Ggra1024.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1024.t1
Unique NameGgra1024.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:623482..624372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5722.XP_001583409.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K02218
KEGG Pathwayko04011,ko04392,map04011,map04392
Evalue3.38e-41
EggNOG OGsKOG1164@1|root,KOG1164@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1024Ggra1024Gracilaria gracilis GNS1m malegenetig00000027_pilon 623482..624372 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1024.t1.stop1Ggra1024.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 623482..623484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1024.t1.CDS1Ggra1024.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 623482..624372 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1024.t1.exon1Ggra1024.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 623482..624372 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1024.t1.start1Ggra1024.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 624370..624372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1024.t1Ggra1024.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 623482..624372 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1024.t1 ID=Ggra1024.t1|Name=Ggra1024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MGLSRNEKINNTYRIRDKLDDGGEGNVYSARDDDGRNYAVKVCRGSTSLR
REYQAYRRLGCIDLDRLHLPRIYYYSNSYNRQSVMVMTRFHTSLDSLRRE
LGGKLSMPTVLQIGTKVVRMLKYVHSKGILHGDVKPQNIMLKRGSSGESK
LFLVDFGCSFSYLREDDSSRHVSDSDVGFYGTYLFASPRAHAGRRQSRKD
DLQSLTYMLVYLATGTLPWKHLDDTERYADILGSKTQTSTAALCSGLQGL
AEFAGKIWGLTFEEKPDYLSLLRILDRAIFELNGTHGVDYDWDNRD*
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spliced messenger RNA

>Ggra1024.t1 ID=Ggra1024.t1|Name=Ggra1024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000027_pilon:623482..624372- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTAAGCCGCAACGAAAAGATTAACAACACGTACCGTATTCGTGA
CAAGCTCGATGACGGTGGGGAGGGAAACGTATACTCTGCCAGGGACGACG
ATGGTCGCAATTATGCCGTGAAAGTTTGTCGAGGATCTACTAGTTTGCGG
CGCGAGTATCAAGCGTATAGGCGTCTGGGATGCATTGATCTTGACCGACT
ACATCTTCCTCGAATATACTACTACTCAAACTCGTATAACCGACAAAGCG
TCATGGTAATGACTCGATTTCATACTTCGCTTGATAGCCTGAGACGCGAG
CTGGGGGGTAAACTCTCTATGCCAACCGTTCTGCAGATCGGAACTAAGGT
CGTGCGCATGCTCAAGTACGTTCACTCGAAAGGCATCCTTCACGGTGATG
TGAAGCCGCAAAACATTATGCTGAAGAGGGGAAGTAGTGGTGAAAGCAAA
TTATTCTTGGTTGACTTTGGTTGTTCGTTTAGCTATCTTCGTGAGGACGA
TAGCTCTCGCCATGTGAGCGATTCAGATGTGGGCTTCTATGGCACTTATC
TGTTCGCTTCGCCTCGGGCGCATGCAGGGCGGCGCCAAAGTCGAAAGGAT
GATCTGCAATCGCTAACATACATGTTGGTATATCTGGCGACAGGAACGCT
CCCCTGGAAGCATTTGGACGACACCGAGCGTTATGCAGACATATTGGGTT
CGAAAACCCAAACTTCTACTGCGGCGCTGTGCTCCGGACTTCAAGGATTG
GCAGAGTTTGCAGGAAAGATTTGGGGTCTTACTTTCGAAGAAAAACCGGA
TTATCTATCGTTGTTACGTATACTAGATCGCGCTATTTTCGAGCTGAACG
GAACTCATGGTGTTGATTATGATTGGGATAATCGGGACTAA
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protein sequence of Ggra1024.t1

