Ggra7590.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7590.t1
Unique Name	Ggra7590.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	692

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:251651..253726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28377.ENSACAP00000006595
Preferred name	KLHL40
PFAMs	BACK,BTB,Kelch_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10473
GOs	GO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007275,GO:0007517,GO:0007519,GO:0008150,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010604,GO:0010605,GO:0014706,GO:0014902,GO:0014904,GO:0019222,GO:0030016,GO:0030017,GO:0030154,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031331,GO:0031396,GO:0031397,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031461,GO:0031463,GO:0031672,GO:0031674,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032435,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0035914,GO:0036268,GO:0040011,GO:0042176,GO:0042177,GO:0042692,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0045732,GO:0045861,GO:0045862,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048741,GO:0048747,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0055001,GO:0055002,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0061136,GO:0065007,GO:0080090,GO:0098528,GO:0099080,GO:0099081,GO:0099512,GO:1901799,GO:1901800,GO:1902494,GO:1903050,GO:1903051,GO:1903052,GO:1903320,GO:1903321,GO:1903322,GO:1903362,GO:1903363,GO:1903364,GO:1990234,GO:2000058,GO:2000059,GO:2000060
Evalue	2.2e-14
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota,38F06@33154\|Opisthokonta,3BA6K@33208\|Metazoa,3CR56@33213\|Bilateria,483UM@7711\|Chordata,494TK@7742\|Vertebrata
Description	skeletal muscle fiber differentiation
COG category	T
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7590	Ggra7590	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 251651..253726 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7590.t1.start1	Ggra7590.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 251651..251653 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7590.t1.CDS1	Ggra7590.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 251651..253726 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7590.t1.exon1	Ggra7590.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 251651..253726 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7590.t1.stop1	Ggra7590.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 253724..253726 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7590.t1	Ggra7590.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 251651..253726 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:251651..253726+
coding sequence from alignment at tig00000866_pilon:251651..253726+

mRNA sequence

>Ggra7590.t1 ID=Ggra7590.t1|Name=Ggra7590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=692bp
MMNIVLHAHVPIPNPAPSPWKTGPGCSWRLCAHRNRPNVVSLSLNLIRHQ
TDSSGYIVVNVEYPEIASQPVQNLNATRQLPKHPRDLRLHLPRGEPSTVI
QLPLTYAPSGKKEITLKIDILMEEQPMSPTAVRDISFRTPITAALQRPPT
SPSTSHQALSQARPPSSESQIHSPSPRAASISWIDERSYSSSGIRPSKDL
LCFGIDDMPKCAKGQTFNTRKIGTKEVQIQPKYELKSLLCGSGLQATANH
GQEMNNFSDVTLIVEREGGDDAEFYLHRSVLAMASPVFRAMFSCGMREDK
TGRVVLSYFDVATVGLAVRHMYGENVADSVEQNAFGAYRFGHQFDVSSLF
EVTQRVILSKMCTSTCIDVLNLSVFFDDTKLEKHASTFILEHFSELASMK
ETRQQLCSLPPACFLPILESDMLVATELEIFLVSMEWLSIHEGSVPVKDI
LRRIRWSSMTQHMFRMAMKSPLITRFPVLRNFLKSSRTTISQHLNGSKPR
RRHIFDQPMVAVPVPAIRQPPAAVLYVPEVRSSDKPWSGSEFKRRNTQQL
IFSSRNEKVFEYQDLAWVFRAKLSKCKALGCSHQRLSASLWLEQNDEGLV
SATSRQDSVGSHSFPMKVQARCMVWNNMGGQFHHRVIDFTFQSPGWAGGW
CVEDLLGDHNQTKVFLDRLSSLQEAGPVIEVALEILKCEKG*

