Ggra8964.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8964.t1
Unique Name	Ggra8964.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	232

Homology

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A2V3IZ64 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ64_9FLOR)

HSP 1 Score: 221 bits (564), Expect = 6.900e-69
Identity = 105/144 (72.92%), Postives = 119/144 (82.64%), Query Frame = 0

Query:   49 PEYQLMPGEIAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASKAKNPMARFENMDTEYVARAAPKVRGAFTRTVDCRACDTVGVVQC 192
            P YQLMPGEIAVRFINTPSG EV+AAA VGDNLL V DSV +HIPRACQ+G+CGSCTCD++D S+ DGRQTVRACQT AVP DGS ELVVDVAR KT S  KNPMARFEN+DTEYVA AAP+ +GAF R ++C  C + G + C
Sbjct:   95 PPYQLMPGEIAVRFINTPSGNEVIAAANVGDNLLNVSDSVGVHIPRACQSGLCGSCTCDIVDVSAQDGRQTVRACQTAAVPVDGSRELVVDVARTKTTSAGKNPMARFENLDTEYVAGAAPRRKGAFVRQMECSTCSSKGDLIC 238

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A5J4Z3Q4 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3Q4_PORPP)

HSP 1 Score: 172 bits (437), Expect = 9.560e-50
Identity = 86/162 (53.09%), Postives = 111/162 (68.52%), Query Frame = 0

Query:   40 SADAQQAKPPEYQLMPGEIAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASKA--KNPMARFENMDTEYVARAAPKVRGAFTRTVDCRACDTVGVVQCDACEGEG 199
            +A   Q +P +Y L+PGEIAVRFINTPSG+++VAAAK GDNL+ VGDSV+L IPR CQTG+CG+CTC++ DP    G Q +RAC T  V   GS+E+V+DV+RM T  +   K+P  RFEN+DT YVA AAPK   + + +  C  C   G   C  C+G G
Sbjct:   85 TATTAQGRPIDYTLLPGEIAVRFINTPSGKDIVAAAKPGDNLMAVGDSVDLRIPRGCQTGLCGACTCELEDPEWAGGSQLIRACSTAVVLAKGSDEMVIDVSRMTTQKQRGRKDPFGRFENVDTAYVAGAAPK---SLSGSGPCGYCKGTGQHSCPDCDGSG 243

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A1X6NQW1 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQW1_PORUM)

HSP 1 Score: 154 bits (390), Expect = 3.050e-42
Identity = 89/207 (43.00%), Postives = 117/207 (56.52%), Query Frame = 0

Query:   37 AAQSADAQQAKPPEYQLMPGEIAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPS--------------SPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASKA-KNPMARFENMDTEYVARAAPKVRGAFTRTVDCRACDTVGVVQCDACEGEGEDE------------GYVCALCAGTGKLR 216
            A  S +A  +   ++ L PG++AVRFINTP+G++V+A A  G+ LL VGD V L IPR+C +G+CGSCTC++ DPS                 G QT+RAC T  +  DG  E+VVDV RM+T  +  ++P +RF+ +DT Y A AAPKV G   R V C  C  VG   C ACEG G +E               CA+C G   LR
Sbjct:  101 APPSPEAAPSATSDFDLGPGQVAVRFINTPTGEDVLAVANPGERLLSVGDGVGLTIPRSCVSGLCGSCTCELQDPSWVPEDDDAXXXXXGGRPGWQTIRACSTEVMLLDGCTEMVVDVVRMRTTGRRERDPFSRFDGLDTGYEAGAAPKVAG-IRRDVSCAHCAGVGRHTCYACEGTGREEVDPSGVGGGAGSAQPCAVCMGLKILR 306

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A7S3A5G6 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5G6_9RHOD)

HSP 1 Score: 136 bits (342), Expect = 3.070e-36
Identity = 62/133 (46.62%), Postives = 93/133 (69.92%), Query Frame = 0

Query:   35 QPAAQSADAQQAKPPEYQLMPGEIAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTAS----KAKNPMARFENMDTEY 163
            +P  + +++++ +   Y+L PGE+AVRF N+P   +V+A  + G NL+++GDSV++ IPR C+TG+CG+CT D+ DPS PDG QT+RACQT      G +E+V+D+ RM+ A       K+P ARFE +DTEY
Sbjct:   82 EPKVKRSESKRPREKNYELRPGEVAVRFTNSPMKVDVIAPTEAGKNLMKLGDSVDIKIPRGCRTGLCGACTVDLEDPSFPDGIQTIRACQTNVQVPPGCDEMVIDLHRMERAGDDDFSVKDPFARFEQIDTEY 214

