Ggra8978.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8978.t1
Unique NameGgra8978.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1039911..1040333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8364.ENSXETP00000005532
Preferred nameTXN
PFAMsThioredoxin
Max annot lvl33208|Metazoa
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0000122,GO:0000803,GO:0000806,GO:0001101,GO:0001678,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005929,GO:0006355,GO:0006357,GO:0006457,GO:0006950,GO:0006952,GO:0006979,GO:0007154,GO:0007165,GO:0007267,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008340,GO:0009314,GO:0009410,GO:0009605,GO:0009607,GO:0009611,GO:0009620,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010259,GO:0010269,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0014070,GO:0014823,GO:0015035,GO:0015036,GO:0015037,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019219,GO:0019220,GO:0019222,GO:0019725,GO:0019899,GO:0023051,GO:0023052,GO:0023056,GO:0030424,GO:0030425,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031960,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032386,GO:0032387,GO:0032501,GO:0032502,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033135,GO:0033138,GO:0033157,GO:0033158,GO:0033365,GO:0033500,GO:0033554,GO:0033674,GO:0033993,GO:0034284,GO:0034504,GO:0034599,GO:0034613,GO:0035690,GO:0036295,GO:0036296,GO:0036477,GO:0042221,GO:0042306,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043025,GO:0043085,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043388,GO:0043549,GO:0044093,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045185,GO:0045454,GO:0045859,GO:0045860,GO:0045892,GO:0045934,GO:0045937,GO:0046677,GO:0046822,GO:0046823,GO:0046825,GO:0046826,GO:0047134,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048678,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050832,GO:0050896,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051223,GO:0051224,GO:0051235,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051384,GO:0051457,GO:0051641,GO:0051651,GO:0051704,GO:0051707,GO:0051716,GO:0051896,GO:0051897,GO:0055082,GO:0055093,GO:0055114,GO:0060255,GO:0060341,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071236,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071453,GO:0071455,GO:0071548,GO:0072595,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0097066,GO:0097068,GO:0097237,GO:0097327,GO:0097447,GO:0097458,GO:0097730,GO:0098542,GO:0098754,GO:0098869,GO:0120025,GO:0120038,GO:1900180,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1901654,GO:1901698,GO:1901700,GO:1901701,GO:1902531,GO:1902533,GO:1902679,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904386,GO:1904589,GO:1904950,GO:1990748,GO:2000112,GO:2000113,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
Evalue6.62e-07
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota,3A886@33154|Opisthokonta,3BSYW@33208|Metazoa,3D9CV@33213|Bilateria,48FGA@7711|Chordata,49C5C@7742|Vertebrata
Descriptionglycerol ether metabolic process
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8978Ggra8978Gracilaria gracilis GNS1m malegenetig00000860_pilon 1039911..1040333 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8978.t1.stop1Ggra8978.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1039911..1039913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8978.t1.CDS1Ggra8978.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1039911..1040333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8978.t1.exon1Ggra8978.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1039911..1040333 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8978.t1.start1Ggra8978.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1040331..1040333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8978.t1Ggra8978.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1039911..1040333 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8978.t1 ID=Ggra8978.t1|Name=Ggra8978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=141bp
MTVSTPPPPPTPPPPTPPPPPPPSQRQQPLTATNIAEMRQLVEGSGSAYE
LTVVKVYSRRCRSCMRIARPFERMAAEFGDSVLFVSVCADEQHADVQYAL
LRELGIRSFPTFVLFNGGKRVDHFSTSCADTLRQHVQDWL*
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spliced messenger RNA

>Ggra8978.t1 ID=Ggra8978.t1|Name=Ggra8978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000860_pilon:1039911..1040333- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTGTCCACGCCGCCGCCGCCTCCCACGCCGCCGCCGCCCACACC
GCCGCCGCCGCCGCCGCCGTCGCAGCGGCAGCAGCCGCTGACGGCTACCA
ACATCGCCGAGATGCGCCAACTTGTGGAGGGCAGCGGCAGCGCGTACGAG
CTGACGGTCGTCAAGGTGTACTCGCGGCGCTGTCGCTCGTGTATGCGCAT
TGCGCGCCCGTTCGAACGCATGGCCGCCGAGTTTGGCGACAGCGTGCTGT
TTGTTAGCGTGTGTGCGGATGAGCAGCACGCGGACGTGCAGTACGCGCTG
TTGAGGGAGCTGGGTATTCGCAGTTTTCCGACGTTCGTGCTGTTCAACGG
CGGCAAGAGGGTGGATCATTTTTCTACCAGCTGTGCCGATACGTTGCGGC
AACATGTGCAAGATTGGTTGTGA
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protein sequence of Ggra8978.t1

>Ggra8978.t1 ID=Ggra8978.t1|Name=Ggra8978.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MTVSTPPPPPTPPPPTPPPPPPPSQRQQPLTATNIAEMRQLVEGSGSAYE
LTVVKVYSRRCRSCMRIARPFERMAAEFGDSVLFVSVCADEQHADVQYAL
LRELGIRSFPTFVLFNGGKRVDHFSTSCADTLRQHVQDWL*
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mRNA from alignment at tig00000860_pilon:1039911..1040333-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8978.t1 ID=Ggra8978.t1|Name=Ggra8978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000860_pilon:1039911..1040333- (Gracilaria gracilis GNS1m male)
ATGACGGTGTCCACGCCGCCGCCGCCTCCCACGCCGCCGCCGCCCACACC
GCCGCCGCCGCCGCCGCCGTCGCAGCGGCAGCAGCCGCTGACGGCTACCA
ACATCGCCGAGATGCGCCAACTTGTGGAGGGCAGCGGCAGCGCGTACGAG
CTGACGGTCGTCAAGGTGTACTCGCGGCGCTGTCGCTCGTGTATGCGCAT
TGCGCGCCCGTTCGAACGCATGGCCGCCGAGTTTGGCGACAGCGTGCTGT
TTGTTAGCGTGTGTGCGGATGAGCAGCACGCGGACGTGCAGTACGCGCTG
TTGAGGGAGCTGGGTATTCGCAGTTTTCCGACGTTCGTGCTGTTCAACGG
CGGCAAGAGGGTGGATCATTTTTCTACCAGCTGTGCCGATACGTTGCGGC
AACATGTGCAAGATTGGTTGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1039911..1040333-

>Ggra8978.t1 ID=Ggra8978.t1|Name=Ggra8978.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000860_pilon:1039911..1040333- (Gracilaria gracilis GNS1m male)
ATGACGGTGTCCACGCCGCCGCCGCCTCCCACGCCGCCGCCGCCCACACC
GCCGCCGCCGCCGCCGCCGTCGCAGCGGCAGCAGCCGCTGACGGCTACCA
ACATCGCCGAGATGCGCCAACTTGTGGAGGGCAGCGGCAGCGCGTACGAG
CTGACGGTCGTCAAGGTGTACTCGCGGCGCTGTCGCTCGTGTATGCGCAT
TGCGCGCCCGTTCGAACGCATGGCCGCCGAGTTTGGCGACAGCGTGCTGT
TTGTTAGCGTGTGTGCGGATGAGCAGCACGCGGACGTGCAGTACGCGCTG
TTGAGGGAGCTGGGTATTCGCAGTTTTCCGACGTTCGTGCTGTTCAACGG
CGGCAAGAGGGTGGATCATTTTTCTACCAGCTGTGCCGATACGTTGCGGC
AACATGTGCAAGATTGGTTGTGA
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