Ggra7571.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7571.t1
Unique NameGgra7571.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:95414..96049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0T1C8
PFAMsCpn10
Max annot lvl2836|Bacillariophyta
KEGG koko:K04078
Evalue3.35e-53
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota,2XGQX@2836|Bacillariophyta
DescriptionBelongs to the GroES chaperonin family
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7571Ggra7571Gracilaria gracilis GNS1m malegenetig00000866_pilon 95414..96049 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7571.t1.stop1Ggra7571.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 95414..95416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7571.t1.CDS1Ggra7571.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 95414..96049 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7571.t1.exon1Ggra7571.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 95414..96049 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7571.t1.start1Ggra7571.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 96047..96049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7571.t1Ggra7571.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 95414..96049 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7571.t1 ID=Ggra7571.t1|Name=Ggra7571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MTAAAASHTLDGRTISGPLQPVGQNILVKIAESPDTTTGGLFLAATAKEK
PTYGEAIEVGPGKYFPNGIHVPMNVKKGDYVLYGKYGGTDLDYDGDKHTI
VTQDDILCKLQDGEYSASAVQPIQDRMLVKVDEAAEETSSGILLSKTAKT
KSTSGKVVAMGPGRYMENGEMEPLAFQVGDTVYYGKYSGSEVEFGGDQYM
VIRMADVYAKL*
back to top

spliced messenger RNA

>Ggra7571.t1 ID=Ggra7571.t1|Name=Ggra7571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000866_pilon:95414..96049- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCGCCGCCGCTTCGCATACATTGGACGGAAGGACAATTTCAGG
CCCGTTGCAGCCCGTTGGACAGAATATTCTCGTCAAGATCGCCGAGTCAC
CTGACACTACTACTGGTGGACTATTTCTTGCCGCCACTGCGAAGGAAAAG
CCGACGTACGGCGAGGCGATTGAAGTGGGTCCGGGTAAGTATTTCCCCAA
CGGAATTCACGTACCGATGAATGTGAAGAAGGGAGATTATGTCTTGTATG
GAAAGTATGGTGGTACCGACCTTGATTATGATGGAGATAAGCATACCATT
GTCACTCAGGATGATATTTTGTGCAAGCTGCAGGATGGCGAGTACTCTGC
GTCTGCGGTACAACCCATCCAGGACAGGATGTTAGTCAAGGTTGATGAAG
CTGCAGAAGAGACATCTTCTGGGATTCTTTTGTCCAAGACGGCCAAGACA
AAATCCACTTCTGGCAAGGTTGTTGCGATGGGCCCGGGACGCTACATGGA
AAACGGTGAGATGGAACCTTTAGCCTTCCAAGTCGGCGATACTGTCTACT
ATGGAAAGTACAGTGGTTCGGAGGTAGAGTTTGGTGGCGACCAGTATATG
GTGATTCGTATGGCAGATGTGTACGCTAAACTATAG
back to top

protein sequence of Ggra7571.t1

>Ggra7571.t1 ID=Ggra7571.t1|Name=Ggra7571.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MTAAAASHTLDGRTISGPLQPVGQNILVKIAESPDTTTGGLFLAATAKEK
PTYGEAIEVGPGKYFPNGIHVPMNVKKGDYVLYGKYGGTDLDYDGDKHTI
VTQDDILCKLQDGEYSASAVQPIQDRMLVKVDEAAEETSSGILLSKTAKT
KSTSGKVVAMGPGRYMENGEMEPLAFQVGDTVYYGKYSGSEVEFGGDQYM
VIRMADVYAKL*
back to top

mRNA from alignment at tig00000866_pilon:95414..96049-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7571.t1 ID=Ggra7571.t1|Name=Ggra7571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000866_pilon:95414..96049- (Gracilaria gracilis GNS1m male)
ATGACTGCCGCCGCCGCTTCGCATACATTGGACGGAAGGACAATTTCAGG
CCCGTTGCAGCCCGTTGGACAGAATATTCTCGTCAAGATCGCCGAGTCAC
CTGACACTACTACTGGTGGACTATTTCTTGCCGCCACTGCGAAGGAAAAG
CCGACGTACGGCGAGGCGATTGAAGTGGGTCCGGGTAAGTATTTCCCCAA
CGGAATTCACGTACCGATGAATGTGAAGAAGGGAGATTATGTCTTGTATG
GAAAGTATGGTGGTACCGACCTTGATTATGATGGAGATAAGCATACCATT
GTCACTCAGGATGATATTTTGTGCAAGCTGCAGGATGGCGAGTACTCTGC
GTCTGCGGTACAACCCATCCAGGACAGGATGTTAGTCAAGGTTGATGAAG
CTGCAGAAGAGACATCTTCTGGGATTCTTTTGTCCAAGACGGCCAAGACA
AAATCCACTTCTGGCAAGGTTGTTGCGATGGGCCCGGGACGCTACATGGA
AAACGGTGAGATGGAACCTTTAGCCTTCCAAGTCGGCGATACTGTCTACT
ATGGAAAGTACAGTGGTTCGGAGGTAGAGTTTGGTGGCGACCAGTATATG
GTGATTCGTATGGCAGATGTGTACGCTAAACTATAG
back to top

Coding sequence (CDS) from alignment at tig00000866_pilon:95414..96049-

>Ggra7571.t1 ID=Ggra7571.t1|Name=Ggra7571.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000866_pilon:95414..96049- (Gracilaria gracilis GNS1m male)
ATGACTGCCGCCGCCGCTTCGCATACATTGGACGGAAGGACAATTTCAGG
CCCGTTGCAGCCCGTTGGACAGAATATTCTCGTCAAGATCGCCGAGTCAC
CTGACACTACTACTGGTGGACTATTTCTTGCCGCCACTGCGAAGGAAAAG
CCGACGTACGGCGAGGCGATTGAAGTGGGTCCGGGTAAGTATTTCCCCAA
CGGAATTCACGTACCGATGAATGTGAAGAAGGGAGATTATGTCTTGTATG
GAAAGTATGGTGGTACCGACCTTGATTATGATGGAGATAAGCATACCATT
GTCACTCAGGATGATATTTTGTGCAAGCTGCAGGATGGCGAGTACTCTGC
GTCTGCGGTACAACCCATCCAGGACAGGATGTTAGTCAAGGTTGATGAAG
CTGCAGAAGAGACATCTTCTGGGATTCTTTTGTCCAAGACGGCCAAGACA
AAATCCACTTCTGGCAAGGTTGTTGCGATGGGCCCGGGACGCTACATGGA
AAACGGTGAGATGGAACCTTTAGCCTTCCAAGTCGGCGATACTGTCTACT
ATGGAAAGTACAGTGGTTCGGAGGTAGAGTTTGGTGGCGACCAGTATATG
GTGATTCGTATGGCAGATGTGTACGCTAAACTATAG
back to top