Ggra7256.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7256.t1
Unique NameGgra7256.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Homology
BLAST of Ggra7256.t1 vs. uniprot
Match: A0A2V3J103 (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J103_9FLOR)

HSP 1 Score: 297 bits (761), Expect = 4.300e-98
Identity = 165/278 (59.35%), Postives = 202/278 (72.66%), Query Frame = 0
Query:    1 MAFLSGPPPIPLNTPGRQARSVCRHRPPIPRQARVVFSALIDEKKALSEPESNNLTDAPNLRTDEEQNQSPDS-FQKEPRAPQPPRAYSPNRSRNNF-ARPRFEADPDATYYTKCSKCFAAYELDPSVLGTGKKVACSVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQRKDRGRYSGRRR----DRQPA-GRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDADGRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVRPGRRNS 271
            MAFLSGPP IP N PGR ARSVC +RPP+PR  RV FSALIDE K LSEP  + LT+   L  D  +   PDS    E R+   P   + +R    F + PRF  DP+A YYTKC+KC AAYELDP VLG G++VACSVC+NEWFQKP+RL+ +RETE+F+EYPMDRK E L+R  + R  G RR    DR+P   +TFSVFIGNLP+SV+E+EL  +IS+VV PKR+++V D DG SKG+AFADV   EEVDQ+VR+LD T + GR IAVRPG++NS
Sbjct:    2 MAFLSGPPLIPYNVPGRTARSVCSYRPPVPRPPRVFFSALIDESKPLSEPPRDLLTEP--LHRDLPKESEPDSALPPEQRSVARPSRPTHSRDPRRFESPPRFTPDPNAVYYTKCAKCSAAYELDPLVLGNGRRVACSVCSNEWFQKPDRLFKMRETEQFSEYPMDRKAELLERNQQNRARGGRRRDTRDRRPTYTKTFSVFIGNLPYSVTEQELTELISSVVKPKRISIVTDQDGNSKGFAFADVQSEEEVDQIVRSLDATRIAGRTIAVRPGKKNS 277          
BLAST of Ggra7256.t1 vs. uniprot
Match: R7QQ59 (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ59_CHOCR)

HSP 1 Score: 160 bits (404), Expect = 4.530e-44
Identity = 118/298 (39.60%), Postives = 156/298 (52.35%), Query Frame = 0
Query:    2 AFLSGPPPIPLNTPGRQARSVCRHRPPIPRQ-ARVVFSALIDEKKALSEPESNNLTDAPNLRTDEEQNQSPDSFQKEPRAPQPPRAYSPNRSRN--NFARPRFEADPDATYYTKCSKCFAAYELDPSVLGT-GKKVACSVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQRKDR--------------GRYSGRRRD--------RQPAGRTFS---VFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDADGRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVRPGRRN 270
            AFL  P    L+  G +   +C  RP   RQ ARV  SA IDE      P ++++   P  R   ++             P   R   P  S +     RP F  DP ATY+TKC  C AAY+LDP   G  GKKVACSVC N+WFQ+ +RL TLR+ ++F EYP+D+KDE ++++ +               R  G RRD        R+   R FS   +FIGNLPF+  +E+L+ ++  VV   RVA++ D  GRSKG+AFADV   E V   V  LD   + GR I VR GR+N
Sbjct:    3 AFLPTPGAPILSGRGTRGAQICSRRPAPSRQPARVYVSAAIDEA-----PPNDSI---PVPRPPPQRXXXXXXXXXXAPTPYIYRGERPRPSGDYRGAPRPAFIPDPTATYFTKCGSCQAAYKLDPDFPGPRGKKVACSVCGNQWFQRADRLMTLRQGDQFKEYPVDQKDELMEKQQQLRMERFRARSNDGGDRRGGYRRDGPREGQGARRSNSRNFSPHSLFIGNLPFNTEQEDLERVVGQVVEFTRVAIIRDPTGRSKGFAFADVKSEEAVQMAVSKLDGKELGGRAITVREGRKN 292          
BLAST of Ggra7256.t1 vs. uniprot
Match: A0A8J2SPH7 (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPH7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.000e-21
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 0
Query:  102 EADPDATYYTKCSKCFAAYELDPSVLG--TGKKVACSVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQR-KDRGRYSGRRRDRQPAGRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDADGRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVRPGR 268
            + D D  +   C  C A Y +D  +LG   G KV C VC N WFQ   R+ TL +  E  EY  ++  E + + K R + +  R  R+    T  +F+ NLPF  S++++ A+ + V       VV+D DGRS+GY F ++    + ++L+     + V GR++ VRPG+
Sbjct:   93 DTDEDVQHIITCGSCKAVYAIDKDILGKGAGAKVQCEVCGNVWFQATARVNTLFDGFELKEYDAEKAQEAIDKQKARAKEAADRPPRKRGAAT--LFVANLPFRYSDDDVVALFAEVAPITSAQVVMDDDGRSRGYGFVEIEVAADAERLISEFHGSDVGGRDLIVRPGK 260          
BLAST of Ggra7256.t1 vs. uniprot
Match: A0A7S3TR26 (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TR26_EMIHU)

