Ggra10071.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10071.t1
Unique NameGgra10071.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:317120..317771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10071Ggra10071Gracilaria gracilis GNS1m malegenetig00000862_pilon 317120..317771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10071.t1Ggra10071.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 317120..317771 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10071.t1.stop1Ggra10071.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 317120..317122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10071.t1.CDS1Ggra10071.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 317120..317228 -
Ggra10071.t1.CDS2Ggra10071.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000862_pilon 317344..317461 -
Ggra10071.t1.CDS3Ggra10071.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000862_pilon 317636..317771 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10071.t1.exon1Ggra10071.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 317120..317228 -
Ggra10071.t1.exon2Ggra10071.t1.exon2Gracilaria gracilis GNS1m maleexontig00000862_pilon 317344..317461 -
Ggra10071.t1.exon3Ggra10071.t1.exon3Gracilaria gracilis GNS1m maleexontig00000862_pilon 317636..317771 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10071.t1.intron1Ggra10071.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000862_pilon 317229..317343 -
Ggra10071.t1.intron2Ggra10071.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000862_pilon 317462..317635 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10071.t1.start1Ggra10071.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 317769..317771 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10071.t1 ID=Ggra10071.t1|Name=Ggra10071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=121bp
MEAYRLRWHMTEDLRANSFLGPLVIDSSVGGFKNTAKAVTLLKSLALTDD
LNLLQLVRLAVLGRSLFWILPRFLSGYQLTIAESRQGHVHGAPLEFSASR
FEQEKSLASSTVTELVADPE*
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spliced messenger RNA

>Ggra10071.t1 ID=Ggra10071.t1|Name=Ggra10071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp|location=Sequence derived from alignment at tig00000862_pilon:317120..317771- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCATACAGATTGCGATGGCACATGACAGAGGACTTACGAGCAAA
TTCCTTTCTCGGACCTCTTGTTATCGACAGCTCGGTTGGGGGCTTCAAGA
ACACTGCCAAGGCCGTCACCTTGCTCAAGTCTCTTGCACTGACAGATGAC
TTGAACTTGCTTCAGTTGGTTCGACTTGCGGTTCTAGGGAGGTCATTGTT
CTGGATCTTACCGCGTTTCTTGAGCGGCTACCAGCTCACCATCGCCGAAA
GTCGCCAGGGTCATGTGCATGGGGCGCCGCTGGAGTTTTCGGCTTCTCGC
TTTGAACAGGAGAAGTCGTTGGCGTCATCCACAGTTACCGAGCTAGTTGC
TGATCCAGAGTGA
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protein sequence of Ggra10071.t1

>Ggra10071.t1 ID=Ggra10071.t1|Name=Ggra10071.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=121bp
MEAYRLRWHMTEDLRANSFLGPLVIDSSVGGFKNTAKAVTLLKSLALTDD
LNLLQLVRLAVLGRSLFWILPRFLSGYQLTIAESRQGHVHGAPLEFSASR
FEQEKSLASSTVTELVADPE*
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mRNA from alignment at tig00000862_pilon:317120..317771-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10071.t1 ID=Ggra10071.t1|Name=Ggra10071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=652bp|location=Sequence derived from alignment at tig00000862_pilon:317120..317771- (Gracilaria gracilis GNS1m male)
ATGGAAGCATACAGATTGCGATGGCACATGACAGAGGACTTACGAGCAAA
TTCCTTTCTCGGACCTCTTGTTATCGACAGCTCGGTTGGGGGCTTCAAGA
ACACTGCCAAGGCCGTCACCTTGCTCAAGTCTCTTGGTGCGTATATGCTT
GAAATGTACCATCTTTGCGAGTCAAGATAACTCGTACGACATCCCCTTGT
TTTACATCACAGGTCATCCATTCTTTACACAAAGCGATGGTCAGTTGTTG
ACCGGAAGCATGATCTGCGGTTCGCAACATCTTTGCGTCTGTATTGCTTG
TGACCTCTAGCACTGACAGATGACTTGAACTTGCTTCAGTTGGTTCGACT
TGCGGTTCTAGGGAGGTCATTGTTCTGGATCTTACCGCGTTTCTTGAGCG
GCTACCAGCTCACCATCGCCGAAAGTCGGTATCTGGTTGGAGGGGACAGC
TTTCCTAAACTTCGATTGGAAATGAGAAATGGGTGAAGGGCTTTCTCATA
CTATTGTAAGTCTTCAAAAATGCGACACCGGCCTTACGTTTAGCCAGGGT
CATGTGCATGGGGCGCCGCTGGAGTTTTCGGCTTCTCGCTTTGAACAGGA
GAAGTCGTTGGCGTCATCCACAGTTACCGAGCTAGTTGCTGATCCAGAGT
GA
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Coding sequence (CDS) from alignment at tig00000862_pilon:317120..317771-

>Ggra10071.t1 ID=Ggra10071.t1|Name=Ggra10071.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=363bp|location=Sequence derived from alignment at tig00000862_pilon:317120..317771- (Gracilaria gracilis GNS1m male)
ATGGAAGCATACAGATTGCGATGGCACATGACAGAGGACTTACGAGCAAA
TTCCTTTCTCGGACCTCTTGTTATCGACAGCTCGGTTGGGGGCTTCAAGA
ACACTGCCAAGGCCGTCACCTTGCTCAAGTCTCTTGCACTGACAGATGAC
TTGAACTTGCTTCAGTTGGTTCGACTTGCGGTTCTAGGGAGGTCATTGTT
CTGGATCTTACCGCGTTTCTTGAGCGGCTACCAGCTCACCATCGCCGAAA
GTCGCCAGGGTCATGTGCATGGGGCGCCGCTGGAGTTTTCGGCTTCTCGC
TTTGAACAGGAGAAGTCGTTGGCGTCATCCACAGTTACCGAGCTAGTTGC
TGATCCAGAGTGA
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