Ggra1073.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1073.t1
Unique NameGgra1073.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length512
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:106829..108364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ054CT
Preferred nameHEMA
PFAMsGlutR_N,GlutR_dimer,Shikimate_DH
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00149
KEGG koko:K02492
KEGG ReactionR04109
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008883,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0015994,GO:0015995,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue4.34e-162
EggNOG OGsCOG0373@1|root,2QQ1H@2759|Eukaryota
EC1.2.1.70
Descriptionglutamyl-tRNA reductase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1073Ggra1073Gracilaria gracilis GNS1m malegenetig00000868_pilon 106829..108364 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1073.t1.stop1Ggra1073.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 106829..106831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1073.t1.CDS1Ggra1073.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 106829..108364 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1073.t1.exon1Ggra1073.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 106829..108364 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1073.t1.start1Ggra1073.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 108362..108364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1073.t1Ggra1073.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 106829..108364 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1073.t1 ID=Ggra1073.t1|Name=Ggra1073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=512bp
MDAPTFVAPLLTASSFTTSRSLNTSRPIRRTVLVGARSWRAAQAAVKSGS
HSSPTNPDDRAAKRTTAASTQSAKPKEKKRSAASLGKVVVMGLSHHTATV
DVREKLSIPEAEWQSAAGRLCSLSAVSEAAVLSTCNRFEVYIVSDHPFQA
IQEVIAHLSSRSGLAVGQLRKHLFMLTEDEATWHLFRVSAGLDSLVIGEG
QILSQVKKCYELASEKGGFAGKILSRLLNIAVSAGKRVRSETGIAKGAVS
ISSAAVELAEMKSVQDVHVPLQHARVCIMGAGKMSRLLVQHLLSRNVTDI
TIVNRSMERAEELVKMFHGSDVKVKVWGSLLDVLAQSDIIFASTAAPEPI
VTRALLDECFDKNGRHMLIDISVPRNVSNDVNGMEGVLSYNVDDLKAVVA
KNQAKRRFLMLEAEGVLREEQTTFNNWHNSLGCIPAISKLQQRAESIRQD
EMERVRGKLASLSSSERKAVEQLSKGIINKMLHSPMVHLRGLDDMEERTQ
TLRNIEALFKL*
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spliced messenger RNA

>Ggra1073.t1 ID=Ggra1073.t1|Name=Ggra1073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00000868_pilon:106829..108364- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCCCCCACTTTTGTCGCGCCGCTATTGACGGCTTCGTCGTTCAC
CACCTCGCGATCCCTCAACACCAGCCGTCCAATTCGCCGCACTGTTCTGG
TCGGCGCCCGCTCATGGAGGGCCGCCCAGGCCGCCGTCAAGTCCGGGTCG
CATTCCTCACCCACCAACCCGGATGATCGTGCCGCCAAGCGAACCACCGC
CGCCTCCACCCAATCGGCAAAGCCCAAGGAGAAGAAGCGCTCTGCCGCCT
CATTGGGCAAGGTCGTTGTCATGGGCCTTTCCCACCACACTGCAACCGTC
GATGTTCGCGAGAAGCTCTCCATCCCGGAAGCTGAATGGCAGTCTGCTGC
CGGTCGCCTCTGCTCCTTGTCTGCCGTGTCAGAGGCCGCTGTTTTGTCTA