HSP 1 Score: 97.4 bits (241), Expect = 5.590e-21
Identity = 53/163 (32.52%), Postives = 91/163 (55.83%), Query Frame = 0
Query:  110 YTKCSKCFAAYELDPSVLGTGKKVAC--SVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQRKDRGRYSGRRRDRQPAGRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDADGRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVRPGRRN 270
            +  C++C A +E+D +   TG++V C  + C +EWFQ  +RL TL    E  EYP + KD     K            +P GR F++F+GNL +SV+E++L+ +   +    +V ++ D DGR +G+ F ++ +     + V+ LD   ++GR+I V  G++N
Sbjct:   36 FVTCARCKATFEVDEADFATGRQVRCGGTGCDHEWFQTADRLQTLPNGMELVEYPQEMKDRIAAGKSA----------EPVGR-FNIFVGNLAYSVAEDDLREVFEGIGSVAKVIIMTDDDGRPRGFGFVNMEEEAAGARAVKELDGYELQGRSITVSEGKQN 187          
BLAST of Ggra7256.t1 vs. uniprot
Match: A0A6H5K2C5 (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.760e-20
Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = 0
Query:  110 YTKCSKCFAAYELDPSVLGTGKKVACSVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQRKDRGRYSGRRRDRQPAGRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDADGRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVRPGRRNS 271
            Y KC KC A Y ++  VLG G+ + CSVC N WFQ  ER  TL E     ++  DR     +      ++G           F++F+GN+PFSVSE++L AI  N    K  A+V D +G S+GY    +   E+  + ++AL+   ++GR++ V+ G  NS
Sbjct:  145 YVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRVAATAEAAKN--FAG-----------FNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNS 293          
BLAST of Ggra7256.t1 vs. uniprot
Match: A0A7S1TD30 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD30_9RHOD)

HSP 1 Score: 94.7 bits (234), Expect = 2.030e-19
Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = 0
Query:  108 TYYTKCSKCFAAYELDPSVLGT-GKKVACSVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQR-KDRGRYSGRRRDRQPAGRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDADGRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVRPG 267
            T YT+C +C + + +    LG  G+KV C VC + WFQ   RL  L E E   +     +D  ++R K R R +         G  F++F+GNLPFSVSE++L+ I S     +RV +    +GRS+G+AF DV   E++   +  +    V GR ++VR G
Sbjct:   99 TTYTECVRCGSKFAVSDRELGDKGRKVQCGVCKHVWFQHTNRLSELAEGESLRDMTPAEQDIAIERTKTRSRRATSDAGASEGGSQFTLFVGNLPFSVSEDDLRVIFSQHCKVQRVHIAT-TEGRSRGFAFVDVASEEDMKLAIEKVSGMDVGGREVSVRQG 259          
BLAST of Ggra7256.t1 vs. uniprot
Match: A0A6U4MCT9 (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MCT9_HEMAN)

HSP 1 Score: 93.6 bits (231), Expect = 5.350e-19
Identity = 54/157 (34.39%), Postives = 88/157 (56.05%), Query Frame = 0
Query:  110 YTKCSKCFAAYELDPSVLGTGKKVACSVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQRKDRGRYSGRRRDRQPAGRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVD-ADGRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVR 265
            Y  C  C A+Y LD   LG G+KV C+VC + WFQ   RL T+R +++   +P++   EF +R+        R DR+ A    ++F+GN+PFS++E++LK +         ++++ D A GR KGY F D  + +  +  +  +D   V GR +AV+
Sbjct:  100 YATCGTCKASYILDLEELGAGRKVKCAVCDHTWFQSAARLQTVRSSDKVQPFPVE---EFKERQKALGNVVTRHDRKGA---VTLFVGNMPFSITEDKLKGVFEEYGEVASISIICDPATGRPKGYGFVDYVEKDCGEVAMNQIDGMLVDGRELAVK 250          
BLAST of Ggra7256.t1 vs. uniprot
Match: A0A7S0XJR6 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJR6_9RHOD)

