Ggra9335.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9335.t1
Unique Name	Ggra9335.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	617

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000863_pilon	contig	tig00000863_pilon:960352..962202 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9335	Ggra9335	Gracilaria gracilis GNS1m male	gene	tig00000863_pilon 960352..962202 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9335.t1.stop1	Ggra9335.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000863_pilon 960352..960354 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9335.t1.CDS1	Ggra9335.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000863_pilon 960352..962202 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9335.t1.exon1	Ggra9335.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000863_pilon 960352..962202 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9335.t1.start1	Ggra9335.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000863_pilon 962200..962202 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9335.t1	Ggra9335.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000863_pilon 960352..962202 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000863_pilon:960352..962202-
coding sequence from alignment at tig00000863_pilon:960352..962202-

mRNA sequence

>Ggra9335.t1 ID=Ggra9335.t1|Name=Ggra9335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=617bp
MMLRPLPERCQAFLSVCQDQSFMSFLKGSEKRHRLGQFPSMKEQMNLYVG
RRGLDISDTVHWRYNIENCKQIFDIDLFPLVRDGFTDIFIAGHREHNLNI
AEQTLQGTRSFTPTFDYLAREKIIPIAVSYKHGTDEQLSLQRLYSGICAL
DYFLEPGTRYLLWIDLVPTTGIWKRKQRLDASWLKRGLLPYQLFVVLCLD
NSNSGRPRDDYVNSFWLNIEGVLATLGSGMVMVGPDLKRNAVASWLFEHR
TSDIPIEYAQIEALDGKMQVAFRPGNTMDCDAALKFLLQNAVKGAYDNTT
ARYNEDKDDLIRMANCMFHCRSRKDFGKLAYNLDYSDYEQLFQTLSSHTD
PERVWLPMLRSGRTFYTPIPGEHTMYPTYISSTLDPETSTDTFQWLPKNC
RYFRSPADPPGMYDIWIHFQSHAKVVAVIAMAVISPPPSDPERTREEGTI
HVKILKAKEIASNHAGTTTYGVERVIDLWDCRIPVLLRDMLRVLHGQALS
FRGMRRFLKHSGVECPELTSFFVSEKFESVLNDTPEAVLQGIQEDAEDSS
DMAIVASDYDEEDDKAERNNGLLKMTMSSDTFDIWMKYYYRMWTIGDAGP
YSDDDKEMQSSRNTAV*

