Ggra3568.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3568.t1
Unique NameGgra3568.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000864_piloncontigtig00000864_pilon:2635..5467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog179408.Osc7112_1725
PFAMsNAD_binding_10
Max annot lvl1117|Cyanobacteria
Evalue5.48e-30
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,1G22R@1117|Cyanobacteria,1H8U1@1150|Oscillatoriales
DescriptionNmrA-like family
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3568Ggra3568Gracilaria gracilis GNS1m malegenetig00000864_pilon 2635..5467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3568.t1Ggra3568.t1Gracilaria gracilis GNS1m malepolypeptidetig00000864_pilon 2635..5467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3568.t1.CDS1Ggra3568.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000864_pilon 2635..3168 +
Ggra3568.t1.CDS2Ggra3568.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000864_pilon 4382..4461 +
Ggra3568.t1.CDS3Ggra3568.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000864_pilon 4547..4590 +
Ggra3568.t1.CDS4Ggra3568.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000864_pilon 4655..5467 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3568.t1.exon1Ggra3568.t1.exon1Gracilaria gracilis GNS1m maleexontig00000864_pilon 2635..3168 +
Ggra3568.t1.exon2Ggra3568.t1.exon2Gracilaria gracilis GNS1m maleexontig00000864_pilon 4382..4461 +
Ggra3568.t1.exon3Ggra3568.t1.exon3Gracilaria gracilis GNS1m maleexontig00000864_pilon 4547..4590 +
Ggra3568.t1.exon4Ggra3568.t1.exon4Gracilaria gracilis GNS1m maleexontig00000864_pilon 4655..5467 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3568.t1.intron1Ggra3568.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000864_pilon 3169..4381 +
Ggra3568.t1.intron2Ggra3568.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000864_pilon 4462..4546 +
Ggra3568.t1.intron3Ggra3568.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000864_pilon 4591..4654 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3568.t1.stop1Ggra3568.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000864_pilon 5465..5467 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3568.t1 ID=Ggra3568.t1|Name=Ggra3568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=491bp
XAASSEQEQASTTHPLDALDGSAAEALFNSLKPRTVVSCIGGKAGAPELP
DFTGNKNLIDAARRANVRRFVLISALGAGNSEGSVPFQVMDTLRPILLEK
SRAEAYLKQVEDMDWTIIRPAPIVEGKSGNPVATEDVSCYGTITRPDLAS
VVKKILVSEKAKNKTLHVVDRAGLLIVSPAAAVTDNLTGSKIYIVGCVHG
SNVSADDVRQVLDRTDPDAVVLELCEPRLKALRKTISRKDEGSQYSANIK
ARTKKSFSQLSKTFGGRGPALVALILEKVYEFQTLVGIDPGIEFVEPIVR
