Ggra4321.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4321.t1
Unique NameGgra4321.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:649605..650072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13037.EHJ64838
PFAMsDUF3421
Max annot lvl33208|Metazoa
Evalue1.26e-24
EggNOG OGs2B0IP@1|root,2S083@2759|Eukaryota,3A1RQ@33154|Opisthokonta,3BQAE@33208|Metazoa,3D824@33213|Bilateria,41ZKJ@6656|Arthropoda
DescriptionProtein of unknown function (DUF3421)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4321Ggra4321Gracilaria gracilis GNS1m malegenetig00000022_pilon 649605..650072 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4321.t1.start1Ggra4321.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 649605..649607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4321.t1.CDS1Ggra4321.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 649605..650072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4321.t1.exon1Ggra4321.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 649605..650072 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4321.t1.stop1Ggra4321.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 650070..650072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4321.t1Ggra4321.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 649605..650072 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4321.t1 ID=Ggra4321.t1|Name=Ggra4321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=156bp
MATFTWVKFTGGELPANLLVAGNRYNGETLNICRVEYEGMVIPGKFWTIG
KKAYFPYDGKEVKVVECELLTCDKPDLVEWVSATSGKIANGSIAAGHEAH
GGATYLGRGKQSNELIPGKIDPTRNACFVSTQNKEWDLSEYEVLVCKSFS
SLTTA*
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spliced messenger RNA

>Ggra4321.t1 ID=Ggra4321.t1|Name=Ggra4321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000022_pilon:649605..650072+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACTTTCACTTGGGTAAAGTTCACCGGCGGAGAGCTGCCCGCCAA
CTTGCTGGTGGCCGGTAACCGCTACAATGGCGAGACACTTAACATCTGTC
GTGTAGAGTACGAGGGCATGGTGATACCGGGTAAGTTCTGGACGATTGGA
AAGAAAGCATACTTCCCCTACGACGGCAAGGAGGTGAAAGTGGTTGAGTG
TGAGCTGTTGACGTGCGACAAACCGGACTTGGTGGAATGGGTGTCCGCGA
CGTCTGGAAAGATTGCAAACGGCTCTATTGCCGCCGGGCATGAAGCGCAC
GGAGGCGCTACGTACCTCGGGCGAGGGAAGCAGAGCAATGAGTTGATTCC
TGGGAAGATCGACCCGACGCGTAACGCGTGCTTCGTTAGCACGCAGAACA
AGGAGTGGGATCTGAGCGAATACGAAGTGCTTGTTTGTAAGAGCTTTTCC
TCCCTGACTACGGCGTAG
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protein sequence of Ggra4321.t1

>Ggra4321.t1 ID=Ggra4321.t1|Name=Ggra4321.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=156bp
MATFTWVKFTGGELPANLLVAGNRYNGETLNICRVEYEGMVIPGKFWTIG
KKAYFPYDGKEVKVVECELLTCDKPDLVEWVSATSGKIANGSIAAGHEAH
GGATYLGRGKQSNELIPGKIDPTRNACFVSTQNKEWDLSEYEVLVCKSFS
SLTTA*
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mRNA from alignment at tig00000022_pilon:649605..650072+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4321.t1 ID=Ggra4321.t1|Name=Ggra4321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000022_pilon:649605..650072+ (Gracilaria gracilis GNS1m male)
ATGGCCACTTTCACTTGGGTAAAGTTCACCGGCGGAGAGCTGCCCGCCAA
CTTGCTGGTGGCCGGTAACCGCTACAATGGCGAGACACTTAACATCTGTC
GTGTAGAGTACGAGGGCATGGTGATACCGGGTAAGTTCTGGACGATTGGA
AAGAAAGCATACTTCCCCTACGACGGCAAGGAGGTGAAAGTGGTTGAGTG
TGAGCTGTTGACGTGCGACAAACCGGACTTGGTGGAATGGGTGTCCGCGA
CGTCTGGAAAGATTGCAAACGGCTCTATTGCCGCCGGGCATGAAGCGCAC
GGAGGCGCTACGTACCTCGGGCGAGGGAAGCAGAGCAATGAGTTGATTCC
TGGGAAGATCGACCCGACGCGTAACGCGTGCTTCGTTAGCACGCAGAACA
AGGAGTGGGATCTGAGCGAATACGAAGTGCTTGTTTGTAAGAGCTTTTCC
TCCCTGACTACGGCGTAG
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Coding sequence (CDS) from alignment at tig00000022_pilon:649605..650072+

>Ggra4321.t1 ID=Ggra4321.t1|Name=Ggra4321.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=468bp|location=Sequence derived from alignment at tig00000022_pilon:649605..650072+ (Gracilaria gracilis GNS1m male)
ATGGCCACTTTCACTTGGGTAAAGTTCACCGGCGGAGAGCTGCCCGCCAA
CTTGCTGGTGGCCGGTAACCGCTACAATGGCGAGACACTTAACATCTGTC
GTGTAGAGTACGAGGGCATGGTGATACCGGGTAAGTTCTGGACGATTGGA
AAGAAAGCATACTTCCCCTACGACGGCAAGGAGGTGAAAGTGGTTGAGTG
TGAGCTGTTGACGTGCGACAAACCGGACTTGGTGGAATGGGTGTCCGCGA
CGTCTGGAAAGATTGCAAACGGCTCTATTGCCGCCGGGCATGAAGCGCAC
GGAGGCGCTACGTACCTCGGGCGAGGGAAGCAGAGCAATGAGTTGATTCC
TGGGAAGATCGACCCGACGCGTAACGCGTGCTTCGTTAGCACGCAGAACA
AGGAGTGGGATCTGAGCGAATACGAAGTGCTTGTTTGTAAGAGCTTTTCC
TCCCTGACTACGGCGTAG
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