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A7J7IJ84 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJ84_9RHOD)

HSP 1 Score: 136 bits (343), Expect = 1.960e-35
Identity = 83/186 (44.62%), Postives = 110/186 (59.14%), Query Frame = 0

Query:   58 IAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASK-------AKNPMARFENMDTEYVARAAPKV----RGAFTR--TVDCRACDTVGVVQCDACEGEG-EDEGYVCALCAGTGKLRXXXXXXTGIVTVR 229
            + VRFINTPSG ++  AA+ G  +L V D + L IPR C +GVCG+CTCD++ P+ P GRQTVR C T      G +++V+DV RMK ++        A   M+RFEN+D +Y A AAP+V       FTR  TV C  C   G   C+AC+G G      +C +C G  +  XXXXXX G  T+R
Sbjct:  117 VKVRFINTPSGLDLETAARPGSIILAVADELGLRIPRGCTSGVCGACTCDMVHPALPGGRQTVRVCSTRVSTFPGIDDIVIDVYRMKESATREALQGAAPTGMSRFENIDFDYKAGAAPQVILSPTSPFTRQRTVRCEKCKGTGKHICEACQGSGLSSPDLMCYICVGLRRXXXXXXXXXGSRTLR 302

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A7S3A412 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A412_9RHOD)

HSP 1 Score: 129 bits (325), Expect = 2.150e-34
Identity = 66/155 (42.58%), Postives = 88/155 (56.77%), Query Frame = 0

Query:   78 GDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTAS----KAKNPMARFENMDTEYVARAAPKVRGAFTRTVDCRACDTVGVVQCDACEGEGEDEGYV---CALCAGTGKLRXXXXXXTGI 225
            G NL+++GDSV++ IPR C+TG+CG+CT D+ DPS PDG QT+RACQT      G +E+V+D+ RM+ A       K+P ARFE +DTEY   A PK R        C  CD  G   C  C GEG  +      C +C G   +R      +G+
Sbjct:    2 GKNLMKLGDSVDIKIPRGCRTGLCGACTVDLEDPSFPDGIQTIRACQTNVQVPPGCDEMVIDLHRMERAGDDDFSVKDPFARFEQIDTEYKPAATPKSRNTLVSITSCTTCDGTGKHICPECMGEGTMQNNAEIRCYVCMGRPYVRCADCQGSGM 156

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A7S0HU56 (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HU56_9CRYP)

HSP 1 Score: 132 bits (331), Expect = 3.380e-34
Identity = 76/149 (51.01%), Postives = 89/149 (59.73%), Query Frame = 0

Query:   51 YQLMPGEIAVRFINTPS------GQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASKA--KNPMARFENMDTEYVARAAP--KVRGAFTRTVDCRACDTVGV 189
            Y+L PGEIAVRF+N P         +V+AAAK GD LL VGDSV + +PR CQTG+CGSCTCDV DPS P  R   RAC T     DG +ELVVDV R+  +S    K+PMARF ++D   V   A     R      VDC AC   GV
Sbjct:   82 YELGPGEIAVRFVNAPGRYPSDGANDVIAAAKPGDVLLAVGDSVGISLPRGCQTGLCGSCTCDVEDPSFPGSRSIARACCTKVALPDGCDELVVDVYRLLNSSSKPKKDPMARFSSLDDPKVGFKARWNLPRDGPEGKVDCPACGAKGV 230

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A7S1EMM1 (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EMM1_HEMAN)

HSP 1 Score: 121 bits (303), Expect = 8.590e-30
Identity = 70/149 (46.98%), Postives = 92/149 (61.74%), Query Frame = 0

Query:   50 EYQLMPGEIAVRFINTP-----SGQ-EVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTAS-KAK-NPMARFENMDTEYVA-RAAPKVRGAFTRTVDCRACDTVGV 189
            EY LM GEI VRFINTP     +G+ +++AAAK G+ L+ V DSV + +PR C TG+CGSCTCD+ DP+ P  R  +RAC T  V  +G  E+V+D  RM  A  K K +PMARF ++D   V  +A   +    +  VDC AC   GV
Sbjct:  107 EYSLMKGEIPVRFINTPGRHPSTGENDIIAAAKEGEVLMAVADSVGVDLPRGCMTGLCGSCTCDLEDPAFPGERSVLRACSTRVVLPEGCEEMVIDCYRMLEAKGKPKADPMARFSSLDDPNVGFKARWNMPEEGSAKVDCPACGATGV 255

