Ggra7644.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7644.t1
Unique NameGgra7644.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:891401..892349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog983545.Glaag_1483
PFAMsBig_2,UnbV_ASPIC,VCBS
Max annot lvl1236|Gammaproteobacteria
Evalue4.03e-16
EggNOG OGsCOG2931@1|root,COG5492@1|root,COG2931@2|Bacteria,COG5492@2|Bacteria,1R7ZV@1224|Proteobacteria,1RPUG@1236|Gammaproteobacteria,464WY@72275|Alteromonadaceae
DescriptionASPIC and UnbV
COG categoryNQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7644Ggra7644Gracilaria gracilis GNS1m malegenetig00000866_pilon 891219..892349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7644.t1Ggra7644.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 891401..892349 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7644.t1.stop1Ggra7644.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 891401..891403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7644.t1.CDS1Ggra7644.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 891401..891413 -
Ggra7644.t1.CDS2Ggra7644.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000866_pilon 891460..892349 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7644.t1.exon1Ggra7644.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 891401..891413 -
Ggra7644.t1.exon2Ggra7644.t1.exon2Gracilaria gracilis GNS1m maleexontig00000866_pilon 891460..892349 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7644.t1.intron1Ggra7644.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000866_pilon 891414..891459 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7644.t1.start1Ggra7644.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 892347..892349 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7644.t1 ID=Ggra7644.t1|Name=Ggra7644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=301bp
MFEVNPFNRSIVEVTQQAGITERGGRGRTAVYLDLSMGAHPYWPDVIYTN
AWAMEGIHQFAYESVGQQKFALRTLQGGFEWTRNPLAVVTDMENDGVMEV
LSYYFFTVWKLVAPFHMVDVSDRVLPPNMARDGVVSVTEIDFDGDGDFDL
YLARDRIGFWMPDTVYHDILLENRDGRYFDVSEQAGIPRGTKSCGVTTGD
FNNDGLMDLHVSQYMGDDIVLLNNGNGSFRRADGLTSHAKDTRGDMATAV
DYDMDGKVDLIMSEGDHDDVSIGGTYRVFNNVMASAGNYVHVRVGNPLVT
*
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spliced messenger RNA

>Ggra7644.t1 ID=Ggra7644.t1|Name=Ggra7644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000866_pilon:891401..892349- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAGGTCAACCCGTTCAATCGTTCCATCGTTGAGGTCACGCAGCA
AGCCGGTATCACCGAACGCGGAGGTCGCGGCAGGACGGCCGTGTACTTGG
ACCTCTCCATGGGCGCGCACCCGTACTGGCCTGATGTGATCTACACCAAC
GCCTGGGCTATGGAAGGCATCCACCAATTCGCGTACGAAAGCGTTGGCCA
ACAAAAGTTCGCGCTTCGCACGTTGCAAGGCGGATTCGAATGGACTAGAA
ACCCGCTCGCCGTGGTCACCGACATGGAGAACGACGGTGTCATGGAGGTA
TTGAGCTATTACTTCTTCACGGTTTGGAAGCTGGTGGCGCCGTTCCACAT
GGTGGACGTGTCCGACAGAGTGCTGCCGCCCAACATGGCGCGCGATGGTG
TGGTGTCAGTTACCGAGATTGACTTTGACGGCGATGGCGACTTCGACCTG
TACCTCGCCAGGGACCGAATCGGCTTCTGGATGCCCGACACCGTGTACCA
CGACATCCTGCTGGAGAACCGCGACGGTCGCTACTTCGACGTGAGCGAGC
AGGCCGGTATCCCTCGGGGCACCAAGTCGTGCGGAGTGACCACCGGAGAC
TTCAACAACGACGGGCTGATGGATCTGCACGTGTCGCAGTACATGGGCGA
CGACATTGTGCTGCTCAACAACGGGAACGGGTCCTTCCGACGCGCGGACG
GACTCACCTCACACGCCAAAGACACCCGTGGTGACATGGCAACGGCGGTT
GACTACGACATGGACGGCAAGGTGGACCTGATCATGAGCGAGGGTGACCA
CGACGATGTGTCAATTGGAGGTACTTATCGCGTGTTCAACAACGTGATGG
CCAGCGCCGGCAACTACGTGCACGTGCGCGTGGGAAACCCTCTGGTGACC
TGA
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protein sequence of Ggra7644.t1