CTTGCAACCGTTTTGAAGTCTACATTGTTTCTGATCACCCCTTCCAGGCC
ATTCAGGAGGTTATTGCACACCTCTCATCTCGCAGCGGACTGGCTGTCGG
TCAGCTGCGCAAGCATCTTTTCATGCTCACTGAGGATGAGGCTACCTGGC
ATCTGTTCCGAGTCTCTGCCGGCCTTGACTCGCTTGTTATTGGCGAGGGT
CAGATTCTTTCTCAAGTGAAAAAGTGCTACGAACTGGCCAGTGAGAAGGG
TGGCTTTGCTGGAAAGATTCTTTCCCGCCTGTTAAATATTGCTGTCTCTG
CCGGTAAGCGCGTGCGATCGGAGACCGGAATTGCCAAGGGTGCCGTGTCT
ATTTCCAGTGCTGCCGTTGAACTCGCGGAGATGAAGAGCGTGCAGGACGT
ACATGTCCCTCTCCAGCATGCCCGTGTTTGCATCATGGGTGCCGGCAAGA
TGTCGCGTCTGCTTGTGCAACATCTGCTCTCGAGAAACGTCACTGATATC
ACCATTGTCAATCGCTCAATGGAGCGTGCAGAGGAGCTTGTCAAGATGTT
CCATGGGTCAGATGTCAAGGTCAAGGTATGGGGATCTCTGCTTGATGTTC
TTGCTCAGAGTGATATCATATTCGCATCTACTGCTGCCCCGGAACCTATT
GTTACAAGAGCTCTGCTTGACGAGTGCTTCGACAAGAATGGCCGACACAT
GCTCATTGATATTTCTGTCCCGCGGAATGTCAGCAACGATGTCAATGGCA
TGGAAGGAGTGTTGTCGTACAATGTTGACGATTTGAAGGCTGTCGTGGCC
AAGAATCAGGCCAAGAGACGATTCTTGATGCTGGAGGCTGAGGGCGTTTT
GAGGGAGGAACAGACTACTTTCAATAATTGGCACAACTCTCTAGGCTGCA
TCCCAGCCATTTCCAAACTTCAGCAGCGTGCGGAAAGCATTAGGCAAGAC
GAAATGGAGCGTGTTCGGGGCAAGCTAGCATCTCTATCTTCTAGTGAGAG
GAAGGCTGTGGAGCAACTTTCAAAGGGTATTATCAATAAGATGCTGCATT
CACCTATGGTTCATCTTCGAGGTCTTGATGATATGGAGGAAAGGACTCAA
ACGCTCCGAAACATCGAAGCATTGTTTAAGCTATAA
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protein sequence of Ggra1073.t1

>Ggra1073.t1 ID=Ggra1073.t1|Name=Ggra1073.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=512bp
MDAPTFVAPLLTASSFTTSRSLNTSRPIRRTVLVGARSWRAAQAAVKSGS
HSSPTNPDDRAAKRTTAASTQSAKPKEKKRSAASLGKVVVMGLSHHTATV
DVREKLSIPEAEWQSAAGRLCSLSAVSEAAVLSTCNRFEVYIVSDHPFQA
IQEVIAHLSSRSGLAVGQLRKHLFMLTEDEATWHLFRVSAGLDSLVIGEG
QILSQVKKCYELASEKGGFAGKILSRLLNIAVSAGKRVRSETGIAKGAVS
ISSAAVELAEMKSVQDVHVPLQHARVCIMGAGKMSRLLVQHLLSRNVTDI
TIVNRSMERAEELVKMFHGSDVKVKVWGSLLDVLAQSDIIFASTAAPEPI
VTRALLDECFDKNGRHMLIDISVPRNVSNDVNGMEGVLSYNVDDLKAVVA
KNQAKRRFLMLEAEGVLREEQTTFNNWHNSLGCIPAISKLQQRAESIRQD
EMERVRGKLASLSSSERKAVEQLSKGIINKMLHSPMVHLRGLDDMEERTQ
TLRNIEALFKL*
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mRNA from alignment at tig00000868_pilon:106829..108364-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1073.t1 ID=Ggra1073.t1|Name=Ggra1073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00000868_pilon:106829..108364- (Gracilaria gracilis GNS1m male)
ATGGATGCCCCCACTTTTGTCGCGCCGCTATTGACGGCTTCGTCGTTCAC
CACCTCGCGATCCCTCAACACCAGCCGTCCAATTCGCCGCACTGTTCTGG
TCGGCGCCCGCTCATGGAGGGCCGCCCAGGCCGCCGTCAAGTCCGGGTCG
CATTCCTCACCCACCAACCCGGATGATCGTGCCGCCAAGCGAACCACCGC
CGCCTCCACCCAATCGGCAAAGCCCAAGGAGAAGAAGCGCTCTGCCGCCT
CATTGGGCAAGGTCGTTGTCATGGGCCTTTCCCACCACACTGCAACCGTC
GATGTTCGCGAGAAGCTCTCCATCCCGGAAGCTGAATGGCAGTCTGCTGC
CGGTCGCCTCTGCTCCTTGTCTGCCGTGTCAGAGGCCGCTGTTTTGTCTA
CTTGCAACCGTTTTGAAGTCTACATTGTTTCTGATCACCCCTTCCAGGCC
ATTCAGGAGGTTATTGCACACCTCTCATCTCGCAGCGGACTGGCTGTCGG
TCAGCTGCGCAAGCATCTTTTCATGCTCACTGAGGATGAGGCTACCTGGC
ATCTGTTCCGAGTCTCTGCCGGCCTTGACTCGCTTGTTATTGGCGAGGGT
CAGATTCTTTCTCAAGTGAAAAAGTGCTACGAACTGGCCAGTGAGAAGGG
TGGCTTTGCTGGAAAGATTCTTTCCCGCCTGTTAAATATTGCTGTCTCTG
CCGGTAAGCGCGTGCGATCGGAGACCGGAATTGCCAAGGGTGCCGTGTCT
ATTTCCAGTGCTGCCGTTGAACTCGCGGAGATGAAGAGCGTGCAGGACGT
ACATGTCCCTCTCCAGCATGCCCGTGTTTGCATCATGGGTGCCGGCAAGA
TGTCGCGTCTGCTTGTGCAACATCTGCTCTCGAGAAACGTCACTGATATC
ACCATTGTCAATCGCTCAATGGAGCGTGCAGAGGAGCTTGTCAAGATGTT
CCATGGGTCAGATGTCAAGGTCAAGGTATGGGGATCTCTGCTTGATGTTC
TTGCTCAGAGTGATATCATATTCGCATCTACTGCTGCCCCGGAACCTATT
GTTACAAGAGCTCTGCTTGACGAGTGCTTCGACAAGAATGGCCGACACAT
GCTCATTGATATTTCTGTCCCGCGGAATGTCAGCAACGATGTCAATGGCA
TGGAAGGAGTGTTGTCGTACAATGTTGACGATTTGAAGGCTGTCGTGGCC
AAGAATCAGGCCAAGAGACGATTCTTGATGCTGGAGGCTGAGGGCGTTTT
GAGGGAGGAACAGACTACTTTCAATAATTGGCACAACTCTCTAGGCTGCA
TCCCAGCCATTTCCAAACTTCAGCAGCGTGCGGAAAGCATTAGGCAAGAC
GAAATGGAGCGTGTTCGGGGCAAGCTAGCATCTCTATCTTCTAGTGAGAG
GAAGGCTGTGGAGCAACTTTCAAAGGGTATTATCAATAAGATGCTGCATT
CACCTATGGTTCATCTTCGAGGTCTTGATGATATGGAGGAAAGGACTCAA
ACGCTCCGAAACATCGAAGCATTGTTTAAGCTATAA
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Coding sequence (CDS) from alignment at tig00000868_pilon:106829..108364-

>Ggra1073.t1 ID=Ggra1073.t1|Name=Ggra1073.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1536bp|location=Sequence derived from alignment at tig00000868_pilon:106829..108364- (Gracilaria gracilis GNS1m male)
ATGGATGCCCCCACTTTTGTCGCGCCGCTATTGACGGCTTCGTCGTTCAC
CACCTCGCGATCCCTCAACACCAGCCGTCCAATTCGCCGCACTGTTCTGG
TCGGCGCCCGCTCATGGAGGGCCGCCCAGGCCGCCGTCAAGTCCGGGTCG
CATTCCTCACCCACCAACCCGGATGATCGTGCCGCCAAGCGAACCACCGC
CGCCTCCACCCAATCGGCAAAGCCCAAGGAGAAGAAGCGCTCTGCCGCCT
CATTGGGCAAGGTCGTTGTCATGGGCCTTTCCCACCACACTGCAACCGTC
GATGTTCGCGAGAAGCTCTCCATCCCGGAAGCTGAATGGCAGTCTGCTGC
CGGTCGCCTCTGCTCCTTGTCTGCCGTGTCAGAGGCCGCTGTTTTGTCTA
CTTGCAACCGTTTTGAAGTCTACATTGTTTCTGATCACCCCTTCCAGGCC
ATTCAGGAGGTTATTGCACACCTCTCATCTCGCAGCGGACTGGCTGTCGG
TCAGCTGCGCAAGCATCTTTTCATGCTCACTGAGGATGAGGCTACCTGGC
ATCTGTTCCGAGTCTCTGCCGGCCTTGACTCGCTTGTTATTGGCGAGGGT
CAGATTCTTTCTCAAGTGAAAAAGTGCTACGAACTGGCCAGTGAGAAGGG
TGGCTTTGCTGGAAAGATTCTTTCCCGCCTGTTAAATATTGCTGTCTCTG
CCGGTAAGCGCGTGCGATCGGAGACCGGAATTGCCAAGGGTGCCGTGTCT
ATTTCCAGTGCTGCCGTTGAACTCGCGGAGATGAAGAGCGTGCAGGACGT
ACATGTCCCTCTCCAGCATGCCCGTGTTTGCATCATGGGTGCCGGCAAGA
TGTCGCGTCTGCTTGTGCAACATCTGCTCTCGAGAAACGTCACTGATATC
ACCATTGTCAATCGCTCAATGGAGCGTGCAGAGGAGCTTGTCAAGATGTT
CCATGGGTCAGATGTCAAGGTCAAGGTATGGGGATCTCTGCTTGATGTTC
TTGCTCAGAGTGATATCATATTCGCATCTACTGCTGCCCCGGAACCTATT
GTTACAAGAGCTCTGCTTGACGAGTGCTTCGACAAGAATGGCCGACACAT
GCTCATTGATATTTCTGTCCCGCGGAATGTCAGCAACGATGTCAATGGCA
TGGAAGGAGTGTTGTCGTACAATGTTGACGATTTGAAGGCTGTCGTGGCC
AAGAATCAGGCCAAGAGACGATTCTTGATGCTGGAGGCTGAGGGCGTTTT
GAGGGAGGAACAGACTACTTTCAATAATTGGCACAACTCTCTAGGCTGCA
TCCCAGCCATTTCCAAACTTCAGCAGCGTGCGGAAAGCATTAGGCAAGAC
GAAATGGAGCGTGTTCGGGGCAAGCTAGCATCTCTATCTTCTAGTGAGAG
GAAGGCTGTGGAGCAACTTTCAAAGGGTATTATCAATAAGATGCTGCATT
CACCTATGGTTCATCTTCGAGGTCTTGATGATATGGAGGAAAGGACTCAA
ACGCTCCGAAACATCGAAGCATTGTTTAAGCTATAA
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