FPPNRIICGDVLARDTVKALFKVFAAPFRSLNDCFASIVDIVNRLIFPPK
GGVRILSVFLRSPARLFELLRLLLPASMVAILVGLAGNAGAVAFDMTPIG
ASVSHPMFASSLSSLSSLVDTALVAYINISLLRFLKVLIADRDKVLSQNV
LNTLSNFREGQGAPVTVCVVVGLLHVNGMLRILQEQVKSS*
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spliced messenger RNA

>Ggra3568.t1 ID=Ggra3568.t1|Name=Ggra3568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1471bp|location=Sequence derived from alignment at tig00000864_pilon:2635..5467+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGCTTCTTCGGAACAAGAACAAGCGTCAACAACGCATCCACTTGACG
CCTTGGATGGTTCCGCAGCAGAAGCTTTGTTTAACAGTTTGAAACCTCGT
ACAGTAGTGTCTTGTATAGGTGGAAAGGCTGGAGCACCAGAATTGCCCGA
CTTCACCGGAAACAAAAATCTTATTGACGCAGCAAGACGAGCAAATGTCC
GACGCTTCGTGCTCATCTCCGCACTGGGTGCTGGAAACAGCGAAGGCAGC
GTACCATTCCAAGTGATGGACACTCTGCGCCCGATACTCCTCGAGAAGAG
CCGCGCAGAAGCATACCTAAAGCAAGTTGAAGATATGGATTGGACCATCA
TCAGGCCAGCACCGATTGTGGAAGGCAAAAGCGGAAACCCTGTTGCCACT
GAGGATGTCAGTTGTTATGGAACGATCACGAGGCCCGACTTGGCAAGTGT
GGTGAAGAAGATTCTCGTCAGTGAGAAGGCGAAGAATAAGACGTTGCACG
TGGTGGATAGGGCTGGCTTGCTTATCGTGTCACCCGCTGCGGCGGTTACC
GACAATTTAACTGGCTCGAAGATATACATTGTTGGTTGTGTCCATGGATC
TAATGTCAGTGCAGACGATGTACGTCAAGTTTTGGACAGAACCGATCCGG
ACGCTGTTGTTTTGGAGCTGTGTGAACCGCGATTGAAAGCACTTCGCAAG
ACAATCTCTCGAAAAGATGAAGGATCACAATACTCAGCGAACATAAAAGC
CAGAACGAAAAAATCCTTCTCCCAGTTATCGAAAACATTCGGAGGTCGTG
GACCAGCATTGGTTGCTCTAATTCTTGAGAAGGTGTATGAATTCCAAACC
TTGGTCGGTATTGATCCAGGAATAGAATTCGTTGAACCCATAGTAAGGTT
TCCTCCTAACCGTATTATATGCGGTGACGTCCTGGCAAGAGACACAGTTA
AGGCGTTGTTCAAAGTATTTGCAGCGCCATTTCGATCGCTTAATGATTGT
TTTGCATCCATTGTTGACATTGTGAACAGGTTGATATTTCCACCCAAGGG
TGGTGTGCGAATACTTTCCGTCTTCCTGAGAAGTCCGGCACGACTTTTCG
AACTTTTGAGATTGTTACTCCCAGCTTCCATGGTTGCCATTTTGGTCGGT
TTGGCTGGCAATGCTGGTGCTGTTGCCTTCGATATGACTCCTATTGGTGC
GTCTGTTTCACACCCGATGTTTGCATCTTCTCTGTCATCTCTGTCTTCAC
TTGTGGATACGGCCCTAGTTGCGTACATTAATATATCGTTGCTTCGCTTC
CTCAAGGTTTTGATTGCCGATCGGGATAAGGTTCTTTCCCAGAACGTGCT
GAACACGCTGTCGAACTTTCGAGAAGGTCAGGGAGCTCCTGTGACGGTTT
GCGTTGTTGTCGGTCTTCTACATGTGAACGGCATGTTGAGAATTTTACAA
GAGCAAGTTAAGAGTTCATAG
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protein sequence of Ggra3568.t1

>Ggra3568.t1 ID=Ggra3568.t1|Name=Ggra3568.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
XAASSEQEQASTTHPLDALDGSAAEALFNSLKPRTVVSCIGGKAGAPELP
DFTGNKNLIDAARRANVRRFVLISALGAGNSEGSVPFQVMDTLRPILLEK
SRAEAYLKQVEDMDWTIIRPAPIVEGKSGNPVATEDVSCYGTITRPDLAS
VVKKILVSEKAKNKTLHVVDRAGLLIVSPAAAVTDNLTGSKIYIVGCVHG
SNVSADDVRQVLDRTDPDAVVLELCEPRLKALRKTISRKDEGSQYSANIK
ARTKKSFSQLSKTFGGRGPALVALILEKVYEFQTLVGIDPGIEFVEPIVR
FPPNRIICGDVLARDTVKALFKVFAAPFRSLNDCFASIVDIVNRLIFPPK
GGVRILSVFLRSPARLFELLRLLLPASMVAILVGLAGNAGAVAFDMTPIG
ASVSHPMFASSLSSLSSLVDTALVAYINISLLRFLKVLIADRDKVLSQNV
LNTLSNFREGQGAPVTVCVVVGLLHVNGMLRILQEQVKSS*
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mRNA from alignment at tig00000864_pilon:2635..5467+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3568.t1 ID=Ggra3568.t1|Name=Ggra3568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2833bp|location=Sequence derived from alignment at tig00000864_pilon:2635..5467+ (Gracilaria gracilis GNS1m male)
TGCTGCTTCTTCGGAACAAGAACAAGCGTCAACAACGCATCCACTTGACG
CCTTGGATGGTTCCGCAGCAGAAGCTTTGTTTAACAGTTTGAAACCTCGT
ACAGTAGTGTCTTGTATAGGTGGAAAGGCTGGAGCACCAGAATTGCCCGA
CTTCACCGGAAACAAAAATCTTATTGACGCAGCAAGACGAGCAAATGTCC
GACGCTTCGTGCTCATCTCCGCACTGGGTGCTGGAAACAGCGAAGGCAGC
GTACCATTCCAAGTGATGGACACTCTGCGCCCGATACTCCTCGAGAAGAG
CCGCGCAGAAGCATACCTAAAGCAAGTTGAAGATATGGATTGGACCATCA
TCAGGCCAGCACCGATTGTGGAAGGCAAAAGCGGAAACCCTGTTGCCACT
GAGGATGTCAGTTGTTATGGAACGATCACGAGGCCCGACTTGGCAAGTGT
GGTGAAGAAGATTCTCGTCAGTGAGAAGGCGAAGAATAAGACGTTGCACG
TGGTGGATAGGGCTGGCTTGCTTATCGTGTCACCGTATGTACGTCCTCTA
GAATTCTGGGAACCTCTGCCATTTAGCGAATTCGAGTTGTGAGACAGCGA
CAGCGAAGGTGGGTTTTCGACGGAAGCCTTGCAAGTGATGGGGTATAGGC
GACTCGGAGAAAGCTGCTCTCCGCTTGTTTGTTCAATTGCTGTTTAACGC
TGCATCAACGATCAAGAAATGTGTTGATGCGTGTAGAGAACGAAGCGCAT
CTCTCGCGGATGGTGATATGGGGAAGAAGGCAAGGCGCATCATCATGGGA
GGGATTTTAAATGGTAACGATTGTAATAAACTACACGGTACTTTCTGGTG
AGCATAAAATATCTTTCAATAGCGGGATTTGGTTCCCTACCATCAAGATG
GAGAGAATCTGGGCATGACTGGTAGCATTGTGTTTCTTGCTCTGAATATC
GTGTTATTCTTGTACTTGTCCAATCTAAAAAGATTTGCAGTGAATCTTCA
CAGAATAGTTTTGAAAGCCTTTGGTTGAAAGATAAATTCGTGCAGGCTGA
CGAAAGTCTGCAAGATAATCGAGAATGATATTTCTGAGGAAGAATAAGAT
TGAACCTTCTCGAAAACCTCACAGGGAAGATATGTACATGGCAACGCTGT
CGTTGGCTAGAGGAAGGCTAGCCCTCTTTTACACTAACAGCTAACTTTTA
ACCCTTGGTCAAGGAATTCATCTACGAAGGTATGGTAGCATGTTTCGCCC
CCTCTTGGGCACACGTGTCAAGACTGAGGTGCTCATATCAGACAGACAGA
TATGTGAAGGAGTGGTGGAGATTGGTAGATAGAGCTCCCAACCGTCTTCA
TCAGTCCTTTACGCGGTGCTCACCAGTATTGACCGACTCGGCAGACCGAA
TCACCGTGCGTCTCACAGCTTCATAGACCATTCTCTCAGTTTATTTTGTG
CAGATGATAGCAATATTTGTAACAATCAACTGATACTACCATCTCCGCAA
GAGAAAGCAACTGTGTTGAACCTATCAGATTTTGCGCTCTTGCAATGTCG
GAAGCATTTGTGTCTTATTTCCCACAATCTCTTCATCAGCGCAGTTCAGG
CGTATGGGGAGATTCTGCGGAAAGGTACAGGCGGAGTTGTTCTTTTAGTC
CGTCTCGTCTTTCAAAGAAATCCATTGAGACATCATATACGCATCATCGA
ACAGATCTGTCTCCAGTATGTTCACGAGAATCATGGCTTCCGCTAAGCGC
TGCGGCGGTTACCGACAATTTAACTGGCTCGAAGATATACATTGTTGGTT
GTGTCCATGGATCTAATGTCAGTGCAGGTTCGTATAGAAACATCCTCTCG
AAATGCCCAAATGTCCAAGCTCATCAACTACGTTTTACTAACCATTTTGA
CCACCACTGCAGACGATGTACGTCAAGTTTTGGACAGAACCGATCCGGAC
GCTGTTGTAAGTTGGATCTCTTTTCCTTTATGCATCTCTACAGTTATAGA
ATTCTGACAAACCATTTTAGGTTTTGGAGCTGTGTGAACCGCGATTGAAA
GCACTTCGCAAGACAATCTCTCGAAAAGATGAAGGATCACAATACTCAGC
GAACATAAAAGCCAGAACGAAAAAATCCTTCTCCCAGTTATCGAAAACAT
