Ggra1058.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1058.t1
Unique NameGgra1058.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:71133..72089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008782633.1
PFAMsHAD_2
Max annot lvl35493|Streptophyta
Evalue1.28e-47
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota,37PQC@33090|Viridiplantae,3GA0S@35493|Streptophyta,3KSAY@4447|Liliopsida
DescriptionHaloacid dehalogenase-like hydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1058Ggra1058Gracilaria gracilis GNS1m malegenetig00000868_pilon 71133..72089 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1058.t1.stop1Ggra1058.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 71133..71135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1058.t1.CDS1Ggra1058.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 71133..72089 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1058.t1.exon1Ggra1058.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 71133..72089 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1058.t1.start1Ggra1058.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 72087..72089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1058.t1Ggra1058.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 71133..72089 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=319bp
MTERGDAPPDSVSAPPARHSSLSNLDRLLENTEPTYTTWQRERAKTSLST
FSYDRPLLGADELNESLRPSHLQRHRHVLAPDEQFAAVFMWDTVVYNARE
LEKRAWTIVAEENTLPPPDLQDIVRAEEMAPEAAVQRAFYWFAEWGDIKR
YVFRKAEIFQTLCASYEFHAREGLSDWLQSLDEYGVKTILCSPHPRQFVL
DVLQRIGLSSFFTSSDIVAAEDECESLEQVFLLAAVKAQRPPSKCVVFTD
RPSGVAAAHDVSAKVVALLGVHAAYEIKSADQTVADYEDLVVYNIRRLFS
QQGAEYLDPLTELEIDRK*
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spliced messenger RNA

>Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000868_pilon:71133..72089- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAGCGGGGAGACGCTCCGCCTGACTCTGTGTCGGCTCCGCCTGC
GCGACATAGCTCTCTGTCCAACTTGGACCGACTGCTGGAGAATACGGAGC
CTACCTATACTACCTGGCAGCGTGAAAGGGCGAAGACCTCTCTGTCCACG
TTCAGTTACGACCGCCCGTTGCTGGGCGCTGACGAACTCAATGAATCTCT
CAGGCCGTCGCATCTGCAGCGTCACCGACATGTGCTGGCGCCGGATGAGC
AGTTTGCGGCCGTTTTCATGTGGGATACCGTCGTGTACAATGCGCGCGAG
CTGGAGAAACGTGCGTGGACCATCGTGGCCGAGGAGAACACTCTGCCGCC
ACCGGATTTGCAAGACATAGTACGCGCGGAGGAAATGGCGCCTGAGGCAG
CTGTGCAACGCGCTTTTTACTGGTTTGCTGAATGGGGCGACATTAAGCGC
TATGTGTTTCGCAAGGCAGAGATATTTCAAACGCTATGCGCTTCCTACGA
GTTTCACGCACGGGAGGGCCTCTCCGACTGGTTGCAAAGCCTCGATGAAT
ACGGCGTGAAGACCATTTTGTGCTCCCCGCACCCAAGACAATTCGTTCTG
GACGTGCTTCAACGTATTGGCCTTTCTTCTTTTTTCACCTCAAGCGACAT
CGTTGCCGCAGAGGATGAGTGCGAATCGCTGGAGCAAGTTTTCTTGCTGG
CGGCGGTCAAGGCACAGCGACCGCCAAGTAAGTGCGTGGTCTTCACGGAT
AGACCATCCGGTGTCGCCGCCGCACACGACGTTAGCGCAAAAGTGGTTGC
GCTGTTGGGTGTTCATGCCGCGTACGAGATTAAGTCTGCTGATCAAACTG
TCGCAGACTACGAAGATCTCGTTGTGTACAACATTCGCCGCCTGTTTTCA
CAACAAGGAGCTGAGTATCTTGACCCGCTTACCGAGCTTGAGATTGACCG
CAAGTGA
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protein sequence of Ggra1058.t1

>Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=319bp
MTERGDAPPDSVSAPPARHSSLSNLDRLLENTEPTYTTWQRERAKTSLST
FSYDRPLLGADELNESLRPSHLQRHRHVLAPDEQFAAVFMWDTVVYNARE
LEKRAWTIVAEENTLPPPDLQDIVRAEEMAPEAAVQRAFYWFAEWGDIKR
YVFRKAEIFQTLCASYEFHAREGLSDWLQSLDEYGVKTILCSPHPRQFVL
DVLQRIGLSSFFTSSDIVAAEDECESLEQVFLLAAVKAQRPPSKCVVFTD
RPSGVAAAHDVSAKVVALLGVHAAYEIKSADQTVADYEDLVVYNIRRLFS
QQGAEYLDPLTELEIDRK*
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mRNA from alignment at tig00000868_pilon:71133..72089-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000868_pilon:71133..72089- (Gracilaria gracilis GNS1m male)
ATGACGGAGCGGGGAGACGCTCCGCCTGACTCTGTGTCGGCTCCGCCTGC
GCGACATAGCTCTCTGTCCAACTTGGACCGACTGCTGGAGAATACGGAGC
CTACCTATACTACCTGGCAGCGTGAAAGGGCGAAGACCTCTCTGTCCACG
TTCAGTTACGACCGCCCGTTGCTGGGCGCTGACGAACTCAATGAATCTCT
CAGGCCGTCGCATCTGCAGCGTCACCGACATGTGCTGGCGCCGGATGAGC
AGTTTGCGGCCGTTTTCATGTGGGATACCGTCGTGTACAATGCGCGCGAG
CTGGAGAAACGTGCGTGGACCATCGTGGCCGAGGAGAACACTCTGCCGCC
ACCGGATTTGCAAGACATAGTACGCGCGGAGGAAATGGCGCCTGAGGCAG
CTGTGCAACGCGCTTTTTACTGGTTTGCTGAATGGGGCGACATTAAGCGC
TATGTGTTTCGCAAGGCAGAGATATTTCAAACGCTATGCGCTTCCTACGA
GTTTCACGCACGGGAGGGCCTCTCCGACTGGTTGCAAAGCCTCGATGAAT
ACGGCGTGAAGACCATTTTGTGCTCCCCGCACCCAAGACAATTCGTTCTG
GACGTGCTTCAACGTATTGGCCTTTCTTCTTTTTTCACCTCAAGCGACAT
CGTTGCCGCAGAGGATGAGTGCGAATCGCTGGAGCAAGTTTTCTTGCTGG
CGGCGGTCAAGGCACAGCGACCGCCAAGTAAGTGCGTGGTCTTCACGGAT
AGACCATCCGGTGTCGCCGCCGCACACGACGTTAGCGCAAAAGTGGTTGC
GCTGTTGGGTGTTCATGCCGCGTACGAGATTAAGTCTGCTGATCAAACTG
TCGCAGACTACGAAGATCTCGTTGTGTACAACATTCGCCGCCTGTTTTCA
CAACAAGGAGCTGAGTATCTTGACCCGCTTACCGAGCTTGAGATTGACCG
CAAGTGA
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Coding sequence (CDS) from alignment at tig00000868_pilon:71133..72089-

>Ggra1058.t1 ID=Ggra1058.t1|Name=Ggra1058.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00000868_pilon:71133..72089- (Gracilaria gracilis GNS1m male)
ATGACGGAGCGGGGAGACGCTCCGCCTGACTCTGTGTCGGCTCCGCCTGC
GCGACATAGCTCTCTGTCCAACTTGGACCGACTGCTGGAGAATACGGAGC
CTACCTATACTACCTGGCAGCGTGAAAGGGCGAAGACCTCTCTGTCCACG
TTCAGTTACGACCGCCCGTTGCTGGGCGCTGACGAACTCAATGAATCTCT
CAGGCCGTCGCATCTGCAGCGTCACCGACATGTGCTGGCGCCGGATGAGC
AGTTTGCGGCCGTTTTCATGTGGGATACCGTCGTGTACAATGCGCGCGAG
CTGGAGAAACGTGCGTGGACCATCGTGGCCGAGGAGAACACTCTGCCGCC
ACCGGATTTGCAAGACATAGTACGCGCGGAGGAAATGGCGCCTGAGGCAG
CTGTGCAACGCGCTTTTTACTGGTTTGCTGAATGGGGCGACATTAAGCGC
TATGTGTTTCGCAAGGCAGAGATATTTCAAACGCTATGCGCTTCCTACGA
GTTTCACGCACGGGAGGGCCTCTCCGACTGGTTGCAAAGCCTCGATGAAT
ACGGCGTGAAGACCATTTTGTGCTCCCCGCACCCAAGACAATTCGTTCTG
GACGTGCTTCAACGTATTGGCCTTTCTTCTTTTTTCACCTCAAGCGACAT
CGTTGCCGCAGAGGATGAGTGCGAATCGCTGGAGCAAGTTTTCTTGCTGG
CGGCGGTCAAGGCACAGCGACCGCCAAGTAAGTGCGTGGTCTTCACGGAT
AGACCATCCGGTGTCGCCGCCGCACACGACGTTAGCGCAAAAGTGGTTGC
GCTGTTGGGTGTTCATGCCGCGTACGAGATTAAGTCTGCTGATCAAACTG
TCGCAGACTACGAAGATCTCGTTGTGTACAACATTCGCCGCCTGTTTTCA
CAACAAGGAGCTGAGTATCTTGACCCGCTTACCGAGCTTGAGATTGACCG
CAAGTGA
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