Ggra10063.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10063.t1
Unique NameGgra10063.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:105280..106167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10063Ggra10063Gracilaria gracilis GNS1m malegenetig00000862_pilon 105280..106167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10063.t1Ggra10063.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 105280..106167 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10063.t1.start1Ggra10063.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 105280..105282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10063.t1.CDS1Ggra10063.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 105280..105817 +
Ggra10063.t1.CDS2Ggra10063.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000862_pilon 105908..106167 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10063.t1.exon1Ggra10063.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 105280..105817 +
Ggra10063.t1.exon2Ggra10063.t1.exon2Gracilaria gracilis GNS1m maleexontig00000862_pilon 105908..106167 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10063.t1.intron1Ggra10063.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000862_pilon 105818..105907 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10063.t1.stop1Ggra10063.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 106165..106167 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10063.t1 ID=Ggra10063.t1|Name=Ggra10063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=266bp
MEPGRAPAKKTFASIPIASEVIVRTSDDEISNASGDDMVDDMDYSLELPN
DYELVVAKSEFDYEKWFGAHAQPGVKLGTFIDSKFARLSVGDSFGFDENN
NESEELKQPILCFLTANSCIVIRIDKRQRRKRESHSDHVSDMFWVPEVVA
EALEDPKVQKVAVGGDDELDLLFEYHGIQYLNKFWMRKESKVMSWEGIWS
AKRLLVDKWLGEEDKEVALAVLYAYAPFCTREKISDAAGMKRMNAAGGPD
DLEVLNGQIVEVGAG*
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spliced messenger RNA

>Ggra10063.t1 ID=Ggra10063.t1|Name=Ggra10063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00000862_pilon:105280..106167+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCAGGACGTGCACCAGCAAAAAAGACTTTCGCTAGCATACCGAT
AGCATCTGAGGTGATAGTGCGAACTAGTGATGATGAGATTTCAAATGCCT
CTGGTGACGACATGGTTGATGACATGGACTACAGTCTGGAGCTCCCAAAT
GACTATGAGCTCGTTGTCGCCAAAAGTGAATTCGATTATGAAAAATGGTT
TGGGGCCCACGCACAGCCAGGAGTCAAACTGGGAACCTTCATCGATTCGA
AGTTTGCGCGGCTCTCTGTTGGTGACAGCTTCGGGTTTGATGAGAATAAT
AATGAGTCAGAAGAGTTGAAACAACCAATACTGTGCTTTTTGACGGCAAA
CTCATGCATCGTAATACGAATTGATAAAAGGCAAAGGCGTAAGCGTGAGT
CCCATTCGGATCATGTCTCGGACATGTTCTGGGTGCCAGAGGTTGTAGCA
GAAGCACTGGAAGACCCAAAAGTACAGAAGGTTGCTGTAGGGGGCGATGA
TGAGCTTGATTTGCTTTTCGAATACCATGGAATCCAATACCTCAACAAAT
TTTGGATGCGGAAGGAGTCGAAAGTAATGAGTTGGGAAGGAATATGGTCA
GCAAAGCGTCTGTTGGTAGATAAATGGCTTGGGGAAGAAGATAAGGAAGT
AGCATTAGCAGTGTTGTACGCGTACGCCCCATTCTGTACGCGCGAGAAGA
TTTCTGATGCTGCAGGAATGAAGAGAATGAACGCTGCTGGTGGACCCGAT
GATCTAGAGGTTCTAAATGGGCAAATTGTTGAGGTGGGAGCAGGGTGA
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protein sequence of Ggra10063.t1

