Ggra9015.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9015.t1
Unique NameGgra9015.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1599
Homology
BLAST of Ggra9015.t1 vs. uniprot
Match: A0A2V3INI9 (C3HC-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INI9_9FLOR)

HSP 1 Score: 595 bits (1534), Expect = 2.130e-181
Identity = 571/1669 (34.21%), Postives = 824/1669 (49.37%), Query Frame = 0
Query:    1 MAPEKDDDVERAVEADQTDESQRDAAQPDLDPGVIEVEEEAIDVDAV----DEEDNERKSSGDEDPNAVDLVSSSPGAAVQADVDVIDLEEPGXXXXXXXXXXXXXXXXXXXXXXXXXEEQEKRLDDEDASRE----QGVMKKDV--MEVGPSKDADHKDGENTQ-----PHTQQETKQIAIQNEADDKQEVQASENEQKQPPMDASAADSCLKKDLYLNLNNEMNVGEAKH--VSAVPPARTEEDRDSGGL---ITHGEDEECGDNVHTPALPQDDDKSESNVEK-DRPTEE--------------MVKATENLSQQIVQV--EPAGSIAPENGTGAHGVGMSASETMSDVIIPPVEEAASTLTKKKMGGSGEKVASEPISDVRAPVHEPVGDRDNAGQVDETAPEVMKEEIPSADASMKEFRAIEGSEAKSGDVMDMEDAEEDEHENVIEEEHEHMDDENGNADMELSEEEPAHDLQGDGEQLSEPRANTNQHDVEITSMEADHKTASVPADEDGTEEAVDSGKQIEDLATGEVNEKGE---GGVEHKASLTPGKEIANLKQSDSVACVQGSNVIGMEVTNAPKASMSDAPDLMIANLPVVDGKEMDVSTS----DKKEAEVLSG---------PDGPDAIGGSPSSNLTAPLFGMRPSGFPVQPVSFRTPPSFQRTSLSPNARPFIPAAHREAMRIAALPSPLSKDEIASVAFPVAMDKEDAKETPAVDEPQSKE--AEGKPLFSPQQAAVPLQSKSPSV--LAQEPVSIPSTSPLPDTQPVKQSANKEDMAIAETSQLVLTVQPVPPSLDAESKPVSARKAPALKVRKDSIVKHPSKPQGKKVTFNVTDTKVAEPTEPRAAPAHSESSGGGTAESGKEGKLEEQGLKEEKSDDGFMYEVSHVPLSVRIGNGNVIKRGSLSTLRLTVAKSGEAKLDMFKEGASSLLLFESLSASRNILRVRKVSNRPIMTVTLMSNNNGGTQVAKKYYVHLGHHLYEKVFKACVAHLNSTSPDRRTGTEPSASATPVTKRLSTPVGSDGEDVQAIGTKRTADGARTADSKRFKAAERRRKLXXXXXXXXXNLKAARKNKASSGSGETDRGPDKPTPGASNLPGVAAHASTSKPP-----IGQVVPKTPLQMTAKSGGQKSATAISTAGPVKSADQSTQKTKPAEAIVHASPVVSEKRKHLAEKHSLPVRQKEVIEDKMQTDTQQERLPTSEGRLLPPPSSTLKRKKPA-SLSVQKTAQGKRAFDEGKSMDSKRQRTANEKSSSAVATPSATLE-KLKALREQAKTGMGASAKGRAAASTSKPAPTRPSLEDMEEVKRMKSMIGSLLKEKNEAAKQ--------ATAIEQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELEKKLEDAVAAVNKSKEEEKELWAKVSDMLNVVNAAQSAVANDEDKEEQKKISLSRCDHNNVEDFFCRLRTFKPSTWPV-EEADIGALACARHGWYNSGVNELKSSDGVTLLLGDLFENCEVYMRKIEEMKTALVQKHALLSGWRGRQCSRDIGKELLSREALVSNASELKEHAAVKRVRGFKDTSKNVCELMAACGWKACETGVRCEWCGVVVGEEVHLKESHYQFCMFFREEIEVRRNAELLGLDWEVEGARLGWFFRSTYGDAMD 1596
            M PE +D VE+  + D       +  QPD DPGVI+V++E I         DE   E  +  D+  + ++LV+  P A VQ DVDVIDLEE                            E + ++DDED   +    +G +++D    ++  +   +H DGE  +       ++ E+    +  E+D + E    E E   P  D       L      N  +E       +  V A P  +TE+D     +   I    DE+  D   +  +P +  K  ++VEK  R T E              + +A E  + Q+     +       +    A+G    A E      +  + E A T  ++    + ++   E +      +   +  ++++   D    +  K  +    A   E    + + +KS  V D+ED +++E   V+EE+       N + D +L+++EP  D Q +       +  +++ D E T    D++              + +  +  D    E +   E     V+  + +        L+  ++V  V  +N    EV +    S S+   L    L   +GK    +T+    D+ EA+ ++          P    +  GS ++NLTAPLFGM+    P  PVSF +PPSFQR+ LSP+A PFIPAAHR+A R A   + L       V      DK   ++   +  P  KE  A G  L  P++   P  +  PSV  L+   VS P   P+P T  V QS     +  +E                                 KDS  K  SK Q +KVTF   +T      + R +P          + SG E +++EQ LK+E++D+G MYEVSHVP+SVRIGNG  IKR SLSTLRL ++KSGEAKL+MFKE ASSLLLFESLS +RN +R+RKV+ R +MTVTLM+NNNGG QVAKKYYVHLG H+Y+K+F   V HLN   P R   + P  S+    KR +   GSD E  +++  KR+ +     D KR K AERRR+L         NLKA RKNKA +G        D P  G S    +   A+T  PP       Q+ P   +  T +S    S  + + A P  +   +   +     I H     + K  +          +    +D+     Q        G+ L  PS++ + K+P     + +   G+      +S + K+ R   EK+ +A +  +  ++ KLK LR++A+       +G    S + P   R    + +EVK ++ ++   +  + EA KQ        ATA E+ +  XXXXXXXXXXXXXXXXXXXXXXXXXXX       E+E  L    A    S  ++ EL A+VS +L  +   ++ +A    +E   K S SRCDHNNV DFF RL +FKPSTWPV E++DIGA ACARHGWYNS V+ L+S+DGV L L DL+++ +V++ +++ + TALVQ+H  LSGWRG+QC+RDIGKELL RE L+ N SE+++H   KRVRGF + +  +CEL+AACGWK     VRCEWCG+V   ++HL+ESHY+FCMF  E+ EVRRN ELLGLDWEVEG RLGWFFRS+YGD +D
Sbjct:    1 MVPENEDAVEKVAQPDL-----ENLPQPDTDPGVIDVDDEGIXXXXXXXXEDECKGEENAVVDDAGSTINLVTPPPDARVQKDVDVIDLEEADEEGVP---------------------EGDAQVDDEDGEAQTVGGRGTLEEDGEDSDIHDASKGNHDDGEEDEGTPRVDASKDESGDEILPVESDGQTENVEHEIEHDNP--DNQKGREALSITPVENQQHEARPQLVSNSGVFANPSEQTEQDIGEETVTEEIAPLPDEKTKDTEKSEHVPSESQKLLTSVEKVSRETTEAEGGPVQHPSSTVPVTEANERAAFQLFSAVRDDVLQTTSDATNDANGQDPGAVEPDEKDNVAQIAELAPTEPQESRTLAAKESREEGLDAEHLKLSGDMKPQESSSAADSETGKAQK--VADDAAGENEVDETQEAHSKSEGVSDLEDGDDEE---VVEED-------NMDMDADLTDDEPVQDEQPNTLDRKPEKLESSKTDTEFTE---DNQXXXXXXXXXXXXXVLTAKSENNDAVHSEKHRDMEIVQKDVDDGSGMLAINTKDQLRAVETVDEVHKTNAPDTEVVSHGDTSFSEKSSLSNNKL---EGKPTTAATAESIRDEGEAQEVTDSNSKMDIDTPSKDMSFKGSANTNLTAPLFGMQTMELPKFPVSFSSPPSFQRSRLSPSAPPFIPAAHRDANRAATPQTELDSTSHMDVDSSRTEDKP-TEQLKTMLAPAFKESAARGSQL-KPEKICPPSSASPPSVPHLSSAKVSNP---PVPQTAGVSQSVAPGGIPQSE---------------------------------KDSF-KEESKAQERKVTFGSIETITVPKADSRQSPTRPAQD----SISGSEPRVDEQELKDEETDEGSMYEVSHVPISVRIGNGTAIKRDSLSTLRLAISKSGEAKLEMFKEAASSLLLFESLSNTRNTIRIRKVAKRTVMTVTLMTNNNGGAQVAKKYYVHLGKHIYDKLFNIFVIHLNEAGPARPVQSAPLNSSG---KRAAPSSGSDAEGTKSVPGKRSLEVTDKKDPKRVKVAERRRQLLETKAKLLENLKAVRKNKAGTGV------KDHPATGKS----LKRTAATPVPPPSLSTSSQLKPS--VSTTPRSTAPPSGASSTPAPPATTIQGTASHSDNPSTIAHGFDSTALKTPN----------KNNTTKDETAVGGQAGISKLKSGQPLQAPSTSTRGKRPRPEQQLHRLQPGQNQSTGQESNNVKKMRVTEEKAQAAASVSNPNMQGKLKFLRDRAR-