TCGGAGGTCGTGGACCAGCATTGGTTGCTCTAATTCTTGAGAAGGTGTAT
GAATTCCAAACCTTGGTCGGTATTGATCCAGGAATAGAATTCGTTGAACC
CATAGTAAGGTTTCCTCCTAACCGTATTATATGCGGTGACGTCCTGGCAA
GAGACACAGTTAAGGCGTTGTTCAAAGTATTTGCAGCGCCATTTCGATCG
CTTAATGATTGTTTTGCATCCATTGTTGACATTGTGAACAGGTTGATATT
TCCACCCAAGGGTGGTGTGCGAATACTTTCCGTCTTCCTGAGAAGTCCGG
CACGACTTTTCGAACTTTTGAGATTGTTACTCCCAGCTTCCATGGTTGCC
ATTTTGGTCGGTTTGGCTGGCAATGCTGGTGCTGTTGCCTTCGATATGAC
TCCTATTGGTGCGTCTGTTTCACACCCGATGTTTGCATCTTCTCTGTCAT
CTCTGTCTTCACTTGTGGATACGGCCCTAGTTGCGTACATTAATATATCG
TTGCTTCGCTTCCTCAAGGTTTTGATTGCCGATCGGGATAAGGTTCTTTC
CCAGAACGTGCTGAACACGCTGTCGAACTTTCGAGAAGGTCAGGGAGCTC
CTGTGACGGTTTGCGTTGTTGTCGGTCTTCTACATGTGAACGGCATGTTG
AGAATTTTACAAGAGCAAGTTAAGAGTTCATAG
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Coding sequence (CDS) from alignment at tig00000864_pilon:2635..5467+

>Ggra3568.t1 ID=Ggra3568.t1|Name=Ggra3568.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1471bp|location=Sequence derived from alignment at tig00000864_pilon:2635..5467+ (Gracilaria gracilis GNS1m male)
TGCTGCTTCTTCGGAACAAGAACAAGCGTCAACAACGCATCCACTTGACG
CCTTGGATGGTTCCGCAGCAGAAGCTTTGTTTAACAGTTTGAAACCTCGT
ACAGTAGTGTCTTGTATAGGTGGAAAGGCTGGAGCACCAGAATTGCCCGA
CTTCACCGGAAACAAAAATCTTATTGACGCAGCAAGACGAGCAAATGTCC
GACGCTTCGTGCTCATCTCCGCACTGGGTGCTGGAAACAGCGAAGGCAGC
GTACCATTCCAAGTGATGGACACTCTGCGCCCGATACTCCTCGAGAAGAG
CCGCGCAGAAGCATACCTAAAGCAAGTTGAAGATATGGATTGGACCATCA
TCAGGCCAGCACCGATTGTGGAAGGCAAAAGCGGAAACCCTGTTGCCACT
GAGGATGTCAGTTGTTATGGAACGATCACGAGGCCCGACTTGGCAAGTGT
GGTGAAGAAGATTCTCGTCAGTGAGAAGGCGAAGAATAAGACGTTGCACG
TGGTGGATAGGGCTGGCTTGCTTATCGTGTCACCCGCTGCGGCGGTTACC
GACAATTTAACTGGCTCGAAGATATACATTGTTGGTTGTGTCCATGGATC
TAATGTCAGTGCAGACGATGTACGTCAAGTTTTGGACAGAACCGATCCGG
ACGCTGTTGTTTTGGAGCTGTGTGAACCGCGATTGAAAGCACTTCGCAAG
ACAATCTCTCGAAAAGATGAAGGATCACAATACTCAGCGAACATAAAAGC
CAGAACGAAAAAATCCTTCTCCCAGTTATCGAAAACATTCGGAGGTCGTG
GACCAGCATTGGTTGCTCTAATTCTTGAGAAGGTGTATGAATTCCAAACC
TTGGTCGGTATTGATCCAGGAATAGAATTCGTTGAACCCATAGTAAGGTT
TCCTCCTAACCGTATTATATGCGGTGACGTCCTGGCAAGAGACACAGTTA
AGGCGTTGTTCAAAGTATTTGCAGCGCCATTTCGATCGCTTAATGATTGT
TTTGCATCCATTGTTGACATTGTGAACAGGTTGATATTTCCACCCAAGGG
TGGTGTGCGAATACTTTCCGTCTTCCTGAGAAGTCCGGCACGACTTTTCG
AACTTTTGAGATTGTTACTCCCAGCTTCCATGGTTGCCATTTTGGTCGGT
TTGGCTGGCAATGCTGGTGCTGTTGCCTTCGATATGACTCCTATTGGTGC
GTCTGTTTCACACCCGATGTTTGCATCTTCTCTGTCATCTCTGTCTTCAC
TTGTGGATACGGCCCTAGTTGCGTACATTAATATATCGTTGCTTCGCTTC
CTCAAGGTTTTGATTGCCGATCGGGATAAGGTTCTTTCCCAGAACGTGCT
GAACACGCTGTCGAACTTTCGAGAAGGTCAGGGAGCTCCTGTGACGGTTT
GCGTTGTTGTCGGTCTTCTACATGTGAACGGCATGTTGAGAATTTTACAA
GAGCAAGTTAAGAGTTCATAG
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