spliced messenger RNA

>Ggra9335.t1 ID=Ggra9335.t1|Name=Ggra9335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1851bp|location=Sequence derived from alignment at tig00000863_pilon:960352..962202- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTACGACCGCTACCCGAACGATGTCAAGCATTTCTGAGCGTCTG
CCAGGACCAAAGCTTTATGAGCTTTCTCAAAGGCAGCGAAAAGCGACACA
GACTCGGACAGTTTCCGTCCATGAAAGAGCAGATGAATCTGTACGTTGGT
CGCCGCGGTCTGGACATTTCGGACACCGTACACTGGCGCTACAACATTGA
GAACTGTAAGCAAATTTTCGATATCGACCTCTTTCCGCTGGTCAGGGACG
GTTTCACGGACATATTTATCGCCGGACACCGCGAGCACAACCTCAACATC
GCCGAGCAGACGCTTCAGGGAACTCGTAGCTTCACTCCTACCTTTGATTA
CCTGGCGCGGGAGAAAATTATACCTATTGCCGTCTCTTACAAGCACGGAA
CTGATGAGCAGCTGAGCTTGCAAAGATTATACAGCGGTATCTGTGCCTTA
GATTATTTCCTAGAACCGGGCACCAGGTATTTGCTGTGGATAGACCTTGT
CCCGACCACCGGTATATGGAAGCGTAAGCAACGCCTGGACGCCTCTTGGT
TGAAACGGGGTTTGCTTCCTTACCAGCTGTTCGTCGTACTATGTTTGGAT
AATTCTAATTCGGGCCGCCCTCGAGACGATTACGTCAACAGCTTTTGGCT
CAATATCGAGGGTGTGCTCGCAACGCTTGGATCTGGTATGGTCATGGTCG
GCCCCGATCTTAAGAGAAACGCAGTCGCCTCGTGGCTATTTGAACACCGC
ACATCCGATATTCCCATCGAGTACGCACAGATTGAAGCACTTGACGGCAA
GATGCAAGTGGCCTTTCGCCCGGGTAACACCATGGATTGTGACGCGGCGC
TCAAATTCTTGCTGCAGAACGCTGTCAAGGGAGCTTACGATAACACCACC
GCCAGGTACAATGAGGACAAGGATGACTTGATCCGCATGGCTAATTGCAT
GTTTCATTGTCGATCCCGTAAGGACTTTGGAAAACTCGCCTATAACCTCG
ACTACTCAGATTATGAACAGCTCTTTCAAACACTCTCATCTCATACAGAT
CCGGAGCGTGTTTGGCTCCCGATGTTGAGATCGGGGCGCACGTTTTACAC
TCCAATTCCTGGGGAGCATACTATGTACCCAACTTACATCTCATCAACTC
TCGACCCAGAAACAAGTACTGACACTTTTCAGTGGCTACCAAAGAATTGC
CGTTACTTTCGCTCTCCTGCTGATCCACCCGGAATGTACGACATTTGGAT
TCATTTTCAGAGCCACGCAAAGGTCGTAGCTGTCATAGCCATGGCTGTAA
TTTCCCCCCCACCTTCGGACCCAGAGCGAACAAGGGAGGAGGGAACAATT
CATGTGAAAATATTGAAAGCAAAAGAAATAGCTTCGAATCATGCCGGTAC
GACAACATATGGTGTGGAGAGAGTGATTGATCTTTGGGACTGCCGAATAC
CAGTGCTGCTTAGAGATATGTTAAGGGTGTTGCATGGACAGGCTCTTAGC
TTCAGAGGAATGAGGCGATTTTTGAAGCACAGCGGAGTAGAGTGCCCTGA
GCTCACCAGTTTCTTTGTTTCAGAGAAGTTTGAGTCCGTACTGAATGATA
CCCCGGAAGCAGTTCTGCAAGGTATACAAGAAGATGCGGAAGACTCATCT
GACATGGCTATAGTCGCTTCGGATTACGATGAAGAGGATGATAAAGCTGA
GCGTAACAATGGACTTTTGAAAATGACAATGTCGTCTGACACCTTTGACA
TATGGATGAAGTACTACTATAGGATGTGGACGATCGGGGACGCTGGCCCA
TATTCAGATGATGACAAAGAGATGCAGTCTTCGCGAAACACAGCAGTGTA
A

protein sequence of Ggra9335.t1

>Ggra9335.t1 ID=Ggra9335.t1|Name=Ggra9335.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=617bp
MMLRPLPERCQAFLSVCQDQSFMSFLKGSEKRHRLGQFPSMKEQMNLYVG
RRGLDISDTVHWRYNIENCKQIFDIDLFPLVRDGFTDIFIAGHREHNLNI
AEQTLQGTRSFTPTFDYLAREKIIPIAVSYKHGTDEQLSLQRLYSGICAL
DYFLEPGTRYLLWIDLVPTTGIWKRKQRLDASWLKRGLLPYQLFVVLCLD
NSNSGRPRDDYVNSFWLNIEGVLATLGSGMVMVGPDLKRNAVASWLFEHR
TSDIPIEYAQIEALDGKMQVAFRPGNTMDCDAALKFLLQNAVKGAYDNTT
ARYNEDKDDLIRMANCMFHCRSRKDFGKLAYNLDYSDYEQLFQTLSSHTD
PERVWLPMLRSGRTFYTPIPGEHTMYPTYISSTLDPETSTDTFQWLPKNC
RYFRSPADPPGMYDIWIHFQSHAKVVAVIAMAVISPPPSDPERTREEGTI
HVKILKAKEIASNHAGTTTYGVERVIDLWDCRIPVLLRDMLRVLHGQALS
FRGMRRFLKHSGVECPELTSFFVSEKFESVLNDTPEAVLQGIQEDAEDSS
DMAIVASDYDEEDDKAERNNGLLKMTMSSDTFDIWMKYYYRMWTIGDAGP
YSDDDKEMQSSRNTAV*