------RGGYGGSAATPVAGRRDPTESDEVKNLRILLNEKISSQTEAEKQKLEAMKGMATAKEETKMAXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDERK-EMENVLTAKRAESELSSRQKNELSAEVSKLLKHM---ETVLAAGSPRENLNKESFSRCDHNNVSDFFDRLHSFKPSTWPVMEDSDIGARACARHGWYNSDVDVLRSTDGVELRLRDLYDDVDVHLEEVQRVTTALVQEHQFLSGWRGKQCARDIGKELLDRETLIKNVSEIQKHDVKKRVRGFGERADRLCELIAACGWKPHGKAVRCEWCGIVAVGDLHLRESHYKFCMFAEEQDEVRRNIELLGLDWEVEGDRLGWFFRSSYGDVVD 1544          
BLAST of Ggra9015.t1 vs. uniprot
Match: R7QSH1 (C3HC-type domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QSH1_CHOCR)

HSP 1 Score: 102 bits (254), Expect = 6.070e-18
Identity = 89/277 (32.13%), Postives = 131/277 (47.29%), Query Frame = 0
Query: 1340 AVNKSKEEEKELWAKVSDMLNVVNAAQSAVANDEDKEEQKKISLSRCDHNNVEDFFCRLRTFKPSTWP--VEEADIGALACARHGWYNSGVNELKSSDG--VTLLLGDLFENCEVYMRKIEEMKTALVQK-HALLSGWRGRQC-----SRDIGKELLSREALVSNASELKEHAAVKRVRGFKDTSKNVCEL----------MAACGWKAC----ETGVRCEWCGVVV-----------GE---EVHLKESHYQFCMFFREEIEVRRNAELLGLDWEV 1578
            +VN S EE++        + +V+ A +SAV +    E  K  SLSRC+  NV DFF RL TF+PSTW        +  + CARHGW+NSG++EL SS+G  +T      F++  +   +IE ++  +V   H LLSGW G        S +  K   +   L +NA +L E   V  +   +D+   +             +A   WKA     +  + C+WCG  V           G+   E  +  SHY FC F  E  E +RNAE++ +   V
Sbjct: 1391 SVNISLEEKEAFELDGKRLTDVLAAIKSAVKSAGIGEAHKPASLSRCEPKNVSDFFDRLHTFRPSTWRGFARGHALSPVECARHGWHNSGIDELTSSEGSVITTKFETCFDSASM-KAEIERVRKLVVGGGHRLLSGWIGESSPFEFESLEGSKRTCNAAQLKTNAKQL-ESTRVVEILANRDSDSGLSSKDLSAADKYGRLACYNWKARGSEEDLDLYCDWCGRSVLLTPEDMVRSGGKGCVEFDVATSHYVFCPFRGE--EGKRNAEVMRMSLAV 1663          
The following BLAST results are available for this feature:
BLAST of Ggra9015.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INI92.130e-18134.21C3HC-type domain-containing protein n=1 Tax=Gracil... [more]
R7QSH16.070e-1832.13C3HC-type domain-containing protein n=2 Tax=Chondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1271..1347
NoneNo IPR availableCOILSCoilCoilcoord: 1008..1034
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 999..1030
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..446
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 667..839
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1190..1207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 351..399
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 696..750
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1079..1114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 667..686
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 957..978
