Ggra9029.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9029.t1
Unique NameGgra9029.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1318016..1319164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15722826
PFAMsVWA,Zona_pellucida
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005576,GO:0031012,GO:0044420,GO:0044421,GO:0060102,GO:0060103,GO:0060111,GO:0062023
Evalue1.1e-09
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota,39ZNW@33154|Opisthokonta,3BMN1@33208|Metazoa
Descriptionvon Willebrand factor (vWF) type A domain
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9029Ggra9029Gracilaria gracilis GNS1m malegenetig00000860_pilon 1318016..1319164 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9029.t1.start1Ggra9029.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1318016..1318018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9029.t1.CDS1Ggra9029.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1318016..1319164 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9029.t1.exon1Ggra9029.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1318016..1319164 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9029.t1.stop1Ggra9029.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1319162..1319164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9029.t1Ggra9029.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1318016..1319164 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9029.t1 ID=Ggra9029.t1|Name=Ggra9029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MISSVFSFSVALLALSVSIGTAALTIRQSNGANATSDCKIDSICFAIDQS
GSIVYYEFYKDEKQFVINLSREIGKRTQGTQYSAVGFSNQAVPIQESTML
LETEFVPAVRDTSPVSGGTNMFAGLESCFSEVASSNGNRVIVLVTDGVDF
GSKAPIDLAQDIKSEGISIVTIGIGNGIREEDLKEIATTGEFFVSTTFNT
LQSDVLKITERSCDVVDVEPETPVPPSPEPVKDVCDQAYSVCEFYFANEN
SVPSFSMDGPDNVPFTPIVESRDMNERLGVLNSNDIMVEIIGDDESITGI
TSLAASQRFSPSQFKPFTWSNGKGSGIGHETFQGNQKEMVRGRCVRVFFS
QFQLLQLSAPFNVVSNEVASRKDNKCLVFRTM*
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spliced messenger RNA

>Ggra9029.t1 ID=Ggra9029.t1|Name=Ggra9029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000860_pilon:1318016..1319164+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCCTCTGTCTTCTCATTTTCCGTTGCTCTCTTGGCTCTATCGGT
GAGCATTGGCACCGCTGCACTGACAATTCGCCAAAGCAATGGAGCAAACG
CCACTTCCGACTGTAAAATTGACTCGATCTGTTTCGCGATCGACCAAAGC
GGCTCAATCGTATACTATGAGTTTTATAAAGATGAGAAGCAGTTTGTTAT
CAACCTATCTCGAGAAATAGGCAAGCGCACACAAGGTACACAGTACTCGG
CTGTTGGATTCTCCAACCAAGCAGTCCCCATACAAGAAAGCACCATGCTC
CTGGAAACGGAGTTTGTTCCGGCAGTGAGGGACACAAGCCCTGTTTCTGG
TGGCACAAACATGTTCGCTGGACTTGAGAGTTGTTTTAGTGAAGTTGCTT
CTTCAAACGGAAATCGCGTTATTGTGCTTGTCACTGATGGAGTTGATTTT
GGAAGCAAAGCGCCAATTGATCTGGCACAGGACATCAAGTCAGAGGGAAT
TTCTATTGTCACCATTGGCATTGGAAATGGTATACGGGAGGAAGACTTGA
AGGAGATAGCTACCACTGGGGAATTTTTCGTGAGCACTACCTTCAACACA
TTACAATCTGATGTTCTTAAGATTACGGAACGCTCATGTGACGTGGTTGA
CGTGGAGCCCGAGACTCCGGTACCACCCTCTCCGGAGCCCGTTAAGGACG
TGTGTGACCAGGCATATAGTGTTTGCGAATTCTACTTTGCTAATGAGAAC
AGTGTACCCTCTTTCTCCATGGACGGACCCGATAATGTGCCGTTCACACC
CATCGTGGAGTCGAGAGATATGAATGAGCGTCTAGGGGTGCTGAACAGTA
ATGATATCATGGTTGAGATTATCGGAGATGATGAAAGCATTACCGGGATC
ACGTCTCTGGCGGCATCACAGCGGTTCTCTCCGTCTCAGTTCAAGCCGTT
CACGTGGTCCAATGGAAAAGGTTCTGGAATTGGACATGAAACGTTCCAAG
GCAACCAGAAAGAGATGGTGAGGGGGCGATGTGTGCGTGTGTTCTTTTCG
CAGTTCCAGCTTCTGCAGCTGAGTGCGCCATTCAACGTTGTGTCGAACGA
AGTGGCCAGTCGAAAGGACAACAAATGCTTGGTTTTCAGAACCATGTGA
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protein sequence of Ggra9029.t1