spliced messenger RNA

>Ggra7590.t1 ID=Ggra7590.t1|Name=Ggra7590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00000866_pilon:251651..253726+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAATATCGTGCTGCATGCTCACGTTCCAATACCAAATCCAGCTCC
TTCGCCCTGGAAAACTGGACCAGGTTGCTCTTGGCGGTTGTGCGCGCACC
GAAATCGCCCAAATGTTGTTTCACTTTCTCTTAACCTTATTCGACATCAA
ACGGATTCATCAGGATACATTGTCGTGAATGTTGAATACCCTGAAATTGC
TTCGCAGCCGGTGCAGAACTTAAATGCTACAAGACAGTTGCCGAAGCATC
CTCGGGATCTTCGGCTTCATCTACCAAGGGGAGAACCATCAACGGTAATA
CAACTGCCATTGACTTATGCGCCTTCCGGGAAGAAGGAGATTACATTGAA
GATAGACATTTTGATGGAGGAACAGCCCATGTCCCCAACTGCAGTTCGAG
ACATTTCCTTTCGAACTCCAATAACTGCCGCCCTTCAACGCCCACCCACG
TCTCCGTCTACATCTCATCAAGCGCTTTCACAAGCACGTCCCCCGTCGAG
CGAAAGTCAAATTCATTCTCCATCACCAAGAGCTGCATCTATATCATGGA
TTGATGAAAGAAGCTACTCTTCTTCGGGCATAAGGCCATCGAAAGATCTG
CTCTGCTTTGGGATTGATGATATGCCCAAATGCGCCAAAGGGCAAACATT
CAATACCCGGAAGATTGGCACGAAGGAAGTACAAATACAGCCGAAGTACG
AACTGAAATCTCTTCTTTGCGGAAGCGGGTTGCAGGCCACGGCAAACCAT
GGCCAAGAAATGAACAATTTCTCGGATGTCACTCTGATCGTCGAAAGAGA
GGGAGGAGATGATGCAGAATTCTACTTGCATCGTAGTGTGCTTGCTATGG
CATCTCCTGTGTTTCGGGCAATGTTCTCATGTGGTATGCGTGAAGACAAA
ACTGGGCGAGTTGTACTATCATACTTCGATGTTGCCACGGTTGGTCTCGC
AGTTCGTCACATGTACGGGGAGAATGTGGCGGATTCTGTCGAACAGAACG
CGTTTGGTGCGTATAGATTTGGCCATCAGTTTGACGTGTCGAGCCTTTTT
GAAGTTACACAGAGAGTGATACTGAGCAAGATGTGTACCTCAACTTGTAT
CGACGTCCTAAATCTCAGTGTTTTCTTCGACGATACTAAGCTTGAGAAAC
ATGCTTCAACCTTTATCTTGGAACACTTTTCAGAACTTGCATCAATGAAG
GAAACTCGCCAACAGCTCTGTTCGCTTCCACCGGCATGTTTCCTTCCTAT
TCTGGAATCCGACATGTTGGTCGCGACTGAGCTAGAAATTTTCCTGGTCA
GTATGGAGTGGCTTTCTATTCATGAGGGAAGTGTCCCAGTGAAGGATATT
CTCCGGAGAATACGATGGTCGTCGATGACTCAGCACATGTTCCGGATGGC
AATGAAATCCCCATTGATCACCCGCTTTCCAGTGCTACGAAATTTCCTTA
AATCGTCCAGGACAACGATATCTCAGCATTTGAATGGGTCTAAACCAAGA
AGAAGACACATATTTGATCAACCGATGGTCGCAGTCCCAGTACCCGCTAT
TCGTCAACCACCAGCTGCGGTTCTTTACGTTCCTGAAGTACGTTCTTCGG
ATAAGCCGTGGTCAGGGTCGGAGTTTAAACGACGCAACACTCAACAGTTG
ATATTTTCCTCCAGAAATGAGAAGGTTTTTGAATACCAAGATTTGGCTTG
GGTGTTTCGAGCAAAACTCAGCAAATGCAAAGCCCTTGGCTGCTCTCACC
AAAGATTGTCTGCCAGCCTCTGGCTTGAACAAAACGACGAGGGGTTAGTC
TCCGCAACTTCGCGACAAGACTCGGTTGGGTCACACTCTTTCCCAATGAA
GGTTCAAGCGAGATGTATGGTGTGGAACAACATGGGAGGGCAATTCCATC
ATAGAGTCATAGATTTCACTTTTCAATCGCCGGGGTGGGCCGGTGGGTGG
TGCGTAGAAGATTTGCTTGGGGATCATAACCAGACGAAGGTTTTTCTCGA
TAGGCTTTCATCGCTTCAAGAGGCAGGGCCTGTGATAGAGGTAGCTCTCG
AGATCTTGAAATGTGAAAAGGGATGA