>Ggra1024.t1 ID=Ggra1024.t1|Name=Ggra1024.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MGLSRNEKINNTYRIRDKLDDGGEGNVYSARDDDGRNYAVKVCRGSTSLR
REYQAYRRLGCIDLDRLHLPRIYYYSNSYNRQSVMVMTRFHTSLDSLRRE
LGGKLSMPTVLQIGTKVVRMLKYVHSKGILHGDVKPQNIMLKRGSSGESK
LFLVDFGCSFSYLREDDSSRHVSDSDVGFYGTYLFASPRAHAGRRQSRKD
DLQSLTYMLVYLATGTLPWKHLDDTERYADILGSKTQTSTAALCSGLQGL
AEFAGKIWGLTFEEKPDYLSLLRILDRAIFELNGTHGVDYDWDNRD*
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mRNA from alignment at tig00000027_pilon:623482..624372-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1024.t1 ID=Ggra1024.t1|Name=Ggra1024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000027_pilon:623482..624372- (Gracilaria gracilis GNS1m male)
ATGGGGCTAAGCCGCAACGAAAAGATTAACAACACGTACCGTATTCGTGA
CAAGCTCGATGACGGTGGGGAGGGAAACGTATACTCTGCCAGGGACGACG
ATGGTCGCAATTATGCCGTGAAAGTTTGTCGAGGATCTACTAGTTTGCGG
CGCGAGTATCAAGCGTATAGGCGTCTGGGATGCATTGATCTTGACCGACT
ACATCTTCCTCGAATATACTACTACTCAAACTCGTATAACCGACAAAGCG
TCATGGTAATGACTCGATTTCATACTTCGCTTGATAGCCTGAGACGCGAG
CTGGGGGGTAAACTCTCTATGCCAACCGTTCTGCAGATCGGAACTAAGGT
CGTGCGCATGCTCAAGTACGTTCACTCGAAAGGCATCCTTCACGGTGATG
TGAAGCCGCAAAACATTATGCTGAAGAGGGGAAGTAGTGGTGAAAGCAAA
TTATTCTTGGTTGACTTTGGTTGTTCGTTTAGCTATCTTCGTGAGGACGA
TAGCTCTCGCCATGTGAGCGATTCAGATGTGGGCTTCTATGGCACTTATC
TGTTCGCTTCGCCTCGGGCGCATGCAGGGCGGCGCCAAAGTCGAAAGGAT
GATCTGCAATCGCTAACATACATGTTGGTATATCTGGCGACAGGAACGCT
CCCCTGGAAGCATTTGGACGACACCGAGCGTTATGCAGACATATTGGGTT
CGAAAACCCAAACTTCTACTGCGGCGCTGTGCTCCGGACTTCAAGGATTG
GCAGAGTTTGCAGGAAAGATTTGGGGTCTTACTTTCGAAGAAAAACCGGA
TTATCTATCGTTGTTACGTATACTAGATCGCGCTATTTTCGAGCTGAACG
GAACTCATGGTGTTGATTATGATTGGGATAATCGGGACTAA
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Coding sequence (CDS) from alignment at tig00000027_pilon:623482..624372-

>Ggra1024.t1 ID=Ggra1024.t1|Name=Ggra1024.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000027_pilon:623482..624372- (Gracilaria gracilis GNS1m male)
ATGGGGCTAAGCCGCAACGAAAAGATTAACAACACGTACCGTATTCGTGA
CAAGCTCGATGACGGTGGGGAGGGAAACGTATACTCTGCCAGGGACGACG
ATGGTCGCAATTATGCCGTGAAAGTTTGTCGAGGATCTACTAGTTTGCGG
CGCGAGTATCAAGCGTATAGGCGTCTGGGATGCATTGATCTTGACCGACT
ACATCTTCCTCGAATATACTACTACTCAAACTCGTATAACCGACAAAGCG
TCATGGTAATGACTCGATTTCATACTTCGCTTGATAGCCTGAGACGCGAG
CTGGGGGGTAAACTCTCTATGCCAACCGTTCTGCAGATCGGAACTAAGGT
CGTGCGCATGCTCAAGTACGTTCACTCGAAAGGCATCCTTCACGGTGATG
TGAAGCCGCAAAACATTATGCTGAAGAGGGGAAGTAGTGGTGAAAGCAAA
TTATTCTTGGTTGACTTTGGTTGTTCGTTTAGCTATCTTCGTGAGGACGA
TAGCTCTCGCCATGTGAGCGATTCAGATGTGGGCTTCTATGGCACTTATC
TGTTCGCTTCGCCTCGGGCGCATGCAGGGCGGCGCCAAAGTCGAAAGGAT
GATCTGCAATCGCTAACATACATGTTGGTATATCTGGCGACAGGAACGCT
CCCCTGGAAGCATTTGGACGACACCGAGCGTTATGCAGACATATTGGGTT
CGAAAACCCAAACTTCTACTGCGGCGCTGTGCTCCGGACTTCAAGGATTG
GCAGAGTTTGCAGGAAAGATTTGGGGTCTTACTTTCGAAGAAAAACCGGA
TTATCTATCGTTGTTACGTATACTAGATCGCGCTATTTTCGAGCTGAACG
GAACTCATGGTGTTGATTATGATTGGGATAATCGGGACTAA
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