mRNA from alignment at tig00000863_pilon:960352..962202-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9335.t1 ID=Ggra9335.t1|Name=Ggra9335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1851bp|location=Sequence derived from alignment at tig00000863_pilon:960352..962202- (Gracilaria gracilis GNS1m male)
ATGATGCTACGACCGCTACCCGAACGATGTCAAGCATTTCTGAGCGTCTG
CCAGGACCAAAGCTTTATGAGCTTTCTCAAAGGCAGCGAAAAGCGACACA
GACTCGGACAGTTTCCGTCCATGAAAGAGCAGATGAATCTGTACGTTGGT
CGCCGCGGTCTGGACATTTCGGACACCGTACACTGGCGCTACAACATTGA
GAACTGTAAGCAAATTTTCGATATCGACCTCTTTCCGCTGGTCAGGGACG
GTTTCACGGACATATTTATCGCCGGACACCGCGAGCACAACCTCAACATC
GCCGAGCAGACGCTTCAGGGAACTCGTAGCTTCACTCCTACCTTTGATTA
CCTGGCGCGGGAGAAAATTATACCTATTGCCGTCTCTTACAAGCACGGAA
CTGATGAGCAGCTGAGCTTGCAAAGATTATACAGCGGTATCTGTGCCTTA
GATTATTTCCTAGAACCGGGCACCAGGTATTTGCTGTGGATAGACCTTGT
CCCGACCACCGGTATATGGAAGCGTAAGCAACGCCTGGACGCCTCTTGGT
TGAAACGGGGTTTGCTTCCTTACCAGCTGTTCGTCGTACTATGTTTGGAT
AATTCTAATTCGGGCCGCCCTCGAGACGATTACGTCAACAGCTTTTGGCT
CAATATCGAGGGTGTGCTCGCAACGCTTGGATCTGGTATGGTCATGGTCG
GCCCCGATCTTAAGAGAAACGCAGTCGCCTCGTGGCTATTTGAACACCGC
ACATCCGATATTCCCATCGAGTACGCACAGATTGAAGCACTTGACGGCAA
GATGCAAGTGGCCTTTCGCCCGGGTAACACCATGGATTGTGACGCGGCGC
TCAAATTCTTGCTGCAGAACGCTGTCAAGGGAGCTTACGATAACACCACC
GCCAGGTACAATGAGGACAAGGATGACTTGATCCGCATGGCTAATTGCAT
GTTTCATTGTCGATCCCGTAAGGACTTTGGAAAACTCGCCTATAACCTCG
ACTACTCAGATTATGAACAGCTCTTTCAAACACTCTCATCTCATACAGAT
CCGGAGCGTGTTTGGCTCCCGATGTTGAGATCGGGGCGCACGTTTTACAC
TCCAATTCCTGGGGAGCATACTATGTACCCAACTTACATCTCATCAACTC
TCGACCCAGAAACAAGTACTGACACTTTTCAGTGGCTACCAAAGAATTGC
CGTTACTTTCGCTCTCCTGCTGATCCACCCGGAATGTACGACATTTGGAT
TCATTTTCAGAGCCACGCAAAGGTCGTAGCTGTCATAGCCATGGCTGTAA
TTTCCCCCCCACCTTCGGACCCAGAGCGAACAAGGGAGGAGGGAACAATT
CATGTGAAAATATTGAAAGCAAAAGAAATAGCTTCGAATCATGCCGGTAC
GACAACATATGGTGTGGAGAGAGTGATTGATCTTTGGGACTGCCGAATAC
CAGTGCTGCTTAGAGATATGTTAAGGGTGTTGCATGGACAGGCTCTTAGC
TTCAGAGGAATGAGGCGATTTTTGAAGCACAGCGGAGTAGAGTGCCCTGA
GCTCACCAGTTTCTTTGTTTCAGAGAAGTTTGAGTCCGTACTGAATGATA
CCCCGGAAGCAGTTCTGCAAGGTATACAAGAAGATGCGGAAGACTCATCT
GACATGGCTATAGTCGCTTCGGATTACGATGAAGAGGATGATAAAGCTGA
GCGTAACAATGGACTTTTGAAAATGACAATGTCGTCTGACACCTTTGACA
TATGGATGAAGTACTACTATAGGATGTGGACGATCGGGGACGCTGGCCCA
TATTCAGATGATGACAAAGAGATGCAGTCTTCGCGAAACACAGCAGTGTA
A