protein sequence of Ggra7590.t1

>Ggra7590.t1 ID=Ggra7590.t1|Name=Ggra7590.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=692bp
MMNIVLHAHVPIPNPAPSPWKTGPGCSWRLCAHRNRPNVVSLSLNLIRHQ
TDSSGYIVVNVEYPEIASQPVQNLNATRQLPKHPRDLRLHLPRGEPSTVI
QLPLTYAPSGKKEITLKIDILMEEQPMSPTAVRDISFRTPITAALQRPPT
SPSTSHQALSQARPPSSESQIHSPSPRAASISWIDERSYSSSGIRPSKDL
LCFGIDDMPKCAKGQTFNTRKIGTKEVQIQPKYELKSLLCGSGLQATANH
GQEMNNFSDVTLIVEREGGDDAEFYLHRSVLAMASPVFRAMFSCGMREDK
TGRVVLSYFDVATVGLAVRHMYGENVADSVEQNAFGAYRFGHQFDVSSLF
EVTQRVILSKMCTSTCIDVLNLSVFFDDTKLEKHASTFILEHFSELASMK
ETRQQLCSLPPACFLPILESDMLVATELEIFLVSMEWLSIHEGSVPVKDI
LRRIRWSSMTQHMFRMAMKSPLITRFPVLRNFLKSSRTTISQHLNGSKPR
RRHIFDQPMVAVPVPAIRQPPAAVLYVPEVRSSDKPWSGSEFKRRNTQQL
IFSSRNEKVFEYQDLAWVFRAKLSKCKALGCSHQRLSASLWLEQNDEGLV
SATSRQDSVGSHSFPMKVQARCMVWNNMGGQFHHRVIDFTFQSPGWAGGW
CVEDLLGDHNQTKVFLDRLSSLQEAGPVIEVALEILKCEKG*

