Ggra7292.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7292.t1
Unique NameGgra7292.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:647909..648340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7292Ggra7292Gracilaria gracilis GNS1m malegenetig00000871_pilon 647909..648340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7292.t1Ggra7292.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 647909..648340 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7292.t1.start1Ggra7292.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 647909..647911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7292.t1.CDS1Ggra7292.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 647909..648227 +
Ggra7292.t1.CDS2Ggra7292.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 648285..648340 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7292.t1.exon1Ggra7292.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 647909..648227 +
Ggra7292.t1.exon2Ggra7292.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 648285..648340 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7292.t1.intron1Ggra7292.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 648228..648284 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7292.t1.stop1Ggra7292.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 648338..648340 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7292.t1 ID=Ggra7292.t1|Name=Ggra7292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=125bp
MAGYQSKYQVKPLEATLIPWITAFRSTVRRENSREYFLRMETKATAIFLR
HEEGFHSRHNLPFIPKSELSITISATALAVFTTFDKVGRENRVVASVMMY
LTFDGPERAQSAKMTMSTSLNEDG*
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spliced messenger RNA

>Ggra7292.t1 ID=Ggra7292.t1|Name=Ggra7292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000871_pilon:647909..648340+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGATATCAGAGCAAGTATCAAGTGAAACCCCTTGAAGCAACGCT
GATACCATGGATAACTGCATTTCGATCAACAGTCAGGCGAGAAAATAGCC
GAGAATATTTCCTTCGTATGGAAACAAAGGCCACAGCAATCTTTCTTCGT
CATGAAGAGGGTTTCCACTCACGCCATAACCTACCCTTCATTCCGAAGTC
GGAGTTATCCATCACAATTTCTGCGACAGCTTTGGCCGTGTTCACGACGT
TCGATAAAGTTGGTCGTGAGAACAGAGTGGTAGCATCAGTAATGATGTAT
TTGACGTTCGACGGACCCGAAAGGGCACAGAGCGCGAAAATGACTATGTC
CACTTCCTTGAATGAAGACGGTTGA
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protein sequence of Ggra7292.t1

>Ggra7292.t1 ID=Ggra7292.t1|Name=Ggra7292.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=125bp
MAGYQSKYQVKPLEATLIPWITAFRSTVRRENSREYFLRMETKATAIFLR
HEEGFHSRHNLPFIPKSELSITISATALAVFTTFDKVGRENRVVASVMMY
LTFDGPERAQSAKMTMSTSLNEDG*
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mRNA from alignment at tig00000871_pilon:647909..648340+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7292.t1 ID=Ggra7292.t1|Name=Ggra7292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp|location=Sequence derived from alignment at tig00000871_pilon:647909..648340+ (Gracilaria gracilis GNS1m male)
ATGGCCGGATATCAGAGCAAGTATCAAGTGAAACCCCTTGAAGCAACGCT
GATACCATGGATAACTGCATTTCGATCAACAGTCAGGCGAGAAAATAGCC
GAGAATATTTCCTTCGTATGGAAACAAAGGCCACAGCAATCTTTCTTCGT
CATGAAGAGGGTTTCCACTCACGCCATAACCTACCCTTCATTCCGAAGTC
GGAGTTATCCATCACAATTTCTGCGACAGCTTTGGCCGTGTTCACGACGT
TCGATAAAGTTGGTCGTGAGAACAGAGTGGTAGCATCAGTAATGATGTAT
TTGACGTTCGACGGACCCGGTAGGTCTTCATTCAATTCACAAAATCTCCT
TACGAATCGTTCTGACTTCTCTATAGAAAGGGCACAGAGCGCGAAAATGA
CTATGTCCACTTCCTTGAATGAAGACGGTTGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:647909..648340+

>Ggra7292.t1 ID=Ggra7292.t1|Name=Ggra7292.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=375bp|location=Sequence derived from alignment at tig00000871_pilon:647909..648340+ (Gracilaria gracilis GNS1m male)
ATGGCCGGATATCAGAGCAAGTATCAAGTGAAACCCCTTGAAGCAACGCT
GATACCATGGATAACTGCATTTCGATCAACAGTCAGGCGAGAAAATAGCC
GAGAATATTTCCTTCGTATGGAAACAAAGGCCACAGCAATCTTTCTTCGT
CATGAAGAGGGTTTCCACTCACGCCATAACCTACCCTTCATTCCGAAGTC
GGAGTTATCCATCACAATTTCTGCGACAGCTTTGGCCGTGTTCACGACGT
TCGATAAAGTTGGTCGTGAGAACAGAGTGGTAGCATCAGTAATGATGTAT
TTGACGTTCGACGGACCCGAAAGGGCACAGAGCGCGAAAATGACTATGTC
CACTTCCTTGAATGAAGACGGTTGA
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