCGGC
GTCAAGTCACGCAAACGCACCAAATCAGCCGAACATTCCTCAGCAAGGGA
CGGCTGGCTCGTCATCAGCCACTGCGGCAGCCTCATCCTCGAGTACGCCA
AACCCGTTTGCTTCGGTTCAAACGGCGAGTTCATCTAGGGGTCCTGCCGT
GAGCCATGCGCAGGCGAGCTCGTCTGGCTCGAGTTCGGTTCGTGCTGAGT
CGCAAGTACCGCGGGCGGCTCAGACTAACCACTTGTCGGCGACCAGCGCT
GCGATCCAGATGGCGTTGGGTTATCCACTTGGCACCGGTGCTCAGGCGCT
ACCTCTAGAACGCTTGTTTGAGATTCAAAGGCAGATTGAGGTTTTGCGAA
GCGAGGTGCAAAGTTTAGTTCTATACGCTACGGAGGCTCAATTGAGTGCT
ATGGAGAGTGAGGAGCAGCAGCAGAATGACGCTCAGGAATCTAGCGAAGT
TGCAGCTAGCGAAGGACAAAACACAACGACAAATGATGTGGCACAAGCGA
GTGCGTCTGTCGGCGCAAGCAGTACTGACGCTGCTAATGCTGCAAGTGCA
GTGGAAAGTACTCAGAACGTTGCAGCTGATGCTGGCGCGGAACAAGGCGA
CGAAGCAGAGCAAGAAGTGACTGAGAACGGAAGTGGAGTGAGGAATGAGG
AGGAGGACTCGGAAGCAGAAAGAATTCGACGACGGAGAATTGAGTTTCTT
GAGCGGACAAGTCGTAGTTAA back to topCoding sequence (CDS) from alignment at tig00000872_pilon:150741..153011- >Ggra8212.t1 ID=Ggra8212.t1|Name=Ggra8212.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2271bp|location=Sequence derived from alignment at tig00000872_pilon:150741..153011- (Gracilaria gracilis GNS1m male) ATGGCACTAGTCTCTGTATTACTAATTTGGCGTCTCACACAACTAATTTT CCTCGGCCCTCTCCGCTTCCGGGAACTAGAGCGGTTACATCTTCGTGCTC GTGATGCTATCATCGAGTACTGTTTCGCCATCTCTGTGTTCCGAGATGAT TTCAACACACGTTTTGTTGCGCTCATCATGACTCTGTTGTTGTTAAAGAG TCTACATTGGCTTGCAAAGGATCGAACCGATTATCTGGAGGAACAACTGC GATGCCCGCTGCGTACTCACATTCGCCTTGTGGGCTTGCTCATGTTGCTC GCGTTCCTCGACTGTTTTCTGGCGGCGACATGTATCCAAGCCACTTTGCA AAGCAACGGCAGATCTATGTTTGTTCTATTTTCATTTGAGTTTACCCTAC TTTTCATTGAACTCGCTGCGAATGTATTCCAGTATATCTTCTTCCTTATT GACCAGCGAATGGATGGGCGATGGGCATCAAAGGGTGTCTTCTCTTTTTA TGCGGAGCTCCTGTGTGATTTGTCAACGCTTACAATCTATATTGTCTTCT TCATATACGTCCAGATTTACTACTCCTTCCCCTACCACATCATTCGAGAG TTTTATGTGACGCTCAGTAAGTTCCAACGCAAGTGTGCTGATTTCCTTCG CTACCGTCGTGTCGTGGCCAATATGCATGAGGTAGTGGATGAGGTCACGG AAGAGGAACTTCAACAAGGAGATCGAACTTGTATCATTTGTCGAGAAGAA ATGGAATCAGCTATTAAGCTGGTCTGTGGGCACATATTCCATCGCCGATG CCTCGAGAACTGGCTGAAGCGTCAACTGAGCTGTCCAACGTGCAGAGCTA CTATCGATGTGAACCGAGGTGCGCGAAATCGCGAAGGTTCCGCGAATCAG AATCAAAACGGAAACCAACAACAACCAGCAGCAAACGCGGCTGGAGGGCA AGCTGTGACTCCGAACCAAGCGCAGCGACCATTGCAACCGGGGCAGCAGC CTGCTCAACGGCAACAGCAGCCTCCCCGACCACAAGCAGGTCAAGCAGGT CCCCAAAATGCTAACATCGGCGAAGCCGGTGCTCGCTTGCTTAACTTTGC TAACCAATGGATTAATCAGGTTATGAATGAAGCTGGGATGCGACCGCAGG CTAATGCGCAAAATCCAAATGCTCCAAACGCTAACAATGCACAGGCAAAT CATCATCATCACCATCATCACCATCACCACCACCGCAACCAAGCAAATCT TGCTAACTGGCTGCAGAATCGAGATATGGCTGCATACGCAAATCAACAAG GAGCGCAACCTCAAAACCAGAACGCTTTCAACCCCGGTCTTCCTGGTCCA AACGCGATTGCGCACATGCAACTCCGCGCACGTCGCCGTGGTGCGTTTGC TGGATTGCGTCAATATCCTCCCATGTACCGAGTGCGCCTCCCACCGTTGA ACAATGCTGCGAATGCGATGAATAACACACCAAATCAGAATGCAAACCCG ACGACGCTTGGCCAACCGCCGACTAGTGGCTCACCAGAGCAAGCAGCGGC GTCAAGTCACGCAAACGCACCAAATCAGCCGAACATTCCTCAGCAAGGGA CGGCTGGCTCGTCATCAGCCACTGCGGCAGCCTCATCCTCGAGTACGCCA AACCCGTTTGCTTCGGTTCAAACGGCGAGTTCATCTAGGGGTCCTGCCGT GAGCCATGCGCAGGCGAGCTCGTCTGGCTCGAGTTCGGTTCGTGCTGAGT CGCAAGTACCGCGGGCGGCTCAGACTAACCACTTGTCGGCGACCAGCGCT GCGATCCAGATGGCGTTGGGTTATCCACTTGGCACCGGTGCTCAGGCGCT ACCTCTAGAACGCTTGTTTGAGATTCAAAGGCAGATTGAGGTTTTGCGAA GCGAGGTGCAAAGTTTAGTTCTATACGCTACGGAGGCTCAATTGAGTGCT ATGGAGAGTGAGGAGCAGCAGCAGAATGACGCTCAGGAATCTAGCGAAGT TGCAGCTAGCGAAGGACAAAACACAACGACAAATGATGTGGCACAAGCGA GTGCGTCTGTCGGCGCAAGCAGTACTGACGCTGCTAATGCTGCAAGTGCA GTGGAAAGTACTCAGAACGTTGCAGCTGATGCTGGCGCGGAACAAGGCGA CGAAGCAGAGCAAGAAGTGACTGAGAACGGAAGTGGAGTGAGGAATGAGG AGGAGGACTCGGAAGCAGAAAGAATTCGACGACGGAGAATTGAGTTTCTT GAGCGGACAAGTCGTAGTTAA back to top
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