mRNA from alignment at tig00000866_pilon:251651..253726+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7590.t1 ID=Ggra7590.t1|Name=Ggra7590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2076bp|location=Sequence derived from alignment at tig00000866_pilon:251651..253726+ (Gracilaria gracilis GNS1m male)
ATGATGAATATCGTGCTGCATGCTCACGTTCCAATACCAAATCCAGCTCC
TTCGCCCTGGAAAACTGGACCAGGTTGCTCTTGGCGGTTGTGCGCGCACC
GAAATCGCCCAAATGTTGTTTCACTTTCTCTTAACCTTATTCGACATCAA
ACGGATTCATCAGGATACATTGTCGTGAATGTTGAATACCCTGAAATTGC
TTCGCAGCCGGTGCAGAACTTAAATGCTACAAGACAGTTGCCGAAGCATC
CTCGGGATCTTCGGCTTCATCTACCAAGGGGAGAACCATCAACGGTAATA
CAACTGCCATTGACTTATGCGCCTTCCGGGAAGAAGGAGATTACATTGAA
GATAGACATTTTGATGGAGGAACAGCCCATGTCCCCAACTGCAGTTCGAG
ACATTTCCTTTCGAACTCCAATAACTGCCGCCCTTCAACGCCCACCCACG
TCTCCGTCTACATCTCATCAAGCGCTTTCACAAGCACGTCCCCCGTCGAG
CGAAAGTCAAATTCATTCTCCATCACCAAGAGCTGCATCTATATCATGGA
TTGATGAAAGAAGCTACTCTTCTTCGGGCATAAGGCCATCGAAAGATCTG
CTCTGCTTTGGGATTGATGATATGCCCAAATGCGCCAAAGGGCAAACATT
CAATACCCGGAAGATTGGCACGAAGGAAGTACAAATACAGCCGAAGTACG
AACTGAAATCTCTTCTTTGCGGAAGCGGGTTGCAGGCCACGGCAAACCAT
GGCCAAGAAATGAACAATTTCTCGGATGTCACTCTGATCGTCGAAAGAGA
GGGAGGAGATGATGCAGAATTCTACTTGCATCGTAGTGTGCTTGCTATGG
CATCTCCTGTGTTTCGGGCAATGTTCTCATGTGGTATGCGTGAAGACAAA
ACTGGGCGAGTTGTACTATCATACTTCGATGTTGCCACGGTTGGTCTCGC
AGTTCGTCACATGTACGGGGAGAATGTGGCGGATTCTGTCGAACAGAACG
CGTTTGGTGCGTATAGATTTGGCCATCAGTTTGACGTGTCGAGCCTTTTT
GAAGTTACACAGAGAGTGATACTGAGCAAGATGTGTACCTCAACTTGTAT
CGACGTCCTAAATCTCAGTGTTTTCTTCGACGATACTAAGCTTGAGAAAC
ATGCTTCAACCTTTATCTTGGAACACTTTTCAGAACTTGCATCAATGAAG
GAAACTCGCCAACAGCTCTGTTCGCTTCCACCGGCATGTTTCCTTCCTAT
TCTGGAATCCGACATGTTGGTCGCGACTGAGCTAGAAATTTTCCTGGTCA
GTATGGAGTGGCTTTCTATTCATGAGGGAAGTGTCCCAGTGAAGGATATT
CTCCGGAGAATACGATGGTCGTCGATGACTCAGCACATGTTCCGGATGGC
AATGAAATCCCCATTGATCACCCGCTTTCCAGTGCTACGAAATTTCCTTA
AATCGTCCAGGACAACGATATCTCAGCATTTGAATGGGTCTAAACCAAGA
AGAAGACACATATTTGATCAACCGATGGTCGCAGTCCCAGTACCCGCTAT
TCGTCAACCACCAGCTGCGGTTCTTTACGTTCCTGAAGTACGTTCTTCGG
ATAAGCCGTGGTCAGGGTCGGAGTTTAAACGACGCAACACTCAACAGTTG
ATATTTTCCTCCAGAAATGAGAAGGTTTTTGAATACCAAGATTTGGCTTG
GGTGTTTCGAGCAAAACTCAGCAAATGCAAAGCCCTTGGCTGCTCTCACC
AAAGATTGTCTGCCAGCCTCTGGCTTGAACAAAACGACGAGGGGTTAGTC
TCCGCAACTTCGCGACAAGACTCGGTTGGGTCACACTCTTTCCCAATGAA
GGTTCAAGCGAGATGTATGGTGTGGAACAACATGGGAGGGCAATTCCATC
ATAGAGTCATAGATTTCACTTTTCAATCGCCGGGGTGGGCCGGTGGGTGG
TGCGTAGAAGATTTGCTTGGGGATCATAACCAGACGAAGGTTTTTCTCGA
TAGGCTTTCATCGCTTCAAGAGGCAGGGCCTGTGATAGAGGTAGCTCTCG
AGATCTTGAAATGTGAAAAGGGATGA