>Ggra9029.t1 ID=Ggra9029.t1|Name=Ggra9029.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MISSVFSFSVALLALSVSIGTAALTIRQSNGANATSDCKIDSICFAIDQS
GSIVYYEFYKDEKQFVINLSREIGKRTQGTQYSAVGFSNQAVPIQESTML
LETEFVPAVRDTSPVSGGTNMFAGLESCFSEVASSNGNRVIVLVTDGVDF
GSKAPIDLAQDIKSEGISIVTIGIGNGIREEDLKEIATTGEFFVSTTFNT
LQSDVLKITERSCDVVDVEPETPVPPSPEPVKDVCDQAYSVCEFYFANEN
SVPSFSMDGPDNVPFTPIVESRDMNERLGVLNSNDIMVEIIGDDESITGI
TSLAASQRFSPSQFKPFTWSNGKGSGIGHETFQGNQKEMVRGRCVRVFFS
QFQLLQLSAPFNVVSNEVASRKDNKCLVFRTM*
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mRNA from alignment at tig00000860_pilon:1318016..1319164+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9029.t1 ID=Ggra9029.t1|Name=Ggra9029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000860_pilon:1318016..1319164+ (Gracilaria gracilis GNS1m male)
ATGATTTCCTCTGTCTTCTCATTTTCCGTTGCTCTCTTGGCTCTATCGGT
GAGCATTGGCACCGCTGCACTGACAATTCGCCAAAGCAATGGAGCAAACG
CCACTTCCGACTGTAAAATTGACTCGATCTGTTTCGCGATCGACCAAAGC
GGCTCAATCGTATACTATGAGTTTTATAAAGATGAGAAGCAGTTTGTTAT
CAACCTATCTCGAGAAATAGGCAAGCGCACACAAGGTACACAGTACTCGG
CTGTTGGATTCTCCAACCAAGCAGTCCCCATACAAGAAAGCACCATGCTC
CTGGAAACGGAGTTTGTTCCGGCAGTGAGGGACACAAGCCCTGTTTCTGG
TGGCACAAACATGTTCGCTGGACTTGAGAGTTGTTTTAGTGAAGTTGCTT
CTTCAAACGGAAATCGCGTTATTGTGCTTGTCACTGATGGAGTTGATTTT
GGAAGCAAAGCGCCAATTGATCTGGCACAGGACATCAAGTCAGAGGGAAT
TTCTATTGTCACCATTGGCATTGGAAATGGTATACGGGAGGAAGACTTGA
AGGAGATAGCTACCACTGGGGAATTTTTCGTGAGCACTACCTTCAACACA
TTACAATCTGATGTTCTTAAGATTACGGAACGCTCATGTGACGTGGTTGA
CGTGGAGCCCGAGACTCCGGTACCACCCTCTCCGGAGCCCGTTAAGGACG
TGTGTGACCAGGCATATAGTGTTTGCGAATTCTACTTTGCTAATGAGAAC
AGTGTACCCTCTTTCTCCATGGACGGACCCGATAATGTGCCGTTCACACC
CATCGTGGAGTCGAGAGATATGAATGAGCGTCTAGGGGTGCTGAACAGTA
ATGATATCATGGTTGAGATTATCGGAGATGATGAAAGCATTACCGGGATC
ACGTCTCTGGCGGCATCACAGCGGTTCTCTCCGTCTCAGTTCAAGCCGTT
CACGTGGTCCAATGGAAAAGGTTCTGGAATTGGACATGAAACGTTCCAAG
GCAACCAGAAAGAGATGGTGAGGGGGCGATGTGTGCGTGTGTTCTTTTCG
CAGTTCCAGCTTCTGCAGCTGAGTGCGCCATTCAACGTTGTGTCGAACGA
AGTGGCCAGTCGAAAGGACAACAAATGCTTGGTTTTCAGAACCATGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1318016..1319164+

>Ggra9029.t1 ID=Ggra9029.t1|Name=Ggra9029.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000860_pilon:1318016..1319164+ (Gracilaria gracilis GNS1m male)
ATGATTTCCTCTGTCTTCTCATTTTCCGTTGCTCTCTTGGCTCTATCGGT
GAGCATTGGCACCGCTGCACTGACAATTCGCCAAAGCAATGGAGCAAACG
CCACTTCCGACTGTAAAATTGACTCGATCTGTTTCGCGATCGACCAAAGC
GGCTCAATCGTATACTATGAGTTTTATAAAGATGAGAAGCAGTTTGTTAT
CAACCTATCTCGAGAAATAGGCAAGCGCACACAAGGTACACAGTACTCGG
CTGTTGGATTCTCCAACCAAGCAGTCCCCATACAAGAAAGCACCATGCTC
CTGGAAACGGAGTTTGTTCCGGCAGTGAGGGACACAAGCCCTGTTTCTGG
TGGCACAAACATGTTCGCTGGACTTGAGAGTTGTTTTAGTGAAGTTGCTT
CTTCAAACGGAAATCGCGTTATTGTGCTTGTCACTGATGGAGTTGATTTT
GGAAGCAAAGCGCCAATTGATCTGGCACAGGACATCAAGTCAGAGGGAAT
TTCTATTGTCACCATTGGCATTGGAAATGGTATACGGGAGGAAGACTTGA
AGGAGATAGCTACCACTGGGGAATTTTTCGTGAGCACTACCTTCAACACA
TTACAATCTGATGTTCTTAAGATTACGGAACGCTCATGTGACGTGGTTGA
CGTGGAGCCCGAGACTCCGGTACCACCCTCTCCGGAGCCCGTTAAGGACG
TGTGTGACCAGGCATATAGTGTTTGCGAATTCTACTTTGCTAATGAGAAC
AGTGTACCCTCTTTCTCCATGGACGGACCCGATAATGTGCCGTTCACACC
CATCGTGGAGTCGAGAGATATGAATGAGCGTCTAGGGGTGCTGAACAGTA
ATGATATCATGGTTGAGATTATCGGAGATGATGAAAGCATTACCGGGATC
ACGTCTCTGGCGGCATCACAGCGGTTCTCTCCGTCTCAGTTCAAGCCGTT
CACGTGGTCCAATGGAAAAGGTTCTGGAATTGGACATGAAACGTTCCAAG
GCAACCAGAAAGAGATGGTGAGGGGGCGATGTGTGCGTGTGTTCTTTTCG
CAGTTCCAGCTTCTGCAGCTGAGTGCGCCATTCAACGTTGTGTCGAACGA
AGTGGCCAGTCGAAAGGACAACAAATGCTTGGTTTTCAGAACCATGTGA
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