Ggra9307.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9307.t1
Unique NameGgra9307.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length681
Homology
BLAST of Ggra9307.t1 vs. uniprot
Match: A0A2V3IHD2 (Protein transport protein SEC16A-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHD2_9FLOR)

HSP 1 Score: 613 bits (1580), Expect = 3.710e-192
Identity = 397/826 (48.06%), Postives = 484/826 (58.60%), Query Frame = 0
Query:    1 MIDRKLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRITSPAGLTEWRKNVGMLLTSGASITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHACYLLSGRLDSLDRNQICLLGANSKTTPGRPGSFGSPAAILQSIVFEATINARNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESGNSVAAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTSVFARRSKDQTGKQSSQELGSQNTMAGSQPFVPTPPVGPGHIHAP-SDHVHANHPPHLSLDSQRAGIFNPAQISQLPNQANEAFDQSAKKEKSGNEKWNYLVQKTVGLIAPADYDLSPPPPARAPPAVFCGQGHPSPFGLDGGAGTRAPGQGLTPSHMRSASVGALPSEYFSS--------------------------------------------------------------------SQFAR-----------------------------------------------------------------------EDPDXXXXXXXXXXXXXNMFSSDGSNVQTSASYDLLPNPSNNDHNTTALLRSQSAQDARDMNSFNMS-NSHDQIATPFNPLSSYPGSLDNSVGGDDGSATSVASAAGAPVPYSAVPSFTASSTG----NSNKYRAGGGRRSNRRAYVDTFNKGRPPAPMSTIPTPARPAVPAFGGVSLASGGGYKIFTPTPVPSSSTGNSDVGHGANSSASVVKTSDPMPASGSDISSSQNAPMTNSSHSDALPPKPPSYTSS-LGSGRQPRMMA 680
            M+D KLY S+LCD+AK  L EGSALQTLC SL+END+EITRRITSPAGL EWRKNVG+LLTSGAS+T    +  RF+ LI+QVGDALL Q+ D+VG+H CYLLSGRL  LD   ICLLGAN  T PGRP S GSP +ILQS+V+EA +NAR+G   PH+LPFRLLLA EIASVG P++ALAHC+SISK+VR IFES NS  A  FT+PFLS LESF+ +LR +LG++E+    T+L+AL +SL+SVF+R SK++    S+    SQ+ +  +  F  T  +     +   S  +  NHPPHLS+DSQ    +N  Q +   NQ +    Q+ K EKSG EKW+  V KTVGLIAPADYDLSPPPP+R PP++     HP+P GLDGG+G     QGL P+HMRS+SVGA+PS +F+S                                                                    SQ +                                                                        E+P  XXXXXXXXXXXX MF  +G+ VQ S SYD LP+   + HN   LLRSQSAQDA   N FN     H Q      P  S PGSLDNS GGDDGSA SVASAA APVPYSA  S   SS+G    +SNKYR  G  R  RRAYVDTFNK +P      +PTPARPAVPA+GG++ A+GGGY IFTPTP+PS+STG+S++  GA+S+ SVV+TSD +  S SD SSS N   +N         KPP++ S    +GRQPRMMA
Sbjct: 2123 MVDTKLYTSILCDYAKNILQEGSALQTLCFSLAENDAEITRRITSPAGLDEWRKNVGILLTSGASVTTSKARETRFLHLIEQVGDALLTQHADMVGAHVCYLLSGRLGRLDPKGICLLGANPSTPPGRPRSLGSPGSILQSVVYEAAMNARSGAAFPHLLPFRLLLAQEIASVGHPDIALAHCDSISKQVRVIFESRNSAIAAQFTAPFLSSLESFDQRLRAHLGLREEVGNLTKLTALGKSLSSVFSRASKERHSIPSTSADRSQDHLPSTASFATTTAMPYEERNTGVSVSMPFNHPPHLSVDSQWGAGYNSLQPAGFINQNSNTNTQATKIEKSGKEKWDQFVSKTVGLIAPADYDLSPPPPSRVPPSMAQ---HPAPIGLDGGSGLMTNMQGLAPNHMRSSSVGAIPSAFFNSTPALTVPKNGGMPHSGSQESGSEKSVPLAVVGKSGHAVLNGVPLQKATREENNDAIVHRRSASDMTLQSQTSEKKPPLHPKKPARASNVTDTSATTDKPTQKKGWRERLKEKLTATFGGPPRAHMGEENKFVFDKKRGRWVIEGEEPTEXXXXXXXXXXXXXMFGGEGNRVQASLSYDPLPSTEQSAHNVPTLLRSQSAQDALGSNGFNYPYTEHTQAPASLKPPFSGPGSLDNSFGGDDGSAASVASAASAPVPYSAGSSSKISSSGTNNHDSNKYRRVG--RPGRRAYVDTFNKSKPSMSTPALPTPARPAVPAYGGITAATGGGYNIFTPTPIPSTSTGDSNMAQGASSTTSVVETSDQLTTSLSDTSSSHNGLASNQPTGHVQSLKPPAHPSGRFSTGRQPRMMA 2943          