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BLAST of Ggra8964.t1 vs. uniprot
Match: M2XPV2 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XPV2_GALSU)

HSP 1 Score: 120 bits (301), Expect = 1.350e-29
Identity = 67/150 (44.67%), Postives = 88/150 (58.67%), Query Frame = 0

Query:   50 EYQLMPGEIAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASKAKNPMARFENMDTEYVARAAPKVRGAFTRTVDCRACDTVGVVQCDACEGEG 199
            +Y+L PGEIAVRFINTP+G+++V AAK  +NL+ V DSV L IPR C+TGVCG+CT ++ D SS DGR  +R C T      G +E+VVDV   +  S   +         TE V ++  K+      T DC  C   G+V C  C G G
Sbjct:   96 DYELKPGEIAVRFINTPTGEDIVVAAKPSENLMDVADSVGLKIPRYCETGVCGTCTAELEDLSSVDGRVAIRPCCTDVHLPTGCDEMVVDVFHCRNFSSVVDY--------TEEVLQSDRKL------TRDCTTCLGQGIVSCFPCGGSG 231

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BLAST of Ggra8964.t1 vs. uniprot
Match: A0A7S0MEE4 (Hypothetical protein n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MEE4_9CRYP)

HSP 1 Score: 115 bits (288), Expect = 7.230e-28
Identity = 75/178 (42.13%), Postives = 101/178 (56.74%), Query Frame = 0

Query:   45 QAKPPEYQLMPGEIAVRFINTPSG------QEVVAAAKVGDNLLRVGDSVNLHIPRACQTGVCGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARM--KTASKAKNPMARFENMDTE---YVARAAPKVRGAFTRTVDCRACDTVGVVQCDACEGEGEDEGYVCALCAG 211
            +++   Y+L  GE+AVRFIN P         +V+AAAK G+ L+ V DSV +HIPR C TG+CG+CTCD+ D S P  R  +RAC T     +GS+E+VVD+ RM  ++ +   +PMARFE +D     + AR       A  R  DC AC   GV   DA  G  +D    C+L  G
Sbjct:   73 ESRDKNYKLAKGEVAVRFINAPGRAPSTGKNDVIAAAKPGEVLIAVADSVGIHIPRGCMTGLCGACTCDMEDLSFPGNRGILRACSTLVSVGEGSDEMVVDLHRMLGRSGAAKPDPMARFEKLDDPNDGFKARWNLPSGPASRR--DCGACGARGV---DAKGGMPDD----CSLAPG 241

The following BLAST results are available for this feature:

BLAST of Ggra8964.t1 vs. uniprot

BLAST of Ggra8964.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20


Match Name	E-value	Identity	Description
A0A2V3IZ64	6.900e-69	72.92	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A5J4Z3Q4	9.560e-50	53.09	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A1X6NQW1	3.050e-42	43.00	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S3A5G6	3.070e-36	46.62	Hypothetical protein (Fragment) n=1 Tax=Rhodosorus...	[more]
A0A7J7IJ84	1.960e-35	44.62	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S3A412	2.150e-34	42.58	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A7S0HU56	3.380e-34	51.01	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]
A0A7S1EMM1	8.590e-30	46.98	Hypothetical protein n=1 Tax=Hemiselmis andersenii...	[more]
M2XPV2	1.350e-29	44.67	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S0MEE4	7.230e-28	42.13	Hypothetical protein n=2 Tax=Cryptomonas curvata T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 65..125 e-value: 4.7E-8 score: 32.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 60..132 e-value: 6.5806E-7 score: 43.9228
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 58..167 e-value: 8.7E-8 score: 33.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 96..104
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 60..140

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:986721..987416 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8964.t1	Ggra8964.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000860_pilon 986721..987416 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8964.t1 ID=Ggra8964.t1|Name=Ggra8964.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MTHAAEPPPTGSSPAELRQPSPSPSPSPSPPPSSQPAAQSADAQQAKPPE
YQLMPGEIAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGV
CGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASKAK
NPMARFENMDTEYVARAAPKVRGAFTRTVDCRACDTVGVVQCDACEGEGE
DEGYVCALCAGTGKLRCGDCQGTGIVTVRTR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR012675	Beta-grasp_dom_sf
IPR006058	2Fe2S_fd_BS
IPR036010	2Fe-2S_ferredoxin-like_sf