Coding sequence (CDS) from alignment at tig00000863_pilon:960352..962202-

>Ggra9335.t1 ID=Ggra9335.t1|Name=Ggra9335.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1851bp|location=Sequence derived from alignment at tig00000863_pilon:960352..962202- (Gracilaria gracilis GNS1m male)
ATGATGCTACGACCGCTACCCGAACGATGTCAAGCATTTCTGAGCGTCTG
CCAGGACCAAAGCTTTATGAGCTTTCTCAAAGGCAGCGAAAAGCGACACA
GACTCGGACAGTTTCCGTCCATGAAAGAGCAGATGAATCTGTACGTTGGT
CGCCGCGGTCTGGACATTTCGGACACCGTACACTGGCGCTACAACATTGA
GAACTGTAAGCAAATTTTCGATATCGACCTCTTTCCGCTGGTCAGGGACG
GTTTCACGGACATATTTATCGCCGGACACCGCGAGCACAACCTCAACATC
GCCGAGCAGACGCTTCAGGGAACTCGTAGCTTCACTCCTACCTTTGATTA
CCTGGCGCGGGAGAAAATTATACCTATTGCCGTCTCTTACAAGCACGGAA
CTGATGAGCAGCTGAGCTTGCAAAGATTATACAGCGGTATCTGTGCCTTA
GATTATTTCCTAGAACCGGGCACCAGGTATTTGCTGTGGATAGACCTTGT
CCCGACCACCGGTATATGGAAGCGTAAGCAACGCCTGGACGCCTCTTGGT
TGAAACGGGGTTTGCTTCCTTACCAGCTGTTCGTCGTACTATGTTTGGAT
AATTCTAATTCGGGCCGCCCTCGAGACGATTACGTCAACAGCTTTTGGCT
CAATATCGAGGGTGTGCTCGCAACGCTTGGATCTGGTATGGTCATGGTCG
GCCCCGATCTTAAGAGAAACGCAGTCGCCTCGTGGCTATTTGAACACCGC
ACATCCGATATTCCCATCGAGTACGCACAGATTGAAGCACTTGACGGCAA
GATGCAAGTGGCCTTTCGCCCGGGTAACACCATGGATTGTGACGCGGCGC
TCAAATTCTTGCTGCAGAACGCTGTCAAGGGAGCTTACGATAACACCACC
GCCAGGTACAATGAGGACAAGGATGACTTGATCCGCATGGCTAATTGCAT
GTTTCATTGTCGATCCCGTAAGGACTTTGGAAAACTCGCCTATAACCTCG
ACTACTCAGATTATGAACAGCTCTTTCAAACACTCTCATCTCATACAGAT
CCGGAGCGTGTTTGGCTCCCGATGTTGAGATCGGGGCGCACGTTTTACAC
TCCAATTCCTGGGGAGCATACTATGTACCCAACTTACATCTCATCAACTC
TCGACCCAGAAACAAGTACTGACACTTTTCAGTGGCTACCAAAGAATTGC
CGTTACTTTCGCTCTCCTGCTGATCCACCCGGAATGTACGACATTTGGAT
TCATTTTCAGAGCCACGCAAAGGTCGTAGCTGTCATAGCCATGGCTGTAA
TTTCCCCCCCACCTTCGGACCCAGAGCGAACAAGGGAGGAGGGAACAATT
CATGTGAAAATATTGAAAGCAAAAGAAATAGCTTCGAATCATGCCGGTAC
GACAACATATGGTGTGGAGAGAGTGATTGATCTTTGGGACTGCCGAATAC
CAGTGCTGCTTAGAGATATGTTAAGGGTGTTGCATGGACAGGCTCTTAGC
TTCAGAGGAATGAGGCGATTTTTGAAGCACAGCGGAGTAGAGTGCCCTGA
GCTCACCAGTTTCTTTGTTTCAGAGAAGTTTGAGTCCGTACTGAATGATA
CCCCGGAAGCAGTTCTGCAAGGTATACAAGAAGATGCGGAAGACTCATCT
GACATGGCTATAGTCGCTTCGGATTACGATGAAGAGGATGATAAAGCTGA
GCGTAACAATGGACTTTTGAAAATGACAATGTCGTCTGACACCTTTGACA
TATGGATGAAGTACTACTATAGGATGTGGACGATCGGGGACGCTGGCCCA
TATTCAGATGATGACAAAGAGATGCAGTCTTCGCGAAACACAGCAGTGTA
A