HSP 1 Score: 89.0 bits (219), Expect = 1.910e-17
Identity = 57/182 (31.32%), Postives = 90/182 (49.45%), Query Frame = 0
Query:  111 TKCSKCFAAYELDPSVLG-TGKKVACSVCANEWFQKPERLYTLRETE--EFTEYPMDRKDEFLQRKDRGRYSGRRRDRQPA------------------GRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDAD-GRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVRPGRRN 270
            T C +C A YE+D   LG  G++V CSVC + WFQ+   L  L   +  E  +YP +R+D   +       +G R  +Q                    G+ F+ F+GNLP+ +++++L+ +         V +  DA+ GRSKGY F +    E +D ++  LD   + GR ++ RPG RN
Sbjct:   69 TTCGRCEAVYEIDRGALGRNGRRVRCSVCGHAWFQQTRTLKPLEVPDDMELIDYPQERRDMIAK-------NGIRAPQQXXXXXXXXXXXXXXXXXMRRGQQFTAFVGNLPYEITQDQLRDLCQAQGKVASVKLATDAESGRSKGYGFVEFESKEVLDHVIGNLDGVEMFGRKLSFRPGNRN 243          
BLAST of Ggra7256.t1 vs. uniprot
Match: L1IF02 (RRM domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IF02_GUITC)

HSP 1 Score: 88.2 bits (217), Expect = 2.320e-17
Identity = 56/157 (35.67%), Postives = 83/157 (52.87%), Query Frame = 0
Query:  110 YTKCSKCFAAYELDPSVLGT-GKKVACSVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQRKDRGRYSGRRRDRQPAGRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDAD-GRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAV 264
            YT C KC A Y ++P+ LG+ G+KV CSVC N+WFQ   RL        F  +P+    +  Q   +G     R DR+ A   F++F+GNLPF +SE EL+A+         V+++ D + GR +G+ F D    +     V  L+   + GR I+V
Sbjct:   55 YTTCGKCGAVYVINPADLGSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGA---FTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISV 208          
BLAST of Ggra7256.t1 vs. uniprot
Match: A0A7S0J785 (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J785_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 7.530e-15
Identity = 52/156 (33.33%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  113 CSKCFAAYELDPSVLGTGKKVACSVCANEWFQKPERLYTLRETEEFTEYPMDRKDEFLQRKDRGRYSGRRRDRQPAGRTFSVFIGNLPFSVSEEELKAIISNVVVPKRVAVVVDADGRSKGYAFADVYKGEEVDQLVRALDNTSVKGRNIAVRPGR 268
            C  C A+YE+  S +G G++V CS C + W+Q   RL +L    E  +YP   K          R          AG  F  ++GNLPF  SEEEL+ +         V ++VD DGR +G+ F ++ K E+    V AL+   + GR + V  G+
Sbjct:   76 CGTCKASYEIRKSDVGEGRRVKCSNCGHTWYQTAARLSSLPRAMELIDYPAAMK---------ARLEAGLPAEMVAG--FRAYVGNLPFGTSEEELEQLFEPFGNIVGVDILVDEDGRPRGFGFVNLEKEEDGKAAVEALNGHKLNGRPLTVSEGK 220          
The following BLAST results are available for this feature:
BLAST of Ggra7256.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1034.300e-9859.35Putative RNA-binding protein RbpE n=1 Tax=Gracilar... [more]
R7QQ594.530e-4439.60RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A8J2SPH72.000e-2133.53Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S3TR265.590e-2132.52Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A6H5K2C51.760e-2035.80RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1TD302.030e-1935.80Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A6U4MCT95.350e-1934.39Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0XJR61.910e-1731.32Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
L1IF022.320e-1735.67RRM domain-containing protein n=1 Tax=Guillardia t... [more]
A0A7S0J7857.530e-1533.33Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 193..265
e-value: 1.7E-13
score: 60.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 194..262
e-value: 9.2E-12
score: 44.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 192..269
score: 14.214708
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 148..271
e-value: 9.8E-18
score: 66.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..100
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 183..270
NoneNo IPR availableCDDcd00590RRM_SFcoord: 194..265
e-value: 5.50691E-12
score: 58.0853
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 166..266

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:484352..485167 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7256.t1Ggra7256.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 484352..485167 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7256.t1 ID=Ggra7256.t1|Name=Ggra7256.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MAFLSGPPPIPLNTPGRQARSVCRHRPPIPRQARVVFSALIDEKKALSEP
ESNNLTDAPNLRTDEEQNQSPDSFQKEPRAPQPPRAYSPNRSRNNFARPR
FEADPDATYYTKCSKCFAAYELDPSVLGTGKKVACSVCANEWFQKPERLY
TLRETEEFTEYPMDRKDEFLQRKDRGRYSGRRRDRQPAGRTFSVFIGNLP
FSVSEEELKAIISNVVVPKRVAVVVDADGRSKGYAFADVYKGEEVDQLVR
ALDNTSVKGRNIAVRPGRRNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf