Ggra1053.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1053.t1
Unique NameGgra1053.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:7091..8446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog52644.XP_010581684.1
Preferred nameRB1
PFAMsDUF3452,RB_A,RB_B,Rb_C
Max annot lvl33208|Metazoa
KEGG koko:K06618
KEGG Pathwayko01522,ko04110,ko04218,ko04934,ko05161,ko05165,ko05166,ko05167,ko05169,ko05200,ko05203,ko05212,ko05214,ko05215,ko05218,ko05219,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map01522,map04110,map04218,map04934,map05161,map05165,map05166,map05167,map05169,map05200,map05203,map05212,map05214,map05215,map05218,map05219,map05220,map05222,map05223,map05224,map05225,map05226
KEGG ModuleM00692
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000082,GO:0000083,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0000902,GO:0000904,GO:0000976,GO:0000987,GO:0001047,GO:0001067,GO:0001085,GO:0001102,GO:0001558,GO:0001894,GO:0001932,GO:0001933,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003170,GO:0003176,GO:0003179,GO:0003180,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005819,GO:0005856,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006469,GO:0006915,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007093,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007507,GO:0007517,GO:0007519,GO:0008104,GO:0008134,GO:0008150,GO:0008219,GO:0008285,GO:0008589,GO:0008608,GO:0009410,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010965,GO:0012501,GO:0014070,GO:0014706,GO:0015630,GO:0016043,GO:0016514,GO:0016604,GO:0016605,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019904,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030071,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030218,GO:0030518,GO:0030521,GO:0030522,GO:0031134,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031331,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031625,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0033613,GO:0033673,GO:0033993,GO:0034086,GO:0034088,GO:0034101,GO:0034349,GO:0034502,GO:0034613,GO:0035189,GO:0035257,GO:0035258,GO:0035295,GO:0035556,GO:0035914,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042551,GO:0042592,GO:0042692,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043353,GO:0043388,GO:0043401,GO:0043433,GO:0043549,GO:0043550,GO:0043565,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044798,GO:0044843,GO:0045445,GO:0045595,GO:0045596,GO:0045597,GO:0045637,GO:0045639,GO:0045649,GO:0045651,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045859,GO:0045862,GO:0045879,GO:0045892,GO:0045893,GO:0045930,GO:0045931,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048565,GO:0048583,GO:0048585,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0050678,GO:0050680,GO:0050681,GO:0050727,GO:0050728,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051338,GO:0051348,GO:0051402,GO:0051427,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055123,GO:0060249,GO:0060255,GO:0060341,GO:0060537,GO:0060538,GO:0060548,GO:0061061,GO:0061676,GO:0062033,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070603,GO:0070727,GO:0070887,GO:0070997,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071459,GO:0071466,GO:0071495,GO:0071695,GO:0071840,GO:0071922,GO:0071930,GO:0072359,GO:0080090,GO:0080134,GO:0090068,GO:0090230,GO:0090575,GO:0097159,GO:0097284,GO:0097718,GO:0098813,GO:0120036,GO:0140014,GO:0140110,GO:1901363,GO:1901800,GO:1901970,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902099,GO:1902101,GO:1902105,GO:1902107,GO:1902494,GO:1902679,GO:1902680,GO:1902806,GO:1902807,GO:1902903,GO:1902905,GO:1903047,GO:1903052,GO:1903053,GO:1903055,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903708,GO:1903827,GO:1903943,GO:1903944,GO:1904019,GO:1904026,GO:1904028,GO:1904035,GO:1904036,GO:1904760,GO:1904761,GO:1904949,GO:1905314,GO:1905634,GO:1905818,GO:1905820,GO:1990837,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000677,GO:2000679,GO:2001141,GO:2001252
Evalue2.25e-19
EggNOG OGsKOG1010@1|root,KOG1010@2759|Eukaryota,38FRX@33154|Opisthokonta,3BIHD@33208|Metazoa,3D06I@33213|Bilateria,48199@7711|Chordata,48Y0J@7742|Vertebrata,4GSHC@8782|Aves
DescriptionRetinoblastoma-associated protein
COG categoryD
BRITEko00000,ko00001,ko00002,ko01009,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1053Ggra1053Gracilaria gracilis GNS1m malegenetig00000868_pilon 7091..8446 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1053.t1.stop1Ggra1053.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 7091..7093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1053.t1.CDS1Ggra1053.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 7091..8446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1053.t1.exon1Ggra1053.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 7091..8446 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1053.t1.start1Ggra1053.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 8444..8446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1053.t1Ggra1053.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 7091..8446 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1053.t1 ID=Ggra1053.t1|Name=Ggra1053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=452bp
MLTPRSSPNFSRYALSTRPDALDALATVAAISPRYVTRPPTPNVAASPTT
ADDSRTMRWITTLTASRPETNSESCLTCPLEQVSTTDGLRKVTGGGRPLL
AIIDVGRRFSAALCTVLRDTNSDRHVREVLAVYFAAMEGILEKEKRRLSQ
QPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGRRDLQVFAVAYRAFDVSP
FELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVLQA
YNRDLIMQQNRTAPSTQEASPEEVVGSDDTAQGSESAENFAQASPVTPAQ
ERGASVDEDEVKGEAEVEDSSTPKLKEMEKPERMYGDHDARARVLDFFFE
KVFALAGTRTEELLRRLDLVHLRSQVWRSIKFALWCRWNLVINRHVDLII
LCVIYGVAKVQHIQLRFRTIVRHYHSPGPHERSNVPIQFAIGIGDSQHQP
V*
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spliced messenger RNA

>Ggra1053.t1 ID=Ggra1053.t1|Name=Ggra1053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000868_pilon:7091..8446- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGACACCTCGTTCGTCGCCAAACTTCTCCAGGTATGCGTTGTCCAC
TCGACCCGATGCCCTGGATGCCCTGGCGACTGTGGCTGCCATCTCGCCAC
GATATGTGACAAGGCCACCCACACCGAATGTAGCTGCGTCGCCAACGACG
GCAGATGATAGCCGAACTATGAGGTGGATTACAACCTTGACCGCGAGTCG
CCCAGAAACGAATAGCGAGTCCTGCCTGACGTGTCCGCTGGAGCAAGTAT
CCACGACGGACGGTCTGAGGAAGGTCACGGGCGGCGGTCGTCCACTACTG
GCTATCATTGATGTTGGTAGGCGCTTTTCCGCGGCATTGTGCACCGTTCT
CCGAGACACGAATTCCGATCGACACGTTCGTGAAGTACTGGCTGTTTATT
TTGCAGCTATGGAAGGAATCCTCGAAAAGGAGAAACGTCGGTTGAGTCAA
CAGCCGGAGAAGTTCTTGTCCAACGTACTTCACAACTACGTATTGCACAA
GAGCTTCCTTACGTTTGCGTGGGAAACCACTGCAGCAGCACATGGACGAA
GAGATCTCCAGGTGTTTGCGGTGGCATACCGAGCGTTCGATGTGTCACCG
TTTGAACTTACCAAAGCGTTGGATACATTCTGCATGCTTGTTCCCCAGAT
GCCAAGGTGTTTGGTACACCATTTAGTGTGTTGCGATGCGCGCATACTTG
AATGGATGGCATGGAGAAGCAAGTCACCGCTTGTGCAAGTACTTCAAGCG
TACAACAGAGACTTGATAATGCAACAGAACCGTACTGCACCAAGTACACA
AGAGGCTTCACCCGAAGAGGTAGTTGGTAGCGACGACACAGCGCAAGGAA
GCGAGTCGGCGGAGAATTTCGCGCAAGCTTCCCCGGTAACACCGGCACAA
GAGCGTGGTGCGTCGGTAGATGAAGATGAAGTGAAGGGTGAAGCTGAGGT
GGAAGATAGTAGTACACCAAAATTGAAAGAGATGGAAAAGCCCGAGCGGA
TGTACGGCGATCATGATGCACGAGCACGAGTGCTGGACTTTTTCTTCGAG
AAGGTGTTTGCGTTAGCTGGCACCAGAACCGAAGAACTGTTAAGAAGACT
TGACCTTGTTCATCTGAGATCACAGGTGTGGAGGAGCATCAAGTTCGCGC
TGTGGTGCAGGTGGAACCTGGTAATCAACAGGCATGTGGATTTGATCATC
CTGTGCGTGATCTACGGCGTGGCGAAGGTGCAGCACATTCAGCTGCGGTT
CCGCACGATTGTAAGACATTACCACAGCCCTGGACCACACGAACGAAGTA
ACGTTCCGATACAATTCGCCATCGGAATTGGTGACTCGCAACATCAGCCT
GTATGA
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protein sequence of Ggra1053.t1

>Ggra1053.t1 ID=Ggra1053.t1|Name=Ggra1053.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=452bp
MLTPRSSPNFSRYALSTRPDALDALATVAAISPRYVTRPPTPNVAASPTT
ADDSRTMRWITTLTASRPETNSESCLTCPLEQVSTTDGLRKVTGGGRPLL
AIIDVGRRFSAALCTVLRDTNSDRHVREVLAVYFAAMEGILEKEKRRLSQ
QPEKFLSNVLHNYVLHKSFLTFAWETTAAAHGRRDLQVFAVAYRAFDVSP
FELTKALDTFCMLVPQMPRCLVHHLVCCDARILEWMAWRSKSPLVQVLQA
YNRDLIMQQNRTAPSTQEASPEEVVGSDDTAQGSESAENFAQASPVTPAQ
ERGASVDEDEVKGEAEVEDSSTPKLKEMEKPERMYGDHDARARVLDFFFE
KVFALAGTRTEELLRRLDLVHLRSQVWRSIKFALWCRWNLVINRHVDLII
LCVIYGVAKVQHIQLRFRTIVRHYHSPGPHERSNVPIQFAIGIGDSQHQP
V*
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mRNA from alignment at tig00000868_pilon:7091..8446-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1053.t1 ID=Ggra1053.t1|Name=Ggra1053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000868_pilon:7091..8446- (Gracilaria gracilis GNS1m male)
ATGCTGACACCTCGTTCGTCGCCAAACTTCTCCAGGTATGCGTTGTCCAC
TCGACCCGATGCCCTGGATGCCCTGGCGACTGTGGCTGCCATCTCGCCAC
GATATGTGACAAGGCCACCCACACCGAATGTAGCTGCGTCGCCAACGACG
GCAGATGATAGCCGAACTATGAGGTGGATTACAACCTTGACCGCGAGTCG
CCCAGAAACGAATAGCGAGTCCTGCCTGACGTGTCCGCTGGAGCAAGTAT
CCACGACGGACGGTCTGAGGAAGGTCACGGGCGGCGGTCGTCCACTACTG
GCTATCATTGATGTTGGTAGGCGCTTTTCCGCGGCATTGTGCACCGTTCT
CCGAGACACGAATTCCGATCGACACGTTCGTGAAGTACTGGCTGTTTATT
TTGCAGCTATGGAAGGAATCCTCGAAAAGGAGAAACGTCGGTTGAGTCAA
CAGCCGGAGAAGTTCTTGTCCAACGTACTTCACAACTACGTATTGCACAA
GAGCTTCCTTACGTTTGCGTGGGAAACCACTGCAGCAGCACATGGACGAA
GAGATCTCCAGGTGTTTGCGGTGGCATACCGAGCGTTCGATGTGTCACCG
TTTGAACTTACCAAAGCGTTGGATACATTCTGCATGCTTGTTCCCCAGAT
GCCAAGGTGTTTGGTACACCATTTAGTGTGTTGCGATGCGCGCATACTTG
AATGGATGGCATGGAGAAGCAAGTCACCGCTTGTGCAAGTACTTCAAGCG
TACAACAGAGACTTGATAATGCAACAGAACCGTACTGCACCAAGTACACA
AGAGGCTTCACCCGAAGAGGTAGTTGGTAGCGACGACACAGCGCAAGGAA
GCGAGTCGGCGGAGAATTTCGCGCAAGCTTCCCCGGTAACACCGGCACAA
GAGCGTGGTGCGTCGGTAGATGAAGATGAAGTGAAGGGTGAAGCTGAGGT
GGAAGATAGTAGTACACCAAAATTGAAAGAGATGGAAAAGCCCGAGCGGA
TGTACGGCGATCATGATGCACGAGCACGAGTGCTGGACTTTTTCTTCGAG
AAGGTGTTTGCGTTAGCTGGCACCAGAACCGAAGAACTGTTAAGAAGACT
TGACCTTGTTCATCTGAGATCACAGGTGTGGAGGAGCATCAAGTTCGCGC
TGTGGTGCAGGTGGAACCTGGTAATCAACAGGCATGTGGATTTGATCATC
CTGTGCGTGATCTACGGCGTGGCGAAGGTGCAGCACATTCAGCTGCGGTT
CCGCACGATTGTAAGACATTACCACAGCCCTGGACCACACGAACGAAGTA
ACGTTCCGATACAATTCGCCATCGGAATTGGTGACTCGCAACATCAGCCT
GTATGA
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Coding sequence (CDS) from alignment at tig00000868_pilon:7091..8446-

>Ggra1053.t1 ID=Ggra1053.t1|Name=Ggra1053.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00000868_pilon:7091..8446- (Gracilaria gracilis GNS1m male)
ATGCTGACACCTCGTTCGTCGCCAAACTTCTCCAGGTATGCGTTGTCCAC
TCGACCCGATGCCCTGGATGCCCTGGCGACTGTGGCTGCCATCTCGCCAC
GATATGTGACAAGGCCACCCACACCGAATGTAGCTGCGTCGCCAACGACG
GCAGATGATAGCCGAACTATGAGGTGGATTACAACCTTGACCGCGAGTCG
CCCAGAAACGAATAGCGAGTCCTGCCTGACGTGTCCGCTGGAGCAAGTAT
CCACGACGGACGGTCTGAGGAAGGTCACGGGCGGCGGTCGTCCACTACTG
GCTATCATTGATGTTGGTAGGCGCTTTTCCGCGGCATTGTGCACCGTTCT
CCGAGACACGAATTCCGATCGACACGTTCGTGAAGTACTGGCTGTTTATT
TTGCAGCTATGGAAGGAATCCTCGAAAAGGAGAAACGTCGGTTGAGTCAA
CAGCCGGAGAAGTTCTTGTCCAACGTACTTCACAACTACGTATTGCACAA
GAGCTTCCTTACGTTTGCGTGGGAAACCACTGCAGCAGCACATGGACGAA
GAGATCTCCAGGTGTTTGCGGTGGCATACCGAGCGTTCGATGTGTCACCG
TTTGAACTTACCAAAGCGTTGGATACATTCTGCATGCTTGTTCCCCAGAT
GCCAAGGTGTTTGGTACACCATTTAGTGTGTTGCGATGCGCGCATACTTG
AATGGATGGCATGGAGAAGCAAGTCACCGCTTGTGCAAGTACTTCAAGCG
TACAACAGAGACTTGATAATGCAACAGAACCGTACTGCACCAAGTACACA
AGAGGCTTCACCCGAAGAGGTAGTTGGTAGCGACGACACAGCGCAAGGAA
GCGAGTCGGCGGAGAATTTCGCGCAAGCTTCCCCGGTAACACCGGCACAA
GAGCGTGGTGCGTCGGTAGATGAAGATGAAGTGAAGGGTGAAGCTGAGGT
GGAAGATAGTAGTACACCAAAATTGAAAGAGATGGAAAAGCCCGAGCGGA
TGTACGGCGATCATGATGCACGAGCACGAGTGCTGGACTTTTTCTTCGAG
AAGGTGTTTGCGTTAGCTGGCACCAGAACCGAAGAACTGTTAAGAAGACT
TGACCTTGTTCATCTGAGATCACAGGTGTGGAGGAGCATCAAGTTCGCGC
TGTGGTGCAGGTGGAACCTGGTAATCAACAGGCATGTGGATTTGATCATC
CTGTGCGTGATCTACGGCGTGGCGAAGGTGCAGCACATTCAGCTGCGGTT
CCGCACGATTGTAAGACATTACCACAGCCCTGGACCACACGAACGAAGTA
ACGTTCCGATACAATTCGCCATCGGAATTGGTGACTCGCAACATCAGCCT
GTATGA
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