Coding sequence (CDS) from alignment at tig00000866_pilon:251651..253726+

>Ggra7590.t1 ID=Ggra7590.t1|Name=Ggra7590.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2076bp|location=Sequence derived from alignment at tig00000866_pilon:251651..253726+ (Gracilaria gracilis GNS1m male)
ATGATGAATATCGTGCTGCATGCTCACGTTCCAATACCAAATCCAGCTCC
TTCGCCCTGGAAAACTGGACCAGGTTGCTCTTGGCGGTTGTGCGCGCACC
GAAATCGCCCAAATGTTGTTTCACTTTCTCTTAACCTTATTCGACATCAA
ACGGATTCATCAGGATACATTGTCGTGAATGTTGAATACCCTGAAATTGC
TTCGCAGCCGGTGCAGAACTTAAATGCTACAAGACAGTTGCCGAAGCATC
CTCGGGATCTTCGGCTTCATCTACCAAGGGGAGAACCATCAACGGTAATA
CAACTGCCATTGACTTATGCGCCTTCCGGGAAGAAGGAGATTACATTGAA
GATAGACATTTTGATGGAGGAACAGCCCATGTCCCCAACTGCAGTTCGAG
ACATTTCCTTTCGAACTCCAATAACTGCCGCCCTTCAACGCCCACCCACG
TCTCCGTCTACATCTCATCAAGCGCTTTCACAAGCACGTCCCCCGTCGAG
CGAAAGTCAAATTCATTCTCCATCACCAAGAGCTGCATCTATATCATGGA
TTGATGAAAGAAGCTACTCTTCTTCGGGCATAAGGCCATCGAAAGATCTG
CTCTGCTTTGGGATTGATGATATGCCCAAATGCGCCAAAGGGCAAACATT
CAATACCCGGAAGATTGGCACGAAGGAAGTACAAATACAGCCGAAGTACG
AACTGAAATCTCTTCTTTGCGGAAGCGGGTTGCAGGCCACGGCAAACCAT
GGCCAAGAAATGAACAATTTCTCGGATGTCACTCTGATCGTCGAAAGAGA
GGGAGGAGATGATGCAGAATTCTACTTGCATCGTAGTGTGCTTGCTATGG
CATCTCCTGTGTTTCGGGCAATGTTCTCATGTGGTATGCGTGAAGACAAA
ACTGGGCGAGTTGTACTATCATACTTCGATGTTGCCACGGTTGGTCTCGC
AGTTCGTCACATGTACGGGGAGAATGTGGCGGATTCTGTCGAACAGAACG
CGTTTGGTGCGTATAGATTTGGCCATCAGTTTGACGTGTCGAGCCTTTTT
GAAGTTACACAGAGAGTGATACTGAGCAAGATGTGTACCTCAACTTGTAT
CGACGTCCTAAATCTCAGTGTTTTCTTCGACGATACTAAGCTTGAGAAAC
ATGCTTCAACCTTTATCTTGGAACACTTTTCAGAACTTGCATCAATGAAG
GAAACTCGCCAACAGCTCTGTTCGCTTCCACCGGCATGTTTCCTTCCTAT
TCTGGAATCCGACATGTTGGTCGCGACTGAGCTAGAAATTTTCCTGGTCA
GTATGGAGTGGCTTTCTATTCATGAGGGAAGTGTCCCAGTGAAGGATATT
CTCCGGAGAATACGATGGTCGTCGATGACTCAGCACATGTTCCGGATGGC
AATGAAATCCCCATTGATCACCCGCTTTCCAGTGCTACGAAATTTCCTTA
AATCGTCCAGGACAACGATATCTCAGCATTTGAATGGGTCTAAACCAAGA
AGAAGACACATATTTGATCAACCGATGGTCGCAGTCCCAGTACCCGCTAT
TCGTCAACCACCAGCTGCGGTTCTTTACGTTCCTGAAGTACGTTCTTCGG
ATAAGCCGTGGTCAGGGTCGGAGTTTAAACGACGCAACACTCAACAGTTG
ATATTTTCCTCCAGAAATGAGAAGGTTTTTGAATACCAAGATTTGGCTTG
GGTGTTTCGAGCAAAACTCAGCAAATGCAAAGCCCTTGGCTGCTCTCACC
AAAGATTGTCTGCCAGCCTCTGGCTTGAACAAAACGACGAGGGGTTAGTC
TCCGCAACTTCGCGACAAGACTCGGTTGGGTCACACTCTTTCCCAATGAA
GGTTCAAGCGAGATGTATGGTGTGGAACAACATGGGAGGGCAATTCCATC
ATAGAGTCATAGATTTCACTTTTCAATCGCCGGGGTGGGCCGGTGGGTGG
TGCGTAGAAGATTTGCTTGGGGATCATAACCAGACGAAGGTTTTTCTCGA
TAGGCTTTCATCGCTTCAAGAGGCAGGGCCTGTGATAGAGGTAGCTCTCG
AGATCTTGAAATGTGAAAAGGGATGA