>Ggra10063.t1 ID=Ggra10063.t1|Name=Ggra10063.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MEPGRAPAKKTFASIPIASEVIVRTSDDEISNASGDDMVDDMDYSLELPN
DYELVVAKSEFDYEKWFGAHAQPGVKLGTFIDSKFARLSVGDSFGFDENN
NESEELKQPILCFLTANSCIVIRIDKRQRRKRESHSDHVSDMFWVPEVVA
EALEDPKVQKVAVGGDDELDLLFEYHGIQYLNKFWMRKESKVMSWEGIWS
AKRLLVDKWLGEEDKEVALAVLYAYAPFCTREKISDAAGMKRMNAAGGPD
DLEVLNGQIVEVGAG*
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mRNA from alignment at tig00000862_pilon:105280..106167+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10063.t1 ID=Ggra10063.t1|Name=Ggra10063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000862_pilon:105280..106167+ (Gracilaria gracilis GNS1m male)
ATGGAGCCAGGACGTGCACCAGCAAAAAAGACTTTCGCTAGCATACCGAT
AGCATCTGAGGTGATAGTGCGAACTAGTGATGATGAGATTTCAAATGCCT
CTGGTGACGACATGGTTGATGACATGGACTACAGTCTGGAGCTCCCAAAT
GACTATGAGCTCGTTGTCGCCAAAAGTGAATTCGATTATGAAAAATGGTT
TGGGGCCCACGCACAGCCAGGAGTCAAACTGGGAACCTTCATCGATTCGA
AGTTTGCGCGGCTCTCTGTTGGTGACAGCTTCGGGTTTGATGAGAATAAT
AATGAGTCAGAAGAGTTGAAACAACCAATACTGTGCTTTTTGACGGCAAA
CTCATGCATCGTAATACGAATTGATAAAAGGCAAAGGCGTAAGCGTGAGT
CCCATTCGGATCATGTCTCGGACATGTTCTGGGTGCCAGAGGTTGTAGCA
GAAGCACTGGAAGACCCAAAAGTACAGAAGGTTGCTGTAGGGGGCGATGA
TGAGCTTGATTTGCTTTTCGAATACCATGGAATCCAATGTGAGTCACTTT
AAGACATTGCTGTTTTATCTCTTTCCATGGCTGGGTACCGAAGAGTCGGA
GATTCTCAAGATCTGTTTTCCTTAAAAGACCTCAACAAATTTTGGATGCG
GAAGGAGTCGAAAGTAATGAGTTGGGAAGGAATATGGTCAGCAAAGCGTC
TGTTGGTAGATAAATGGCTTGGGGAAGAAGATAAGGAAGTAGCATTAGCA
GTGTTGTACGCGTACGCCCCATTCTGTACGCGCGAGAAGATTTCTGATGC
TGCAGGAATGAAGAGAATGAACGCTGCTGGTGGACCCGATGATCTAGAGG
TTCTAAATGGGCAAATTGTTGAGGTGGGAGCAGGGTGA
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Coding sequence (CDS) from alignment at tig00000862_pilon:105280..106167+

>Ggra10063.t1 ID=Ggra10063.t1|Name=Ggra10063.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00000862_pilon:105280..106167+ (Gracilaria gracilis GNS1m male)
ATGGAGCCAGGACGTGCACCAGCAAAAAAGACTTTCGCTAGCATACCGAT
AGCATCTGAGGTGATAGTGCGAACTAGTGATGATGAGATTTCAAATGCCT
CTGGTGACGACATGGTTGATGACATGGACTACAGTCTGGAGCTCCCAAAT
GACTATGAGCTCGTTGTCGCCAAAAGTGAATTCGATTATGAAAAATGGTT
TGGGGCCCACGCACAGCCAGGAGTCAAACTGGGAACCTTCATCGATTCGA
AGTTTGCGCGGCTCTCTGTTGGTGACAGCTTCGGGTTTGATGAGAATAAT
AATGAGTCAGAAGAGTTGAAACAACCAATACTGTGCTTTTTGACGGCAAA
CTCATGCATCGTAATACGAATTGATAAAAGGCAAAGGCGTAAGCGTGAGT
CCCATTCGGATCATGTCTCGGACATGTTCTGGGTGCCAGAGGTTGTAGCA
GAAGCACTGGAAGACCCAAAAGTACAGAAGGTTGCTGTAGGGGGCGATGA
TGAGCTTGATTTGCTTTTCGAATACCATGGAATCCAATACCTCAACAAAT
TTTGGATGCGGAAGGAGTCGAAAGTAATGAGTTGGGAAGGAATATGGTCA
GCAAAGCGTCTGTTGGTAGATAAATGGCTTGGGGAAGAAGATAAGGAAGT
AGCATTAGCAGTGTTGTACGCGTACGCCCCATTCTGTACGCGCGAGAAGA
TTTCTGATGCTGCAGGAATGAAGAGAATGAACGCTGCTGGTGGACCCGAT
GATCTAGAGGTTCTAAATGGGCAAATTGTTGAGGTGGGAGCAGGGTGA
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