BLAST of Ggra9307.t1 vs. uniprot
Match: R7QQG8 (Sec16_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQG8_CHOCR)

HSP 1 Score: 300 bits (769), Expect = 4.860e-84
Identity = 192/451 (42.57%), Postives = 270/451 (59.87%), Query Frame = 0
Query:    3 DRKLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRITSPAGLTEWRKNVGMLLTSGAS-ITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHACYLLSGRLDSLDRNQICLLGANSKTTPGRPGSFGSPAAILQSIVFEATINARNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESG-NSVAAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTS-VFARRSKDQTGKQSSQELGSQNTMAGSQPFVPTPPVGPGHIH-------------APSDH--------VHANHPPHLSLD-----SQRAGIFNPAQISQLPNQANEAFDQSAK---KEKSGNEKWNYLVQKTVGLIAPADYDLSPPPPARAP-PAVFCGQGHPSPFGLDGGAGTRAPGQGLTPSHMRSASVGALPSEYFSSSQFA 420
            D+ LY S++ DFAK +L++GSALQTL  S++END+EI ++ TS AGL EWRK V MLLT+  S +  D ++ +RF+ LIDQVG+AL++Q  D+VG H CYLLSGR+  LD +   LLGA+SK   G P S GS AAILQS+V+EA + A++GK+ PH+LPFRL+LA EIA+VGR ++AL+HC S++  VR +F+SG N VA++  T PFL+ LES + +LR +LG+    E+  +L+A+ +SL++ VF R S       S   + S +  + + P    PP    H +             AP  H          ++HPP+         S    I    Q+  L    +  +D S     +E+SG+++WN  V KT+G++APA  DLSPPP    P P+   G     P GL    G+RAPG  L  SHMRS S+G +P+     SQ A
Sbjct: 1677 DQTLYKSLITDFAKKSLNDGSALQTLFFSMAENDAEILQKATSTAGLREWRKTVTMLLTNYRSAMEADPQRGERFLRLIDQVGEALISQLGDIVGGHVCYLLSGRISILDSSSTVLLGADSKRPVGCPRSLGSAAAILQSLVYEAIVCAQSGKSFPHLLPFRLVLAEEIAAVGRSDIALSHCESVAAGVRTMFDSGRNDVASEFLTLPFLAGLESLDQRLRAHLGLSHGTERVGKLTAMGRSLSAAVFNRTSATPKPTPSRTPVESASGGSTNNPSPDVPPHQFSHANMYSSRAPPTYSNQAPFAHDVNGSAMIATSHHPPYGGKGVSQGPSPEQQIPGNLQVPALSVPHSSGYDSSRSGPGQEESGSKRWNEFVSKTIGVLAPAHGDLSPPPRTGQPIPSELHGV---PPMGLGLDTGSRAPGHELDASHMRSQSMGNVPAAMPQMSQAA 2124          
BLAST of Ggra9307.t1 vs. uniprot
Match: I1H207 (Protein transport protein sec16 n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1H207_BRADI)

HSP 1 Score: 62.4 bits (150), Expect = 2.950e-6
Identity = 91/399 (22.81%), Postives = 169/399 (42.36%), Query Frame = 0
Query:    5 KLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRIT------------------SPAG-LTEWRKNVGMLLTSGASITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHACYLLSG-RLDSLDRN-QICLLGANSKTTPGRPGSFGSPAAILQSIVFE-ATINARNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESGNSVAAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTSVFARRSKDQTGKQSSQELGSQNTMAGSQPFV-PTPPVGPGH------IHAP--SDHVHANH---PPHLSLDSQ------------RAGIFNPA----QISQLPNQANEAFDQSAKKEKSGNEKWNYLVQKTVGLIA 353
            K Y   +   A  +   GS L+TLCL ++   +++                       +P G L +W++N+ ++  +         ++K    +I  +GD L  +  +V  +H+CYL++   +D+     ++CLLGA+    P    +F SP AI ++ ++E A +   +        P++L+ A  +A VG+   +L +C +  K ++A   SG +   + +   F     S E ++R +    ++G   T L+  +  +  +F         K  S+ +G+Q T     P   P PP+  G         AP  ++ V+ N    P   S   Q            R G  N +      ++ P Q   + D       SGN ++ +L+QKT+GL++
Sbjct:  910 KFYADTVKKMAYSHFMSGSPLRTLCLLIAGQPADVFHAENPIDANYGTLHRPQEAAEGTPKGMLDDWQQNLAIITAN---------RTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAELNIDAYSETARMCLLGADHLRCPR---TFTSPEAIQRTELYEYAKVLGNSQYILLPFQPYKLVYAYMLAEVGKISDSLRYCQASLKVLKA---SGRAPELEAWKQLF----SSLEERIRTH----QQGGYGTNLAPAK-LVGKLFT-----SLDKSLSRMMGTQPTSL--PPLAQPMPPLAQGSSTERDLYSAPPATNFVNNNQSATPMSFSASEQSMSDMTGNSGPDRKGTHNRSVSEPDFNRAPQQGTRS-DNPQSTSGSGNSRFGWLLQKTMGLVS 1276          
The following BLAST results are available for this feature:
BLAST of Ggra9307.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IHD23.710e-19248.06Protein transport protein SEC16A-like n=1 Tax=Grac... [more]
R7QQG84.860e-8442.57Sec16_C domain-containing protein n=1 Tax=Chondrus... [more]
I1H2072.950e-622.81Protein transport protein sec16 n=2 Tax=Brachypodi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024298Ancestral coatomer element 1, Sec16/Sec31PFAMPF12931Sec16_Ccoord: 3..203
e-value: 8.6E-13
score: 48.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 440..515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 606..674
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 606..680
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 360..515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..324
IPR024880COPII coat assembly protein, Sec16PANTHERPTHR13402RGPR-RELATEDcoord: 3..675

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:482245..484711 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9307.t1Ggra9307.t1Gracilaria gracilis GNS1m malemRNAtig00000863_pilon 482245..484711 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9307.t1 ID=Ggra9307.t1|Name=Ggra9307.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=681bp
MIDRKLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRITSPAGLT
EWRKNVGMLLTSGASITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHAC
YLLSGRLDSLDRNQICLLGANSKTTPGRPGSFGSPAAILQSIVFEATINA
RNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESGNSV
AAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTSVFARR
SKDQTGKQSSQELGSQNTMAGSQPFVPTPPVGPGHIHAPSDHVHANHPPH
LSLDSQRAGIFNPAQISQLPNQANEAFDQSAKKEKSGNEKWNYLVQKTVG
LIAPADYDLSPPPPARAPPAVFCGQGHPSPFGLDGGAGTRAPGQGLTPSH
MRSASVGALPSEYFSSSQFAREDPDEEEDVPPPPPDDDNMFSSDGSNVQT
SASYDLLPNPSNNDHNTTALLRSQSAQDARDMNSFNMSNSHDQIATPFNP
LSSYPGSLDNSVGGDDGSATSVASAAGAPVPYSAVPSFTASSTGNSNKYR
AGGGRRSNRRAYVDTFNKGRPPAPMSTIPTPARPAVPAFGGVSLASGGGY
KIFTPTPVPSSSTGNSDVGHGANSSASVVKTSDPMPASGSDISSSQNAPM
TNSSHSDALPPKPPSYTSSLGSGRQPRMMA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024298ACE1_Sec16_Sec31
IPR024880Sec16