>Ggra7644.t1 ID=Ggra7644.t1|Name=Ggra7644.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=301bp
MFEVNPFNRSIVEVTQQAGITERGGRGRTAVYLDLSMGAHPYWPDVIYTN
AWAMEGIHQFAYESVGQQKFALRTLQGGFEWTRNPLAVVTDMENDGVMEV
LSYYFFTVWKLVAPFHMVDVSDRVLPPNMARDGVVSVTEIDFDGDGDFDL
YLARDRIGFWMPDTVYHDILLENRDGRYFDVSEQAGIPRGTKSCGVTTGD
FNNDGLMDLHVSQYMGDDIVLLNNGNGSFRRADGLTSHAKDTRGDMATAV
DYDMDGKVDLIMSEGDHDDVSIGGTYRVFNNVMASAGNYVHVRVGNPLVT
*
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mRNA from alignment at tig00000866_pilon:891401..892349-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7644.t1 ID=Ggra7644.t1|Name=Ggra7644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=949bp|location=Sequence derived from alignment at tig00000866_pilon:891401..892349- (Gracilaria gracilis GNS1m male)
ATGTTCGAGGTCAACCCGTTCAATCGTTCCATCGTTGAGGTCACGCAGCA
AGCCGGTATCACCGAACGCGGAGGTCGCGGCAGGACGGCCGTGTACTTGG
ACCTCTCCATGGGCGCGCACCCGTACTGGCCTGATGTGATCTACACCAAC
GCCTGGGCTATGGAAGGCATCCACCAATTCGCGTACGAAAGCGTTGGCCA
ACAAAAGTTCGCGCTTCGCACGTTGCAAGGCGGATTCGAATGGACTAGAA
ACCCGCTCGCCGTGGTCACCGACATGGAGAACGACGGTGTCATGGAGGTA
TTGAGCTATTACTTCTTCACGGTTTGGAAGCTGGTGGCGCCGTTCCACAT
GGTGGACGTGTCCGACAGAGTGCTGCCGCCCAACATGGCGCGCGATGGTG
TGGTGTCAGTTACCGAGATTGACTTTGACGGCGATGGCGACTTCGACCTG
TACCTCGCCAGGGACCGAATCGGCTTCTGGATGCCCGACACCGTGTACCA
CGACATCCTGCTGGAGAACCGCGACGGTCGCTACTTCGACGTGAGCGAGC
AGGCCGGTATCCCTCGGGGCACCAAGTCGTGCGGAGTGACCACCGGAGAC
TTCAACAACGACGGGCTGATGGATCTGCACGTGTCGCAGTACATGGGCGA
CGACATTGTGCTGCTCAACAACGGGAACGGGTCCTTCCGACGCGCGGACG
GACTCACCTCACACGCCAAAGACACCCGTGGTGACATGGCAACGGCGGTT
GACTACGACATGGACGGCAAGGTGGACCTGATCATGAGCGAGGGTGACCA
CGACGATGTGTCAATTGGAGGTACTTATCGCGTGTTCAACAACGTGATGG
CCAGCGCCGGCAACTACGTGCACGTGCGCGTGGGAAACCCGTCTGATCGA
AGCTGCACGCCGCTCAACGCGGTGGTGACGGTCAAGTCTGGTGACCTGA
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Coding sequence (CDS) from alignment at tig00000866_pilon:891401..892349-

>Ggra7644.t1 ID=Ggra7644.t1|Name=Ggra7644.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=903bp|location=Sequence derived from alignment at tig00000866_pilon:891401..892349- (Gracilaria gracilis GNS1m male)
ATGTTCGAGGTCAACCCGTTCAATCGTTCCATCGTTGAGGTCACGCAGCA
AGCCGGTATCACCGAACGCGGAGGTCGCGGCAGGACGGCCGTGTACTTGG
ACCTCTCCATGGGCGCGCACCCGTACTGGCCTGATGTGATCTACACCAAC
GCCTGGGCTATGGAAGGCATCCACCAATTCGCGTACGAAAGCGTTGGCCA
ACAAAAGTTCGCGCTTCGCACGTTGCAAGGCGGATTCGAATGGACTAGAA
ACCCGCTCGCCGTGGTCACCGACATGGAGAACGACGGTGTCATGGAGGTA
TTGAGCTATTACTTCTTCACGGTTTGGAAGCTGGTGGCGCCGTTCCACAT
GGTGGACGTGTCCGACAGAGTGCTGCCGCCCAACATGGCGCGCGATGGTG
TGGTGTCAGTTACCGAGATTGACTTTGACGGCGATGGCGACTTCGACCTG
TACCTCGCCAGGGACCGAATCGGCTTCTGGATGCCCGACACCGTGTACCA
CGACATCCTGCTGGAGAACCGCGACGGTCGCTACTTCGACGTGAGCGAGC
AGGCCGGTATCCCTCGGGGCACCAAGTCGTGCGGAGTGACCACCGGAGAC
TTCAACAACGACGGGCTGATGGATCTGCACGTGTCGCAGTACATGGGCGA
CGACATTGTGCTGCTCAACAACGGGAACGGGTCCTTCCGACGCGCGGACG
GACTCACCTCACACGCCAAAGACACCCGTGGTGACATGGCAACGGCGGTT
GACTACGACATGGACGGCAAGGTGGACCTGATCATGAGCGAGGGTGACCA
CGACGATGTGTCAATTGGAGGTACTTATCGCGTGTTCAACAACGTGATGG
CCAGCGCCGGCAACTACGTGCACGTGCGCGTGGGAAACCCTCTGGTGACC
TGA
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