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1256..1273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 769..783
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..518
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 957..1278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 823..839
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 462..508
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1122..1153
IPR012935Zinc finger, C3HC-likePFAMPF07967zf-C3HCcoord: 1390..1486
e-value: 4.0E-9
score: 36.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1156182..1160978 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9015.t1Ggra9015.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1156182..1160978 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9015.t1 ID=Ggra9015.t1|Name=Ggra9015.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1599bp
MAPEKDDDVERAVEADQTDESQRDAAQPDLDPGVIEVEEEAIDVDAVDEE
DNERKSSGDEDPNAVDLVSSSPGAAVQADVDVIDLEEPGEDGEDGEDGEP
GGEGEEGEESEEGGEEQEKRLDDEDASREQGVMKKDVMEVGPSKDADHKD
GENTQPHTQQETKQIAIQNEADDKQEVQASENEQKQPPMDASAADSCLKK
DLYLNLNNEMNVGEAKHVSAVPPARTEEDRDSGGLITHGEDEECGDNVHT
PALPQDDDKSESNVEKDRPTEEMVKATENLSQQIVQVEPAGSIAPENGTG
AHGVGMSASETMSDVIIPPVEEAASTLTKKKMGGSGEKVASEPISDVRAP
VHEPVGDRDNAGQVDETAPEVMKEEIPSADASMKEFRAIEGSEAKSGDVM
DMEDAEEDEHENVIEEEHEHMDDENGNADMELSEEEPAHDLQGDGEQLSE
PRANTNQHDVEITSMEADHKTASVPADEDGTEEAVDSGKQIEDLATGEVN
EKGEGGVEHKASLTPGKEIANLKQSDSVACVQGSNVIGMEVTNAPKASMS
DAPDLMIANLPVVDGKEMDVSTSDKKEAEVLSGPDGPDAIGGSPSSNLTA
PLFGMRPSGFPVQPVSFRTPPSFQRTSLSPNARPFIPAAHREAMRIAALP
SPLSKDEIASVAFPVAMDKEDAKETPAVDEPQSKEAEGKPLFSPQQAAVP
LQSKSPSVLAQEPVSIPSTSPLPDTQPVKQSANKEDMAIAETSQLVLTVQ
PVPPSLDAESKPVSARKAPALKVRKDSIVKHPSKPQGKKVTFNVTDTKVA
EPTEPRAAPAHSESSGGGTAESGKEGKLEEQGLKEEKSDDGFMYEVSHVP
LSVRIGNGNVIKRGSLSTLRLTVAKSGEAKLDMFKEGASSLLLFESLSAS
RNILRVRKVSNRPIMTVTLMSNNNGGTQVAKKYYVHLGHHLYEKVFKACV
AHLNSTSPDRRTGTEPSASATPVTKRLSTPVGSDGEDVQAIGTKRTADGA
RTADSKRFKAAERRRKLLETKAKLLENLKAARKNKASSGSGETDRGPDKP
TPGASNLPGVAAHASTSKPPIGQVVPKTPLQMTAKSGGQKSATAISTAGP
VKSADQSTQKTKPAEAIVHASPVVSEKRKHLAEKHSLPVRQKEVIEDKMQ
TDTQQERLPTSEGRLLPPPSSTLKRKKPASLSVQKTAQGKRAFDEGKSMD
SKRQRTANEKSSSAVATPSATLEKLKALREQAKTGMGASAKGRAAASTSK
PAPTRPSLEDMEEVKRMKSMIGSLLKEKNEAAKQATAIEQQRKKDLENME
RLQKALSQANSETAESRKEATKLAEKRKELEKKLEDAVAAVNKSKEEEKE
LWAKVSDMLNVVNAAQSAVANDEDKEEQKKISLSRCDHNNVEDFFCRLRT
FKPSTWPVEEADIGALACARHGWYNSGVNELKSSDGVTLLLGDLFENCEV
YMRKIEEMKTALVQKHALLSGWRGRQCSRDIGKELLSREALVSNASELKE
HAAVKRVRGFKDTSKNVCELMAACGWKACETGVRCEWCGVVVGEEVHLKE
SHYQFCMFFREEIEVRRNAELLGLDWEVEGARLGWFFRSTYGDAMDEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012935Znf_C3HC-like